Wall clock time and date at job start Sat Apr 11 2020 05:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45200 * 109.47444 * 2 1 4 4 C 1.34221 * 117.00125 * 179.97438 * 3 2 1 5 5 O 1.20824 * 120.00153 * 0.02562 * 4 3 2 6 6 C 1.50704 * 120.00029 * 179.97438 * 4 3 2 7 7 N 1.46497 * 109.47325 * 180.02562 * 6 4 3 8 8 C 1.46503 * 120.00044 * 270.00291 * 7 6 4 9 9 C 1.50699 * 109.46678 * 269.99832 * 8 7 6 10 10 H 1.08002 * 120.00686 * 359.97438 * 9 8 7 11 11 C 1.37884 * 119.99948 * 179.97438 * 9 8 7 12 12 N 1.31512 * 120.00106 * 180.02562 * 11 9 8 13 13 Si 1.86805 * 119.99682 * 359.97438 * 11 9 8 14 14 H 1.48497 * 109.47119 * 90.00114 * 13 11 9 15 15 H 1.48497 * 109.46817 * 209.99985 * 13 11 9 16 16 H 1.48502 * 109.46967 * 329.99931 * 13 11 9 17 17 C 1.39307 * 120.00080 * 90.00055 * 7 6 4 18 18 C 1.39555 * 120.09407 * 4.97519 * 17 7 6 19 19 C 1.38408 * 117.94526 * 180.02562 * 18 17 7 20 20 C 1.39393 * 117.98294 * 0.02562 * 19 18 17 21 21 O 1.35800 * 120.05958 * 180.02562 * 20 19 18 22 22 C 1.42895 * 117.00216 * 179.97438 * 21 20 19 23 23 C 1.53003 * 109.47177 * 180.02562 * 22 21 20 24 24 O 1.42893 * 109.46994 * 64.99721 * 23 22 21 25 25 C 1.42905 * 113.99719 * 180.02562 * 24 23 22 26 26 N 1.32144 * 119.88607 * 359.97438 * 20 19 18 27 27 N 1.28344 * 122.21524 * 0.02562 * 26 20 19 28 28 H 1.09003 * 109.47337 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46880 * 300.00014 * 1 2 3 30 30 H 1.09005 * 109.47275 * 59.99666 * 1 2 3 31 31 H 1.09001 * 109.46880 * 239.99986 * 2 1 3 32 32 H 1.09001 * 109.47413 * 119.99842 * 2 1 3 33 33 H 1.09000 * 109.47227 * 59.99877 * 6 4 3 34 34 H 1.09001 * 109.47078 * 300.00177 * 6 4 3 35 35 H 1.08996 * 109.46849 * 29.99265 * 8 7 6 36 36 H 1.09002 * 109.47034 * 149.99849 * 8 7 6 37 37 H 0.96998 * 120.00039 * 180.02562 * 12 11 9 38 38 H 1.07994 * 121.02285 * 0.02562 * 18 17 7 39 39 H 1.07997 * 121.01165 * 179.97438 * 19 18 17 40 40 H 1.09004 * 109.47217 * 300.00376 * 22 21 20 41 41 H 1.08992 * 109.47054 * 60.00138 * 22 21 20 42 42 H 1.09000 * 109.46931 * 185.00321 * 23 22 21 43 43 H 1.09000 * 109.46695 * 305.00106 * 23 22 21 44 44 H 1.09004 * 109.46806 * 180.02562 * 25 24 23 45 45 H 1.09008 * 109.46948 * 299.99820 * 25 24 23 46 46 H 1.08992 * 109.47645 * 60.00208 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9208 2.9373 0.0000 7 7 5.3837 2.8607 0.0001 8 6 6.1152 2.8228 1.2689 9 6 6.4403 4.2287 1.7033 10 1 6.1333 5.0666 1.0950 11 6 7.1298 4.4454 2.8776 12 7 7.4131 5.6723 3.2569 13 14 7.6603 2.9962 3.9302 14 1 9.0120 2.5476 3.5098 15 1 7.6966 3.4075 5.3565 16 1 6.6939 1.8814 3.7609 17 6 6.0794 2.8237 -1.2062 18 6 5.3941 2.9640 -2.4138 19 6 6.1292 2.9199 -3.5857 20 6 7.5076 2.7377 -3.4867 21 8 8.2697 2.6886 -4.6096 22 6 9.6750 2.5000 -4.4323 23 6 10.3623 2.4718 -5.7989 24 8 10.2283 3.7488 -6.4259 25 6 10.8386 3.8300 -7.7155 26 7 8.0717 2.6139 -2.2981 27 7 7.3916 2.6545 -1.2104 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.5844 3.4700 0.8895 34 1 3.5852 3.4690 -0.8905 35 1 5.4999 2.3409 2.0287 36 1 7.0394 2.2597 1.1388 37 1 7.8985 5.8247 4.0828 38 1 4.3233 3.1026 -2.4332 39 1 5.6493 3.0228 -4.5477 40 1 10.0797 3.3203 -3.8393 41 1 9.8527 1.5566 -3.9163 42 1 11.4193 2.2397 -5.6693 43 1 9.8969 1.7096 -6.4239 44 1 10.6933 4.8301 -8.1239 45 1 11.9057 3.6260 -7.6260 46 1 10.3829 3.0961 -8.3801 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157161541.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:37 Heat of formation + Delta-G solvation = -84.929757 kcal Electronic energy + Delta-G solvation = -29376.374674 eV Core-core repulsion = 25075.782058 eV Total energy + Delta-G solvation = -4300.592616 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.81929 -40.25081 -38.69191 -37.62898 -36.84917 -35.77660 -32.98015 -32.44297 -31.92297 -31.04298 -29.89114 -29.09450 -26.58171 -26.39943 -24.55904 -23.56519 -23.07735 -22.29426 -21.49351 -20.48238 -18.48139 -17.75078 -17.29412 -17.05114 -16.95894 -16.83108 -16.44561 -16.00356 -15.82136 -15.49065 -15.29489 -14.53133 -14.43475 -14.14375 -13.86727 -13.82729 -13.49771 -13.27747 -13.21664 -12.92696 -12.60575 -12.41281 -12.21661 -11.82234 -11.74890 -11.73213 -11.63831 -11.58147 -11.27285 -11.09384 -10.85184 -10.60187 -10.55500 -10.45688 -10.19291 -9.94940 -9.90913 -9.57859 -9.11662 -8.96912 -8.57868 -7.06749 -6.08891 -4.08354 1.18970 1.68564 2.35443 2.60654 3.09662 3.31834 3.37538 3.41703 3.51225 3.57245 4.13635 4.41130 4.65994 4.75246 4.79004 4.79606 4.88020 4.91964 4.93393 5.00880 5.02520 5.12328 5.14116 5.14473 5.24412 5.27003 5.32390 5.40801 5.49728 5.54325 5.58784 5.62095 5.64379 5.79709 5.82072 5.97800 6.28719 6.48030 6.61317 6.91825 6.94631 7.39253 7.54131 7.59049 7.79338 7.94583 8.48251 8.93835 9.35937 9.51261 11.04016 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007730 B = 0.003447 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3621.190296 B = 8121.755247 C =11044.823051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.362 6.362 4 C 0.434 3.566 5 O -0.494 6.494 6 C 0.138 3.862 7 N -0.561 5.561 8 C 0.228 3.772 9 C -0.531 4.531 10 H 0.077 0.923 11 C 0.077 3.923 12 N -0.895 5.895 13 Si 0.872 3.128 14 H -0.271 1.271 15 H -0.285 1.285 16 H -0.266 1.266 17 C 0.340 3.660 18 C -0.159 4.159 19 C -0.091 4.091 20 C 0.194 3.806 21 O -0.302 6.302 22 C 0.071 3.929 23 C 0.063 3.937 24 O -0.384 6.384 25 C 0.031 3.969 26 N -0.259 5.259 27 N -0.247 5.247 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.134 0.866 34 H 0.112 0.888 35 H 0.028 0.972 36 H 0.046 0.954 37 H 0.265 0.735 38 H 0.146 0.854 39 H 0.148 0.852 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.058 0.942 44 H 0.086 0.914 45 H 0.040 0.960 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.636 -8.778 -16.685 19.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.014 4.014 3 O -0.279 6.279 4 C 0.273 3.727 5 O -0.379 6.379 6 C 0.010 3.990 7 N -0.274 5.274 8 C 0.108 3.892 9 C -0.570 4.570 10 H 0.095 0.905 11 C -0.126 4.126 12 N -0.533 5.533 13 Si 0.698 3.302 14 H -0.196 1.196 15 H -0.211 1.211 16 H -0.191 1.191 17 C 0.099 3.901 18 C -0.193 4.193 19 C -0.121 4.121 20 C 0.005 3.995 21 O -0.207 6.207 22 C -0.005 4.005 23 C -0.014 4.014 24 O -0.302 6.302 25 C -0.066 4.066 26 N -0.113 5.113 27 N -0.099 5.099 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.151 0.849 34 H 0.130 0.870 35 H 0.045 0.955 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.163 0.837 39 H 0.166 0.834 40 H 0.095 0.905 41 H 0.100 0.900 42 H 0.089 0.911 43 H 0.076 0.924 44 H 0.104 0.896 45 H 0.059 0.941 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -5.157 -9.036 -15.722 18.853 hybrid contribution -0.604 -0.877 -0.201 1.084 sum -5.761 -9.914 -15.923 19.622 Atomic orbital electron populations 1.21795 0.92763 1.02741 1.03517 1.22968 0.95177 0.80758 1.02455 1.86517 1.24918 1.32031 1.84411 1.25137 0.80409 0.94349 0.72758 1.90681 1.60315 1.42925 1.44028 1.20914 0.81423 0.89507 1.07137 1.46155 1.02051 1.75074 1.04090 1.19771 0.92435 0.98322 0.78674 1.21328 1.37074 0.91396 1.07207 0.90539 1.24793 0.95025 0.95533 0.97253 1.69887 1.40219 1.19666 1.23554 0.86917 0.80248 0.83220 0.79778 1.19643 1.21118 1.19064 1.19825 0.91049 0.92565 0.86710 1.21705 1.01498 1.05026 0.91070 1.21136 0.91124 1.00077 0.99760 1.21111 0.89998 1.00789 0.87625 1.86187 1.19677 1.88199 1.26675 1.22641 0.78774 1.03124 0.95979 1.22639 0.99088 0.86290 0.93333 1.88000 1.78082 1.32253 1.31909 1.22745 0.96585 1.02531 0.84698 1.72838 1.30786 1.13400 0.94314 1.72881 1.04196 1.16108 1.16684 0.90502 0.91405 0.91524 0.91519 0.91377 0.84857 0.87013 0.95459 0.93610 0.92522 0.83667 0.83382 0.90501 0.90025 0.91104 0.92352 0.89588 0.94145 0.94101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 10.29 37.16 0.38 -0.77 16 2 C 0.06 0.66 6.19 37.16 0.23 0.89 16 3 O -0.36 -4.78 10.22 -39.23 -0.40 -5.18 16 4 C 0.43 6.84 8.03 36.01 0.29 7.13 16 5 O -0.49 -9.54 16.18 -18.75 -0.30 -9.84 16 6 C 0.14 2.13 5.87 -5.19 -0.03 2.10 16 7 N -0.56 -11.48 2.07 -176.37 -0.36 -11.85 16 8 C 0.23 5.53 4.30 -5.19 -0.02 5.50 16 9 C -0.53 -14.76 9.94 -34.44 -0.34 -15.10 16 10 H 0.08 2.31 8.06 -52.49 -0.42 1.88 16 11 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 12 N -0.90 -27.16 13.96 55.43 0.77 -26.39 16 13 Si 0.87 21.59 27.47 -169.99 -4.67 16.92 16 14 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 16 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 17 C 0.34 6.91 7.45 -154.64 -1.15 5.75 16 18 C -0.16 -2.53 9.35 -39.03 -0.36 -2.90 16 19 C -0.09 -1.38 10.15 -39.09 -0.40 -1.78 16 20 C 0.19 3.42 7.57 -16.99 -0.13 3.29 16 21 O -0.30 -4.78 10.10 -23.98 -0.24 -5.02 16 22 C 0.07 0.95 5.71 37.16 0.21 1.16 16 23 C 0.06 0.66 6.32 37.16 0.23 0.90 16 24 O -0.38 -4.75 10.67 -40.09 -0.43 -5.17 16 25 C 0.03 0.25 11.01 101.05 1.11 1.37 16 26 N -0.26 -5.33 10.39 30.52 0.32 -5.01 16 27 N -0.25 -5.62 10.26 31.27 0.32 -5.30 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.72 8.13 -51.93 -0.42 0.30 16 32 H 0.07 0.78 8.13 -51.93 -0.42 0.36 16 33 H 0.13 1.95 8.07 -51.93 -0.42 1.53 16 34 H 0.11 1.32 6.03 -51.93 -0.31 1.01 16 35 H 0.03 0.65 7.13 -51.93 -0.37 0.28 16 36 H 0.05 1.19 6.75 -51.93 -0.35 0.84 16 37 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 38 H 0.15 1.75 6.14 -52.49 -0.32 1.43 16 39 H 0.15 1.69 8.06 -52.49 -0.42 1.27 16 40 H 0.08 1.13 8.11 -51.93 -0.42 0.71 16 41 H 0.08 1.03 8.11 -51.93 -0.42 0.61 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.04 0.27 8.14 -51.92 -0.42 -0.15 16 46 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 LS Contribution 395.87 15.07 5.97 5.97 Total: -1.00 -36.33 395.87 -5.96 -42.29 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -6.86 Total: -1.07 kcal Atomic # 6 Polarization: 9.72 SS G_CDS: -0.07 Total: 9.64 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: 1.05 Total: -48.54 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -1.37 Total: -25.21 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.33 -5.96 -42.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157161541.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.637 kcal (2) G-P(sol) polarization free energy of solvation -36.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds