Wall clock time and date at job start Sat Apr 11 2020 05:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45200 * 109.47444 * 2 1 4 4 C 1.34221 * 117.00125 * 179.97438 * 3 2 1 5 5 O 1.20824 * 120.00153 * 0.02562 * 4 3 2 6 6 C 1.50704 * 120.00029 * 179.97438 * 4 3 2 7 7 N 1.46497 * 109.47325 * 180.02562 * 6 4 3 8 8 C 1.46503 * 120.00044 * 270.00291 * 7 6 4 9 9 C 1.50699 * 109.46678 * 269.99832 * 8 7 6 10 10 H 1.08002 * 120.00686 * 359.97438 * 9 8 7 11 11 C 1.37884 * 119.99948 * 179.97438 * 9 8 7 12 12 N 1.31512 * 120.00106 * 180.02562 * 11 9 8 13 13 Si 1.86805 * 119.99682 * 359.97438 * 11 9 8 14 14 H 1.48497 * 109.47119 * 90.00114 * 13 11 9 15 15 H 1.48497 * 109.46817 * 209.99985 * 13 11 9 16 16 H 1.48502 * 109.46967 * 329.99931 * 13 11 9 17 17 C 1.39307 * 120.00080 * 90.00055 * 7 6 4 18 18 C 1.39555 * 120.09407 * 4.97519 * 17 7 6 19 19 C 1.38408 * 117.94526 * 180.02562 * 18 17 7 20 20 C 1.39393 * 117.98294 * 0.02562 * 19 18 17 21 21 O 1.35800 * 120.05958 * 180.02562 * 20 19 18 22 22 C 1.42895 * 117.00216 * 179.97438 * 21 20 19 23 23 C 1.53003 * 109.47177 * 180.02562 * 22 21 20 24 24 O 1.42893 * 109.46994 * 64.99721 * 23 22 21 25 25 C 1.42905 * 113.99719 * 180.02562 * 24 23 22 26 26 N 1.32144 * 119.88607 * 359.97438 * 20 19 18 27 27 N 1.28344 * 122.21524 * 0.02562 * 26 20 19 28 28 H 1.09003 * 109.47337 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46880 * 300.00014 * 1 2 3 30 30 H 1.09005 * 109.47275 * 59.99666 * 1 2 3 31 31 H 1.09001 * 109.46880 * 239.99986 * 2 1 3 32 32 H 1.09001 * 109.47413 * 119.99842 * 2 1 3 33 33 H 1.09000 * 109.47227 * 59.99877 * 6 4 3 34 34 H 1.09001 * 109.47078 * 300.00177 * 6 4 3 35 35 H 1.08996 * 109.46849 * 29.99265 * 8 7 6 36 36 H 1.09002 * 109.47034 * 149.99849 * 8 7 6 37 37 H 0.96998 * 120.00039 * 180.02562 * 12 11 9 38 38 H 1.07994 * 121.02285 * 0.02562 * 18 17 7 39 39 H 1.07997 * 121.01165 * 179.97438 * 19 18 17 40 40 H 1.09004 * 109.47217 * 300.00376 * 22 21 20 41 41 H 1.08992 * 109.47054 * 60.00138 * 22 21 20 42 42 H 1.09000 * 109.46931 * 185.00321 * 23 22 21 43 43 H 1.09000 * 109.46695 * 305.00106 * 23 22 21 44 44 H 1.09004 * 109.46806 * 180.02562 * 25 24 23 45 45 H 1.09008 * 109.46948 * 299.99820 * 25 24 23 46 46 H 1.08992 * 109.47645 * 60.00208 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9208 2.9373 0.0000 7 7 5.3837 2.8607 0.0001 8 6 6.1152 2.8228 1.2689 9 6 6.4403 4.2287 1.7033 10 1 6.1333 5.0666 1.0950 11 6 7.1298 4.4454 2.8776 12 7 7.4131 5.6723 3.2569 13 14 7.6603 2.9962 3.9302 14 1 9.0120 2.5476 3.5098 15 1 7.6966 3.4075 5.3565 16 1 6.6939 1.8814 3.7609 17 6 6.0794 2.8237 -1.2062 18 6 5.3941 2.9640 -2.4138 19 6 6.1292 2.9199 -3.5857 20 6 7.5076 2.7377 -3.4867 21 8 8.2697 2.6886 -4.6096 22 6 9.6750 2.5000 -4.4323 23 6 10.3623 2.4718 -5.7989 24 8 10.2283 3.7488 -6.4259 25 6 10.8386 3.8300 -7.7155 26 7 8.0717 2.6139 -2.2981 27 7 7.3916 2.6545 -1.2104 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.5844 3.4700 0.8895 34 1 3.5852 3.4690 -0.8905 35 1 5.4999 2.3409 2.0287 36 1 7.0394 2.2597 1.1388 37 1 7.8985 5.8247 4.0828 38 1 4.3233 3.1026 -2.4332 39 1 5.6493 3.0228 -4.5477 40 1 10.0797 3.3203 -3.8393 41 1 9.8527 1.5566 -3.9163 42 1 11.4193 2.2397 -5.6693 43 1 9.8969 1.7096 -6.4239 44 1 10.6933 4.8301 -8.1239 45 1 11.9057 3.6260 -7.6260 46 1 10.3829 3.0961 -8.3801 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157161541.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:36 Heat of formation + Delta-G solvation = -111.093387 kcal Electronic energy + Delta-G solvation = -29377.509215 eV Core-core repulsion = 25075.782058 eV Total energy + Delta-G solvation = -4301.727156 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.18562 -41.46637 -39.84648 -38.63998 -38.05940 -37.16810 -34.85399 -34.01381 -32.78638 -32.26557 -31.05051 -30.77761 -27.98587 -27.26613 -25.92326 -24.84334 -24.27912 -23.35539 -22.93713 -21.80471 -19.72416 -19.23165 -18.71876 -18.58361 -18.44996 -17.89887 -17.58873 -17.21340 -16.81929 -16.52996 -16.40404 -16.10974 -15.73691 -15.52495 -15.18740 -14.99172 -14.74366 -14.56079 -14.37935 -14.29627 -13.65057 -13.54282 -13.46659 -13.24925 -13.09317 -12.81161 -12.69878 -12.56349 -12.50214 -12.48046 -12.39108 -12.20976 -11.98380 -11.78329 -11.62373 -11.50880 -11.32281 -10.80133 -10.67906 -10.59237 -10.35869 -8.60787 -8.30659 -6.33833 -0.10898 0.31477 1.13968 1.32017 1.37211 1.42182 1.45956 1.89204 2.17522 2.32319 2.72350 2.79740 3.04112 3.33554 3.58930 3.68717 3.79825 3.80887 3.96432 4.01964 4.11738 4.12331 4.13151 4.36589 4.37388 4.38821 4.41372 4.52459 4.54007 4.57704 4.65464 4.72944 4.84908 4.87292 4.88201 4.93859 4.96163 5.07701 5.16332 5.44844 5.47312 5.89422 6.05380 6.19802 6.27186 6.36524 6.68220 6.75269 7.29320 7.93837 8.85519 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007730 B = 0.003447 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3621.190296 B = 8121.755247 C =11044.823051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.052 3.948 3 O -0.354 6.354 4 C 0.444 3.556 5 O -0.534 6.534 6 C 0.133 3.867 7 N -0.575 5.575 8 C 0.244 3.756 9 C -0.525 4.525 10 H 0.041 0.959 11 C 0.021 3.979 12 N -0.940 5.940 13 Si 0.934 3.066 14 H -0.276 1.276 15 H -0.275 1.275 16 H -0.250 1.250 17 C 0.319 3.681 18 C -0.146 4.146 19 C -0.080 4.080 20 C 0.193 3.807 21 O -0.301 6.301 22 C 0.064 3.936 23 C 0.069 3.931 24 O -0.419 6.419 25 C 0.025 3.975 26 N -0.294 5.294 27 N -0.307 5.307 28 H 0.098 0.902 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.139 0.861 34 H 0.154 0.846 35 H 0.033 0.967 36 H 0.023 0.977 37 H 0.267 0.733 38 H 0.189 0.811 39 H 0.195 0.805 40 H 0.055 0.945 41 H 0.085 0.915 42 H 0.097 0.903 43 H 0.074 0.926 44 H 0.092 0.908 45 H 0.055 0.945 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.586 -10.051 -18.719 22.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.022 4.022 3 O -0.270 6.270 4 C 0.286 3.714 5 O -0.423 6.423 6 C 0.007 3.993 7 N -0.288 5.288 8 C 0.122 3.878 9 C -0.563 4.563 10 H 0.059 0.941 11 C -0.178 4.178 12 N -0.580 5.580 13 Si 0.758 3.242 14 H -0.202 1.202 15 H -0.200 1.200 16 H -0.174 1.174 17 C 0.076 3.924 18 C -0.178 4.178 19 C -0.109 4.109 20 C 0.001 3.999 21 O -0.206 6.206 22 C -0.011 4.011 23 C -0.008 4.008 24 O -0.338 6.338 25 C -0.070 4.070 26 N -0.147 5.147 27 N -0.157 5.157 28 H 0.116 0.884 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.157 0.843 34 H 0.171 0.829 35 H 0.050 0.950 36 H 0.042 0.958 37 H 0.077 0.923 38 H 0.206 0.794 39 H 0.212 0.788 40 H 0.073 0.927 41 H 0.103 0.897 42 H 0.115 0.885 43 H 0.092 0.908 44 H 0.110 0.890 45 H 0.073 0.927 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.133 -10.316 -17.792 21.768 hybrid contribution -0.035 -0.449 0.233 0.507 sum -7.168 -10.765 -17.558 21.808 Atomic orbital electron populations 1.21813 0.89942 1.04317 1.03970 1.23284 0.97317 0.79428 1.02180 1.86512 1.23242 1.33554 1.83669 1.25025 0.80934 0.93798 0.71651 1.90676 1.61389 1.44099 1.46125 1.21223 0.78705 0.89907 1.09464 1.46010 1.03798 1.76116 1.02896 1.19259 0.92257 0.95404 0.80872 1.21504 1.36168 0.92274 1.06399 0.94074 1.25617 0.95262 0.98055 0.98822 1.70016 1.41718 1.21852 1.24462 0.85919 0.79676 0.80285 0.78308 1.20161 1.19967 1.17420 1.20184 0.90982 0.93205 0.88036 1.22127 1.03424 1.02890 0.89350 1.21671 0.89950 0.97804 1.01467 1.21541 0.91486 0.99466 0.87371 1.86213 1.20735 1.87880 1.25799 1.22842 0.77758 1.02432 0.98069 1.22684 1.00229 0.86205 0.91642 1.87940 1.78980 1.33132 1.33790 1.22940 0.97411 1.03458 0.83225 1.72680 1.31539 1.15472 0.95020 1.72703 1.06063 1.18694 1.18256 0.88368 0.91311 0.90670 0.91380 0.92240 0.84290 0.82890 0.94954 0.95844 0.92341 0.79354 0.78792 0.92653 0.89654 0.88526 0.90788 0.88968 0.92656 0.92784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 10.29 71.98 0.74 -1.05 16 2 C 0.05 1.03 6.19 71.98 0.45 1.47 16 3 O -0.35 -8.54 10.22 -51.33 -0.52 -9.07 16 4 C 0.44 13.30 8.03 71.24 0.57 13.87 16 5 O -0.53 -20.29 16.18 21.97 0.36 -19.94 16 6 C 0.13 3.87 5.87 85.63 0.50 4.38 16 7 N -0.57 -23.48 2.07 -711.91 -1.47 -24.95 16 8 C 0.24 12.07 4.30 85.63 0.37 12.44 16 9 C -0.52 -30.08 9.94 25.60 0.25 -29.82 16 10 H 0.04 2.59 8.06 -2.91 -0.02 2.57 16 11 C 0.02 1.23 5.47 84.66 0.46 1.70 16 12 N -0.94 -58.79 13.96 21.45 0.30 -58.49 16 13 Si 0.93 45.46 27.47 68.60 1.88 47.34 16 14 H -0.28 -13.56 7.11 99.48 0.71 -12.86 16 15 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 16 H -0.25 -11.44 6.54 99.48 0.65 -10.79 16 17 C 0.32 12.92 7.45 133.09 0.99 13.91 16 18 C -0.15 -4.27 9.35 22.63 0.21 -4.06 16 19 C -0.08 -2.21 10.15 22.59 0.23 -1.98 16 20 C 0.19 6.68 7.57 84.92 0.64 7.32 16 21 O -0.30 -9.28 10.10 -86.67 -0.88 -10.15 16 22 C 0.06 1.73 5.71 71.98 0.41 2.14 16 23 C 0.07 1.34 6.32 71.98 0.45 1.80 16 24 O -0.42 -9.84 10.67 -144.33 -1.54 -11.38 16 25 C 0.03 0.37 11.01 113.37 1.25 1.62 16 26 N -0.29 -12.47 10.39 -170.22 -1.77 -14.24 16 27 N -0.31 -14.45 10.26 -54.98 -0.56 -15.01 16 28 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 31 H 0.07 1.35 8.13 -2.39 -0.02 1.33 16 32 H 0.06 1.29 8.13 -2.39 -0.02 1.27 16 33 H 0.14 3.90 8.07 -2.39 -0.02 3.88 16 34 H 0.15 3.09 6.03 -2.39 -0.01 3.08 16 35 H 0.03 1.56 7.13 -2.39 -0.02 1.54 16 36 H 0.02 1.27 6.75 -2.39 -0.02 1.25 16 37 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 38 H 0.19 3.68 6.14 -2.91 -0.02 3.66 16 39 H 0.19 3.49 8.06 -2.91 -0.02 3.47 16 40 H 0.06 1.71 8.11 -2.39 -0.02 1.69 16 41 H 0.09 2.19 8.11 -2.39 -0.02 2.17 16 42 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.05 0.62 8.14 -2.38 -0.02 0.61 16 46 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -83.93 395.87 4.26 -79.67 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: 0.93 Total: 12.47 kcal Atomic # 6 Polarization: 16.21 SS G_CDS: 7.54 Total: 23.74 kcal Atomic # 7 Polarization: -109.18 SS G_CDS: -3.50 Total: -112.69 kcal Atomic # 8 Polarization: -47.95 SS G_CDS: -2.58 Total: -50.54 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.88 Total: 47.34 kcal Total: -83.93 4.26 -79.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157161541.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.422 kcal (2) G-P(sol) polarization free energy of solvation -83.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds