Wall clock time and date at job start Sat Apr 11 2020 05:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36929 * 119.99913 * 2 1 4 4 H 1.08006 * 119.99922 * 139.53186 * 3 2 1 5 5 C 1.38815 * 120.00121 * 319.52829 * 3 2 1 6 6 N 1.31618 * 119.99907 * 168.02562 * 5 3 2 7 7 Si 1.86799 * 119.99940 * 348.02708 * 5 3 2 8 8 H 1.48494 * 109.47174 * 86.26732 * 7 5 3 9 9 H 1.48498 * 109.46914 * 206.27021 * 7 5 3 10 10 H 1.48499 * 109.47043 * 326.26602 * 7 5 3 11 11 C 1.46500 * 119.99667 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.47013 * 84.75454 * 11 2 1 13 13 H 1.08995 * 109.70521 * 296.80929 * 12 11 2 14 14 C 1.53628 * 109.66494 * 57.40704 * 12 11 2 15 15 C 1.53039 * 109.24071 * 174.54958 * 14 12 11 16 16 C 1.53048 * 109.53685 * 298.50573 * 15 14 12 17 17 C 1.53192 * 109.30722 * 61.37062 * 16 15 14 18 18 N 1.46928 * 109.58430 * 176.45603 * 12 11 2 19 19 C 1.34776 * 120.63419 * 6.62555 * 18 12 11 20 20 O 1.21550 * 119.99429 * 356.09762 * 19 18 12 21 21 C 1.47885 * 120.00149 * 176.08543 * 19 18 12 22 22 N 1.32838 * 119.72059 * 351.66834 * 21 19 18 23 23 C 1.31364 * 121.68627 * 179.97438 * 22 21 19 24 24 C 1.39008 * 120.93566 * 0.02562 * 23 22 21 25 25 F 1.35101 * 120.32921 * 179.97438 * 24 23 22 26 26 C 1.38717 * 119.33992 * 359.97438 * 24 23 22 27 27 C 1.38841 * 118.44939 * 0.02562 * 26 24 23 28 28 F 1.35099 * 120.48624 * 179.97438 * 27 26 24 29 29 H 1.09002 * 109.47663 * 236.85813 * 1 2 3 30 30 H 1.08997 * 109.47258 * 356.86121 * 1 2 3 31 31 H 1.09005 * 109.46989 * 116.85598 * 1 2 3 32 32 H 0.96998 * 120.00020 * 180.02562 * 6 5 3 33 33 H 1.08996 * 109.47369 * 324.75440 * 11 2 1 34 34 H 1.09000 * 109.47091 * 204.75350 * 11 2 1 35 35 H 1.09004 * 109.63533 * 54.55625 * 14 12 11 36 36 H 1.09000 * 109.45507 * 294.43001 * 14 12 11 37 37 H 1.08996 * 109.46041 * 178.49081 * 15 14 12 38 38 H 1.09001 * 109.45129 * 58.52447 * 15 14 12 39 39 H 1.08992 * 109.49853 * 301.41712 * 16 15 14 40 40 H 1.08997 * 109.49405 * 181.31777 * 16 15 14 41 41 H 1.09001 * 109.58057 * 185.57595 * 17 16 15 42 42 H 1.09000 * 109.70913 * 65.22567 * 17 16 15 43 43 H 1.08006 * 119.53233 * 179.97438 * 23 22 21 44 44 H 1.07998 * 120.77723 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.0359 1.2977 0.6071 5 6 1.7047 2.2442 -0.7803 6 7 2.2109 3.4469 -0.6084 7 14 0.3874 1.9615 -2.0742 8 1 -0.9542 2.0796 -1.4488 9 1 0.5236 2.9768 -3.1493 10 1 0.5458 0.6032 -2.6532 11 6 2.1974 -1.2688 0.0006 12 6 2.3382 -1.7770 -1.4356 13 1 1.3518 -1.9842 -1.8505 14 6 3.0490 -0.7177 -2.2916 15 6 3.3064 -1.2876 -3.6884 16 6 4.2189 -2.5116 -3.5816 17 6 3.5260 -3.5881 -2.7403 18 7 3.1450 -3.0049 -1.4467 19 6 3.5236 -3.5883 -0.2923 20 8 3.2587 -3.0611 0.7704 21 6 4.2611 -4.8698 -0.3185 22 7 4.4032 -5.5246 -1.4655 23 6 5.0511 -6.6653 -1.5333 24 6 5.6162 -7.2346 -0.3980 25 9 6.2795 -8.4086 -0.4816 26 6 5.4923 -6.5854 0.8216 27 6 4.8022 -5.3813 0.8627 28 9 4.6564 -4.7144 2.0286 29 1 -0.3634 -0.5618 0.8605 30 1 -0.3633 1.0261 0.0563 31 1 -0.3633 -0.4643 -0.9169 32 1 1.8998 4.1865 -1.1534 33 1 1.6523 -2.0028 0.5939 34 1 3.1873 -1.1167 0.4308 35 1 3.9981 -0.4486 -1.8279 36 1 2.4186 0.1681 -2.3705 37 1 3.7866 -0.5295 -4.3071 38 1 2.3589 -1.5793 -4.1416 39 1 5.1569 -2.2256 -3.1058 40 1 4.4207 -2.9029 -4.5787 41 1 4.2098 -4.4214 -2.5783 42 1 2.6348 -3.9423 -3.2583 43 1 5.1453 -7.1684 -2.4843 44 1 5.9226 -7.0066 1.7181 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158128843.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:42 Heat of formation + Delta-G solvation = -19.381817 kcal Electronic energy + Delta-G solvation = -30931.364758 eV Core-core repulsion = 26522.526998 eV Total energy + Delta-G solvation = -4408.837760 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.66748 -49.30249 -41.10373 -39.56141 -37.15453 -35.66114 -33.41287 -32.38764 -31.99426 -31.21980 -30.39780 -26.99171 -25.89867 -25.24285 -24.47699 -23.97394 -22.50395 -21.15664 -20.31666 -19.48459 -18.69615 -18.43058 -17.18387 -16.82716 -16.75729 -16.33838 -15.86068 -15.82908 -15.35224 -15.14234 -14.92894 -14.89413 -14.59273 -14.04798 -13.84297 -13.80192 -13.56983 -13.18025 -12.92302 -12.84371 -12.72761 -12.70084 -12.21224 -12.10404 -11.76980 -11.37901 -11.11081 -10.90049 -10.53745 -10.43916 -10.28440 -10.11516 -9.97744 -9.91517 -9.67721 -9.39537 -9.36044 -9.03558 -8.45546 -8.17626 -6.65926 -5.89727 -3.38708 -0.11409 0.27763 2.36827 2.85145 3.19285 3.30508 3.34291 3.46475 3.49923 3.50312 3.62104 3.99960 4.11849 4.43506 4.55238 4.86133 5.03300 5.12096 5.17092 5.21633 5.29886 5.39533 5.42744 5.56217 5.72447 5.76996 5.93058 6.03090 6.05206 6.21638 6.29200 6.37643 6.41409 6.49293 6.58291 6.66982 6.79848 6.81523 6.88821 6.94353 7.18271 7.31280 7.62499 8.16327 8.25104 8.52386 9.08444 9.78731 10.22170 11.26355 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.020017 B = 0.003526 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.479616 B = 7938.780875 C = 8771.007475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.612 5.612 3 C -0.256 4.256 4 H 0.079 0.921 5 C 0.030 3.970 6 N -0.912 5.912 7 Si 0.884 3.116 8 H -0.288 1.288 9 H -0.305 1.305 10 H -0.264 1.264 11 C 0.164 3.836 12 C 0.121 3.879 13 H 0.061 0.939 14 C -0.121 4.121 15 C -0.126 4.126 16 C -0.131 4.131 17 C 0.058 3.942 18 N -0.576 5.576 19 C 0.558 3.442 20 O -0.505 6.505 21 C 0.046 3.954 22 N -0.392 5.392 23 C 0.057 3.943 24 C 0.099 3.901 25 F -0.117 7.117 26 C -0.155 4.155 27 C 0.145 3.855 28 F -0.091 7.091 29 H 0.020 0.980 30 H 0.061 0.939 31 H 0.008 0.992 32 H 0.262 0.738 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.096 0.904 37 H 0.059 0.941 38 H 0.055 0.945 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.151 0.849 42 H 0.060 0.940 43 H 0.184 0.816 44 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.933 -24.040 -4.670 25.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.337 5.337 3 C -0.385 4.385 4 H 0.096 0.904 5 C -0.169 4.169 6 N -0.555 5.555 7 Si 0.714 3.286 8 H -0.215 1.215 9 H -0.233 1.233 10 H -0.189 1.189 11 C 0.038 3.962 12 C 0.017 3.983 13 H 0.079 0.921 14 C -0.159 4.159 15 C -0.163 4.163 16 C -0.170 4.170 17 C -0.064 4.064 18 N -0.308 5.308 19 C 0.342 3.658 20 O -0.380 6.380 21 C -0.092 4.092 22 N -0.102 5.102 23 C -0.104 4.104 24 C 0.077 3.923 25 F -0.096 7.096 26 C -0.182 4.182 27 C 0.122 3.878 28 F -0.069 7.069 29 H 0.038 0.962 30 H 0.080 0.920 31 H 0.027 0.973 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.114 0.886 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.167 0.833 42 H 0.078 0.922 43 H 0.201 0.799 44 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 6.409 -23.181 -4.811 24.527 hybrid contribution -0.318 -0.475 -0.180 0.599 sum 6.090 -23.656 -4.991 24.932 Atomic orbital electron populations 1.21408 0.85515 1.00422 0.96931 1.44392 1.00380 1.02787 1.86113 1.18872 1.10764 0.87842 1.21059 0.90353 1.25606 0.97934 0.95866 0.97481 1.69777 1.44679 0.99617 1.41402 0.87012 0.81847 0.77353 0.82349 1.21516 1.23270 1.18913 1.21562 0.97887 0.86550 0.90227 1.22555 0.92009 0.81741 1.01977 0.92061 1.22027 1.02029 0.98818 0.92983 1.21629 0.99082 0.97111 0.98505 1.21916 0.99204 0.96391 0.99457 1.23232 1.01773 0.98397 0.83035 1.48210 1.51087 1.26118 1.05335 1.17603 0.80318 0.82862 0.84991 1.90977 1.54751 1.62011 1.30253 1.21975 1.00849 0.98111 0.88309 1.67773 1.13041 1.05702 1.23690 1.23327 0.95847 0.92559 0.98671 1.18702 0.95302 0.83722 0.94549 1.91588 1.77561 1.43617 1.96789 1.21720 1.01784 0.94992 0.99692 1.18266 0.96187 0.90500 0.82871 1.91700 1.92679 1.78657 1.43847 0.96168 0.91998 0.97332 0.92826 0.92518 0.91003 0.91620 0.88561 0.92245 0.92656 0.91979 0.91529 0.83310 0.92161 0.79944 0.81434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.34 8.51 59.85 0.51 2.85 16 2 N -0.61 -15.22 2.13 -181.12 -0.39 -15.60 16 3 C -0.26 -7.27 8.59 -15.06 -0.13 -7.40 16 4 H 0.08 2.45 8.06 -52.48 -0.42 2.03 16 5 C 0.03 0.88 5.14 -17.43 -0.09 0.79 16 6 N -0.91 -28.15 13.97 55.49 0.78 -27.38 16 7 Si 0.88 22.33 22.67 -169.99 -3.85 18.48 16 8 H -0.29 -7.14 6.59 56.52 0.37 -6.77 16 9 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 10 H -0.26 -6.33 6.03 56.52 0.34 -5.99 16 11 C 0.16 3.64 3.66 -4.04 -0.01 3.62 16 12 C 0.12 2.34 3.24 -67.37 -0.22 2.12 16 13 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 14 C -0.12 -2.40 4.59 -26.39 -0.12 -2.52 16 15 C -0.13 -1.97 5.88 -26.69 -0.16 -2.13 16 16 C -0.13 -1.68 6.08 -26.61 -0.16 -1.85 16 17 C 0.06 0.74 6.02 -3.71 -0.02 0.72 16 18 N -0.58 -9.35 2.97 -166.05 -0.49 -9.84 16 19 C 0.56 9.17 7.58 -12.31 -0.09 9.08 16 20 O -0.51 -9.90 10.75 5.32 0.06 -9.84 16 21 C 0.05 0.58 6.64 -82.96 -0.55 0.03 16 22 N -0.39 -3.86 5.99 -9.70 -0.06 -3.92 16 23 C 0.06 0.38 11.17 -17.47 -0.20 0.19 16 24 C 0.10 0.68 7.35 -39.12 -0.29 0.39 16 25 F -0.12 -0.78 17.28 2.25 0.04 -0.74 16 26 C -0.15 -1.19 10.14 -39.18 -0.40 -1.59 16 27 C 0.14 1.63 7.30 -38.84 -0.28 1.34 16 28 F -0.09 -1.25 15.58 2.25 0.04 -1.21 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 1.50 5.14 -51.93 -0.27 1.23 16 31 H 0.01 0.18 7.19 -51.93 -0.37 -0.19 16 32 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 33 H 0.06 1.26 6.63 -51.93 -0.34 0.92 16 34 H 0.07 1.74 6.68 -51.93 -0.35 1.39 16 35 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.10 2.23 3.70 -51.93 -0.19 2.04 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.15 1.65 3.68 -97.21 -0.36 1.29 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.18 0.61 8.06 -52.48 -0.42 0.19 16 44 H 0.17 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 343.60 15.07 5.18 5.18 Total: -1.00 -32.40 343.60 -6.68 -39.08 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -5.76 Total: 0.15 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: -2.21 Total: 5.65 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: -0.16 Total: -56.74 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.06 Total: -9.84 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.07 Total: -1.95 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -3.85 Total: 18.48 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.40 -6.68 -39.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158128843.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.697 kcal (2) G-P(sol) polarization free energy of solvation -32.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds