Wall clock time and date at job start Sat Apr 11 2020 05:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46956 * 111.00293 * 2 1 4 4 C 1.53056 * 109.38342 * 183.17592 * 3 2 1 5 5 N 1.46963 * 109.35944 * 301.62902 * 4 3 2 6 6 C 1.46903 * 110.99595 * 183.16796 * 5 4 3 7 7 C 1.53000 * 109.47135 * 46.18010 * 6 5 4 8 8 C 1.52997 * 109.47021 * 180.02562 * 7 6 5 9 9 N 1.46503 * 109.47196 * 179.97438 * 8 7 6 10 10 C 1.38536 * 120.00106 * 179.97438 * 9 8 7 11 11 C 1.40044 * 120.45084 * 359.73013 * 10 9 8 12 12 C 1.38796 * 118.59236 * 179.72985 * 11 10 9 13 13 Cl 1.73602 * 120.33783 * 180.26088 * 12 11 10 14 14 N 1.32204 * 119.32541 * 0.54232 * 12 11 10 15 15 C 1.33419 * 120.85992 * 359.71531 * 14 12 11 16 16 C 1.41576 * 119.23576 * 180.02562 * 15 14 12 17 17 H 1.08003 * 120.00070 * 179.97438 * 16 15 14 18 18 C 1.40054 * 120.00137 * 359.97438 * 16 15 14 19 19 N 1.30692 * 119.99981 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99944 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47268 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47117 * 119.99961 * 20 18 16 23 23 H 1.48503 * 109.46716 * 239.99808 * 20 18 16 24 24 N 1.32571 * 120.44812 * 180.02562 * 10 9 8 25 25 C 1.46956 * 110.89784 * 59.28921 * 5 4 3 26 26 C 1.46962 * 110.99604 * 123.79812 * 2 1 3 27 27 H 1.09006 * 109.46670 * 60.00118 * 1 2 3 28 28 H 1.09000 * 109.47249 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47127 * 300.00706 * 1 2 3 30 30 H 1.09002 * 109.48806 * 303.15319 * 3 2 1 31 31 H 1.09002 * 109.49141 * 63.19591 * 3 2 1 32 32 H 1.08992 * 109.49038 * 61.57437 * 4 3 2 33 33 H 1.08994 * 109.48641 * 181.64718 * 4 3 2 34 34 H 1.08994 * 109.47069 * 166.17990 * 6 5 4 35 35 H 1.09001 * 109.47054 * 286.17919 * 6 5 4 36 36 H 1.09005 * 109.46953 * 299.99531 * 7 6 5 37 37 H 1.08991 * 109.47188 * 60.00097 * 7 6 5 38 38 H 1.09004 * 109.46942 * 299.99929 * 8 7 6 39 39 H 1.09001 * 109.47310 * 59.99823 * 8 7 6 40 40 H 0.97001 * 119.99809 * 0.02562 * 9 8 7 41 41 H 1.07998 * 120.69778 * 359.97388 * 11 10 9 42 42 H 0.96997 * 120.00265 * 180.02562 * 19 18 16 43 43 H 1.09002 * 109.48806 * 180.71933 * 25 5 4 44 44 H 1.09003 * 109.49203 * 60.65575 * 25 5 4 45 45 H 1.09001 * 109.48625 * 296.77747 * 26 2 1 46 46 H 1.09003 * 109.48941 * 56.82355 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5236 1.3295 -0.0800 5 7 4.0501 0.5658 1.0599 6 6 5.5191 0.5658 1.0600 7 6 6.0292 1.9863 0.8095 8 6 7.5591 1.9861 0.8090 9 7 8.0476 3.3462 0.5685 10 6 9.4096 3.5954 0.5245 11 6 10.3280 2.5553 0.7143 12 6 11.6836 2.8474 0.6566 13 17 12.8614 1.5914 0.8786 14 7 12.0689 4.0927 0.4366 15 6 11.1727 5.0660 0.2645 16 6 11.6235 6.3876 0.0304 17 1 10.9089 7.1849 -0.1110 18 6 12.9963 6.6610 -0.0178 19 7 13.8612 5.6963 0.1538 20 14 13.5910 8.4048 -0.3260 21 1 12.4215 9.3057 -0.4859 22 1 14.4121 8.8584 0.8252 23 1 14.4124 8.4363 -1.5628 24 7 9.8614 4.8229 0.3081 25 6 3.5234 -0.8061 1.0599 26 6 1.9956 -0.7632 1.1402 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.6014 1.9128 -0.8603 31 1 1.6935 1.8775 0.9171 32 1 3.8258 0.8485 -1.0102 33 1 3.9176 2.3453 -0.0506 34 1 5.8823 0.2143 2.0257 35 1 5.8824 -0.0949 0.2728 36 1 5.6659 2.3377 -0.1563 37 1 5.6659 2.6469 1.5967 38 1 7.9227 1.6345 1.7746 39 1 7.9221 1.3256 0.0216 40 1 7.4173 4.0724 0.4409 41 1 9.9884 1.5466 0.8975 42 1 14.8119 5.8857 0.1208 43 1 3.9176 -1.3470 1.9202 44 1 3.8253 -1.3116 0.1426 45 1 1.6936 -0.2820 2.0704 46 1 1.6009 -1.7789 1.1113 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161703305.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:52 Heat of formation + Delta-G solvation = 55.540107 kcal Electronic energy + Delta-G solvation = -26095.267836 eV Core-core repulsion = 22273.768366 eV Total energy + Delta-G solvation = -3821.499470 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.72264 -39.04247 -36.86818 -35.67711 -35.39581 -33.60397 -32.22531 -31.29102 -30.87390 -29.43066 -27.96189 -26.40559 -25.01331 -24.20107 -23.32342 -22.21499 -21.41905 -20.93534 -20.01709 -17.95253 -16.85695 -16.29172 -16.04300 -15.82504 -15.43677 -15.25413 -15.07596 -14.90636 -14.61787 -14.39342 -14.03505 -13.68976 -13.51024 -13.39944 -12.90813 -12.80497 -12.74037 -12.46189 -12.30171 -11.76918 -11.63979 -11.51903 -11.39760 -11.35467 -11.32583 -11.04111 -11.02003 -10.82231 -10.74434 -10.35360 -10.18146 -9.92115 -9.12111 -9.01839 -8.79482 -8.56686 -8.25116 -7.48149 -7.14966 -6.56500 -4.79469 2.52952 2.97506 2.98273 3.06293 3.12171 3.13502 3.47838 3.55648 3.84895 3.95262 4.51309 4.62285 4.63946 4.71128 4.85517 4.91045 4.97350 5.07266 5.11506 5.15010 5.16794 5.23765 5.40050 5.46329 5.46832 5.51145 5.56251 5.68085 5.70399 5.73106 5.85659 6.03394 6.10597 6.10653 6.37729 6.43630 6.55547 6.58781 6.79633 6.80505 6.83497 6.94583 7.14233 7.72605 8.12450 8.21499 8.53739 8.60330 9.06245 10.09588 10.24405 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.018630 B = 0.001950 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.557813 B =14354.630136 C =15729.900088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.547 5.547 3 C 0.056 3.944 4 C 0.049 3.951 5 N -0.540 5.540 6 C 0.060 3.940 7 C -0.133 4.133 8 C 0.139 3.861 9 N -0.730 5.730 10 C 0.455 3.545 11 C -0.405 4.405 12 C 0.269 3.731 13 Cl -0.083 7.083 14 N -0.527 5.527 15 C 0.434 3.566 16 C -0.395 4.395 17 H 0.096 0.904 18 C 0.065 3.935 19 N -0.702 5.702 20 Si 0.919 3.081 21 H -0.258 1.258 22 H -0.272 1.272 23 H -0.272 1.272 24 N -0.642 5.642 25 C 0.056 3.944 26 C 0.057 3.943 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.026 0.974 30 H 0.079 0.921 31 H 0.043 0.957 32 H 0.043 0.957 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.039 0.961 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.397 0.603 41 H 0.110 0.890 42 H 0.276 0.724 43 H 0.080 0.920 44 H 0.043 0.957 45 H 0.042 0.958 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.405 -10.471 0.955 22.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.272 5.272 3 C -0.072 4.072 4 C -0.079 4.079 5 N -0.265 5.265 6 C -0.068 4.068 7 C -0.171 4.171 8 C 0.013 3.987 9 N -0.367 5.367 10 C 0.208 3.792 11 C -0.438 4.438 12 C 0.088 3.912 13 Cl -0.055 7.055 14 N -0.249 5.249 15 C 0.198 3.802 16 C -0.430 4.430 17 H 0.114 0.886 18 C -0.163 4.163 19 N -0.323 5.323 20 Si 0.742 3.258 21 H -0.181 1.181 22 H -0.197 1.197 23 H -0.197 1.197 24 N -0.372 5.372 25 C -0.072 4.072 26 C -0.071 4.071 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.044 0.956 30 H 0.097 0.903 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.107 0.893 34 H 0.099 0.901 35 H 0.057 0.943 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.232 0.768 41 H 0.129 0.871 42 H 0.088 0.912 43 H 0.099 0.901 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -18.697 -9.832 0.843 21.142 hybrid contribution -0.073 -0.204 0.037 0.220 sum -18.770 -10.037 0.880 21.303 Atomic orbital electron populations 1.22343 0.87161 1.02046 1.00750 1.62165 1.07860 1.14243 1.42941 1.22197 0.94798 0.89106 1.01104 1.22300 0.93993 0.99420 0.92176 1.62219 1.07740 1.13696 1.42846 1.22013 0.86467 0.96580 1.01707 1.21894 0.94992 0.97216 1.02990 1.21074 0.92453 0.84404 1.00733 1.44015 1.03162 1.08746 1.80783 1.18131 0.84169 0.89496 0.87400 1.20913 0.91857 0.99589 1.31407 1.21445 0.85878 0.90362 0.93561 1.98293 1.61390 1.50580 1.95236 1.68593 1.37283 0.97259 1.21741 1.19481 0.80879 0.92498 0.87322 1.19390 0.91917 0.91679 1.39986 0.88575 1.26136 0.96803 0.99510 0.93853 1.70158 1.02760 1.32555 1.26791 0.86082 0.79556 0.81397 0.78733 1.18131 1.19663 1.19673 1.68230 1.18099 1.19312 1.31532 1.22155 0.94218 0.89561 1.01263 1.22168 0.94639 0.98373 0.91955 0.91313 0.91397 0.95570 0.90288 0.93918 0.93874 0.89332 0.90130 0.94285 0.91057 0.90391 0.92375 0.92604 0.76843 0.87150 0.91226 0.90132 0.93867 0.93946 0.90348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.60 60.06 0.58 0.74 16 2 N -0.55 -4.53 4.97 -242.75 -1.21 -5.74 16 3 C 0.06 0.46 5.62 -3.76 -0.02 0.44 16 4 C 0.05 0.44 4.93 -3.76 -0.02 0.42 16 5 N -0.54 -4.99 4.86 -234.46 -1.14 -6.13 16 6 C 0.06 0.56 5.28 -3.82 -0.02 0.54 16 7 C -0.13 -1.35 4.59 -26.73 -0.12 -1.47 16 8 C 0.14 1.85 4.92 -4.04 -0.02 1.83 16 9 N -0.73 -12.69 5.71 -60.25 -0.34 -13.03 16 10 C 0.46 10.39 7.71 -154.98 -1.19 9.19 16 11 C -0.40 -9.22 9.23 -38.70 -0.36 -9.58 16 12 C 0.27 6.73 7.33 -17.18 -0.13 6.60 16 13 Cl -0.08 -1.77 29.15 -51.86 -1.51 -3.29 16 14 N -0.53 -14.81 7.86 -9.84 -0.08 -14.89 16 15 C 0.43 12.25 7.37 -158.35 -1.17 11.09 16 16 C -0.39 -10.68 9.37 -37.63 -0.35 -11.03 16 17 H 0.10 2.49 7.85 -52.48 -0.41 2.07 16 18 C 0.06 1.63 5.50 -17.36 -0.10 1.54 16 19 N -0.70 -18.52 11.42 55.55 0.63 -17.89 16 20 Si 0.92 18.36 29.56 -169.99 -5.02 13.34 16 21 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 22 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 23 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 24 N -0.64 -16.77 10.39 -11.89 -0.12 -16.90 16 25 C 0.06 0.46 5.58 -3.77 -0.02 0.44 16 26 C 0.06 0.44 5.62 -3.76 -0.02 0.42 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.38 8.13 -51.93 -0.42 -0.05 16 29 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.09 0.76 5.99 -51.93 -0.31 0.45 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.04 0.36 8.08 -51.93 -0.42 -0.06 16 36 H 0.07 0.71 6.26 -51.93 -0.33 0.38 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.79 7.96 -51.93 -0.41 0.37 16 39 H 0.06 0.76 7.98 -51.93 -0.41 0.34 16 40 H 0.40 6.43 8.60 -40.82 -0.35 6.07 16 41 H 0.11 2.21 6.85 -52.49 -0.36 1.85 16 42 H 0.28 6.56 8.29 -40.82 -0.34 6.22 16 43 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.08 0.50 8.13 -51.93 -0.42 0.08 16 LS Contribution 383.42 15.07 5.78 5.78 Total: -1.00 -30.59 383.42 -13.19 -43.78 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -7.21 Total: 3.80 kcal Atomic # 6 Polarization: 14.12 SS G_CDS: -2.96 Total: 11.16 kcal Atomic # 7 Polarization: -72.31 SS G_CDS: -2.26 Total: -74.57 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.02 Total: 13.34 kcal Atomic # 17 Polarization: -1.77 SS G_CDS: -1.51 Total: -3.29 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.59 -13.19 -43.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161703305.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.320 kcal (2) G-P(sol) polarization free energy of solvation -30.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds