Wall clock time and date at job start Sat Apr 11 2020 05:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 114.00001 * 2 1 4 4 C 1.50702 * 109.47464 * 179.97438 * 3 2 1 5 5 C 1.35135 * 125.61301 * 89.99298 * 4 3 2 6 6 C 1.40362 * 107.10939 * 180.02562 * 5 4 3 7 7 C 1.36545 * 106.71195 * 0.02562 * 6 5 4 8 8 C 1.46658 * 125.98797 * 179.97438 * 7 6 5 9 9 O 1.21693 * 120.00161 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99639 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99665 * 179.72443 * 10 8 7 12 12 C 1.53004 * 109.47198 * 180.27868 * 11 10 8 13 13 C 1.52997 * 109.47000 * 179.97438 * 12 11 10 14 14 N 1.46904 * 109.46983 * 179.97438 * 13 12 11 15 15 C 1.46903 * 111.00204 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.46998 * 179.97438 * 15 14 13 17 17 O 1.21295 * 120.00000 * 0.02562 * 16 15 14 18 18 N 1.34775 * 119.99798 * 179.97438 * 16 15 14 19 19 C 1.37094 * 120.00027 * 180.02562 * 18 16 15 20 20 H 1.07996 * 120.00216 * 0.02562 * 19 18 16 21 21 C 1.38956 * 120.00110 * 180.02562 * 19 18 16 22 22 N 1.31408 * 119.99736 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00089 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47206 * 89.99962 * 23 21 19 25 25 H 1.48498 * 109.46991 * 210.00427 * 23 21 19 26 26 H 1.48499 * 109.46978 * 330.00358 * 23 21 19 27 27 O 1.33922 * 125.61589 * 270.32523 * 4 3 2 28 28 H 1.08992 * 109.47144 * 300.00172 * 1 2 3 29 29 H 1.08996 * 109.46872 * 60.00408 * 1 2 3 30 30 H 1.08999 * 109.46684 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47121 * 59.99254 * 3 2 1 32 32 H 1.09002 * 109.47000 * 299.99696 * 3 2 1 33 33 H 1.07993 * 126.44513 * 0.03823 * 5 4 3 34 34 H 1.08007 * 126.64372 * 179.97438 * 6 5 4 35 35 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 36 36 H 1.09009 * 109.47454 * 300.27637 * 11 10 8 37 37 H 1.08998 * 109.47492 * 60.27932 * 11 10 8 38 38 H 1.08995 * 109.46638 * 300.00121 * 12 11 10 39 39 H 1.09006 * 109.47139 * 60.00254 * 12 11 10 40 40 H 1.08995 * 109.47672 * 299.99669 * 13 12 11 41 41 H 1.09007 * 109.47288 * 60.00489 * 13 12 11 42 42 H 1.00901 * 110.99709 * 56.04986 * 14 13 12 43 43 H 1.08999 * 109.46830 * 300.00221 * 15 14 13 44 44 H 1.09000 * 109.46616 * 60.00377 * 15 14 13 45 45 H 0.97003 * 119.99741 * 0.02562 * 18 16 15 46 46 H 0.97007 * 120.00002 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1865 0.0006 5 6 4.2975 1.1241 -1.0976 6 6 5.6242 1.0186 -0.6516 7 6 5.5810 1.0215 0.7131 8 6 6.7360 0.9289 1.6121 9 8 7.8592 0.8390 1.1524 10 7 6.5535 0.9434 2.9474 11 6 7.7068 0.8449 3.8454 12 6 7.2266 0.8775 5.2977 13 6 8.4311 0.7739 6.2355 14 7 7.9701 0.8059 7.6300 15 6 9.1022 0.7090 8.5611 16 6 8.5914 0.7456 9.9784 17 8 7.4013 0.8424 10.1919 18 7 9.4569 0.6697 11.0088 19 6 8.9922 0.7024 12.2981 20 1 7.9326 0.7887 12.4883 21 6 9.8846 0.6247 13.3605 22 7 11.1739 0.5204 13.1291 23 14 9.2515 0.6701 15.1173 24 1 8.9687 -0.7132 15.5775 25 1 10.2776 1.2846 15.9975 26 1 8.0049 1.4750 15.1735 27 8 4.2891 1.1190 1.0897 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6885 1.8464 0.8899 32 1 1.6887 1.8463 -0.8900 33 1 3.9663 1.1506 -2.1252 34 1 6.5079 0.9479 -1.2685 35 1 5.6582 1.0147 3.3138 36 1 8.2343 -0.0905 3.6581 37 1 8.3796 1.6835 3.6662 38 1 6.6992 1.8128 5.4850 39 1 6.5539 0.0387 5.4770 40 1 8.9582 -0.1615 6.0481 41 1 9.1042 1.6125 6.0565 42 1 7.2947 0.0768 7.8043 43 1 9.6340 -0.2270 8.3902 44 1 9.7797 1.5470 8.3977 45 1 10.4086 0.5919 10.8380 46 1 11.7970 0.4665 13.8707 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162135251.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:56 Heat of formation + Delta-G solvation = -102.770097 kcal Electronic energy + Delta-G solvation = -27052.651969 eV Core-core repulsion = 22751.285737 eV Total energy + Delta-G solvation = -4301.366231 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.18523 -39.82193 -38.44661 -38.31468 -36.62079 -35.00754 -33.86605 -33.60718 -32.05583 -31.35635 -31.06030 -28.20949 -27.10544 -26.13279 -24.82710 -23.45910 -22.35413 -22.07584 -21.74326 -20.55593 -19.26291 -18.69417 -17.86867 -17.44570 -16.80826 -16.61038 -16.48938 -16.31592 -16.07704 -15.81619 -15.26493 -14.89943 -14.59656 -14.37106 -14.25387 -14.18026 -13.62477 -13.51637 -13.44632 -13.36621 -13.28101 -12.90505 -12.51968 -12.10021 -12.06766 -11.87687 -11.82610 -11.47960 -11.43735 -11.09200 -10.95498 -10.66127 -10.50503 -10.41503 -10.39087 -10.21470 -9.54453 -9.50737 -9.06532 -8.47183 -8.07490 -7.95751 -6.41405 -3.82264 0.52575 1.74113 2.06447 2.75054 2.80402 3.18149 3.26800 3.32846 3.35078 3.91129 4.05528 4.09066 4.29220 4.31319 4.41051 4.55097 4.61955 4.74858 4.79151 4.79772 4.92310 5.02801 5.11723 5.15102 5.17096 5.26027 5.29045 5.37309 5.41244 5.47236 5.60248 5.78799 5.85784 5.89682 5.98003 5.99684 6.06822 6.27103 6.37203 6.38206 7.06856 7.18949 7.55492 7.64125 7.68897 8.06609 8.61593 9.18127 9.54645 10.06074 10.76320 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018833 B = 0.001361 C = 0.001277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.393169 B =20566.042914 C =21927.568536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.139 3.861 4 C 0.012 3.988 5 C -0.193 4.193 6 C -0.121 4.121 7 C -0.067 4.067 8 C 0.602 3.398 9 O -0.518 6.518 10 N -0.716 5.716 11 C 0.119 3.881 12 C -0.130 4.130 13 C 0.063 3.937 14 N -0.670 5.670 15 C 0.051 3.949 16 C 0.440 3.560 17 O -0.584 6.584 18 N -0.563 5.563 19 C -0.300 4.300 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 O -0.156 6.156 28 H 0.047 0.953 29 H 0.046 0.954 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.159 0.841 34 H 0.164 0.836 35 H 0.407 0.593 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.070 0.930 40 H 0.030 0.970 41 H 0.075 0.925 42 H 0.349 0.651 43 H 0.044 0.956 44 H 0.087 0.913 45 H 0.392 0.608 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.220 0.984 -30.403 34.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C 0.062 3.938 4 C -0.040 4.040 5 C -0.212 4.212 6 C -0.142 4.142 7 C -0.120 4.120 8 C 0.388 3.612 9 O -0.396 6.396 10 N -0.367 5.367 11 C -0.004 4.004 12 C -0.168 4.168 13 C -0.067 4.067 14 N -0.302 5.302 15 C -0.082 4.082 16 C 0.226 3.774 17 O -0.468 6.468 18 N -0.200 5.200 19 C -0.430 4.430 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 O -0.051 6.051 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.106 0.894 33 H 0.177 0.823 34 H 0.182 0.818 35 H 0.242 0.758 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.089 0.911 40 H 0.049 0.951 41 H 0.093 0.907 42 H 0.168 0.832 43 H 0.062 0.938 44 H 0.105 0.895 45 H 0.226 0.774 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.044 1.502 -30.057 33.645 hybrid contribution 0.066 -0.737 0.710 1.026 sum -14.977 0.765 -29.347 32.957 Atomic orbital electron populations 1.22833 0.79715 1.03552 1.00462 1.87990 1.20549 1.26385 1.95548 1.20752 0.83953 0.86162 1.02898 1.22242 0.92835 1.04626 0.84285 1.21650 0.92362 1.07327 0.99863 1.21989 0.98676 1.00606 0.92924 1.22142 0.82033 1.12995 0.94781 1.16512 0.85926 0.77166 0.81587 1.90904 1.22112 1.50423 1.76161 1.45923 1.11627 1.73787 1.05382 1.21442 0.87713 1.02909 0.88344 1.21755 0.99142 1.03956 0.91988 1.21822 0.95999 1.00591 0.88332 1.60047 1.14290 1.54938 1.00948 1.21671 0.93191 1.00925 0.92414 1.19813 0.87227 0.84488 0.85899 1.90519 1.16012 1.55176 1.85132 1.41862 1.08885 1.63935 1.05316 1.19711 0.94925 1.47282 0.81073 0.87917 1.25264 0.94972 0.97285 1.00394 1.69614 1.01383 1.50230 1.33059 0.85851 0.78462 0.78469 0.81463 1.20432 1.20914 1.19410 1.83997 1.16239 1.70065 1.34835 0.93451 0.93557 0.88978 0.90851 0.89411 0.82304 0.81850 0.75750 0.90916 0.90671 0.89973 0.91104 0.95148 0.90693 0.83162 0.93785 0.89526 0.77435 0.91868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 11.01 101.05 1.11 1.22 16 2 O -0.39 -2.75 10.69 -35.23 -0.38 -3.13 16 3 C 0.14 0.73 6.46 36.01 0.23 0.96 16 4 C 0.01 0.10 6.94 -35.41 -0.25 -0.15 16 5 C -0.19 -1.41 10.77 -39.89 -0.43 -1.84 16 6 C -0.12 -1.08 10.62 -39.39 -0.42 -1.50 16 7 C -0.07 -0.68 7.13 -36.80 -0.26 -0.94 16 8 C 0.60 6.82 7.79 -12.86 -0.10 6.72 16 9 O -0.52 -7.35 16.86 5.20 0.09 -7.26 16 10 N -0.72 -6.68 5.55 -61.62 -0.34 -7.02 16 11 C 0.12 1.11 5.67 -4.04 -0.02 1.08 16 12 C -0.13 -1.23 5.59 -26.73 -0.15 -1.38 16 13 C 0.06 0.73 5.69 -3.82 -0.02 0.71 16 14 N -0.67 -10.60 6.12 -115.05 -0.70 -11.31 16 15 C 0.05 0.89 6.17 -4.97 -0.03 0.86 16 16 C 0.44 10.45 7.82 -10.99 -0.09 10.37 16 17 O -0.58 -15.94 15.78 5.54 0.09 -15.85 16 18 N -0.56 -14.36 5.29 -10.96 -0.06 -14.42 16 19 C -0.30 -8.43 9.68 -14.93 -0.14 -8.57 16 20 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.60 13.05 55.50 0.72 -23.88 16 23 Si 0.93 21.09 29.55 -169.99 -5.02 16.07 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 27 O -0.16 -1.47 10.40 5.02 0.05 -1.42 16 28 H 0.05 0.13 8.14 -51.93 -0.42 -0.29 16 29 H 0.05 0.10 8.14 -51.93 -0.42 -0.33 16 30 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.16 0.74 8.06 -52.49 -0.42 0.32 16 34 H 0.16 1.28 8.06 -52.48 -0.42 0.85 16 35 H 0.41 3.13 8.23 -40.82 -0.34 2.79 16 36 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.35 5.66 8.43 -39.29 -0.33 5.33 16 43 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 45 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 46 H 0.27 7.00 8.31 -40.82 -0.34 6.67 16 LS Contribution 403.44 15.07 6.08 6.08 Total: -1.00 -35.01 403.44 -6.98 -41.99 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: -6.84 Total: 12.11 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: -0.66 Total: 8.04 kcal Atomic # 7 Polarization: -56.24 SS G_CDS: -0.38 Total: -56.62 kcal Atomic # 8 Polarization: -27.51 SS G_CDS: -0.15 Total: -27.66 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.01 -6.98 -41.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162135251.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.782 kcal (2) G-P(sol) polarization free energy of solvation -35.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds