Wall clock time and date at job start Sat Apr 11 2020 05:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 114.00001 * 2 1 4 4 C 1.50702 * 109.47464 * 179.97438 * 3 2 1 5 5 C 1.35135 * 125.61301 * 89.99298 * 4 3 2 6 6 C 1.40362 * 107.10939 * 180.02562 * 5 4 3 7 7 C 1.36545 * 106.71195 * 0.02562 * 6 5 4 8 8 C 1.46658 * 125.98797 * 179.97438 * 7 6 5 9 9 O 1.21693 * 120.00161 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99639 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99665 * 179.72443 * 10 8 7 12 12 C 1.53004 * 109.47198 * 180.27868 * 11 10 8 13 13 C 1.52997 * 109.47000 * 179.97438 * 12 11 10 14 14 N 1.46904 * 109.46983 * 179.97438 * 13 12 11 15 15 C 1.46903 * 111.00204 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.46998 * 179.97438 * 15 14 13 17 17 O 1.21295 * 120.00000 * 0.02562 * 16 15 14 18 18 N 1.34775 * 119.99798 * 179.97438 * 16 15 14 19 19 C 1.37094 * 120.00027 * 180.02562 * 18 16 15 20 20 H 1.07996 * 120.00216 * 0.02562 * 19 18 16 21 21 C 1.38956 * 120.00110 * 180.02562 * 19 18 16 22 22 N 1.31408 * 119.99736 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00089 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47206 * 89.99962 * 23 21 19 25 25 H 1.48498 * 109.46991 * 210.00427 * 23 21 19 26 26 H 1.48499 * 109.46978 * 330.00358 * 23 21 19 27 27 O 1.33922 * 125.61589 * 270.32523 * 4 3 2 28 28 H 1.08992 * 109.47144 * 300.00172 * 1 2 3 29 29 H 1.08996 * 109.46872 * 60.00408 * 1 2 3 30 30 H 1.08999 * 109.46684 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47121 * 59.99254 * 3 2 1 32 32 H 1.09002 * 109.47000 * 299.99696 * 3 2 1 33 33 H 1.07993 * 126.44513 * 0.03823 * 5 4 3 34 34 H 1.08007 * 126.64372 * 179.97438 * 6 5 4 35 35 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 36 36 H 1.09009 * 109.47454 * 300.27637 * 11 10 8 37 37 H 1.08998 * 109.47492 * 60.27932 * 11 10 8 38 38 H 1.08995 * 109.46638 * 300.00121 * 12 11 10 39 39 H 1.09006 * 109.47139 * 60.00254 * 12 11 10 40 40 H 1.08995 * 109.47672 * 299.99669 * 13 12 11 41 41 H 1.09007 * 109.47288 * 60.00489 * 13 12 11 42 42 H 1.00901 * 110.99709 * 56.04986 * 14 13 12 43 43 H 1.08999 * 109.46830 * 300.00221 * 15 14 13 44 44 H 1.09000 * 109.46616 * 60.00377 * 15 14 13 45 45 H 0.97003 * 119.99741 * 0.02562 * 18 16 15 46 46 H 0.97007 * 120.00002 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1865 0.0006 5 6 4.2975 1.1241 -1.0976 6 6 5.6242 1.0186 -0.6516 7 6 5.5810 1.0215 0.7131 8 6 6.7360 0.9289 1.6121 9 8 7.8592 0.8390 1.1524 10 7 6.5535 0.9434 2.9474 11 6 7.7068 0.8449 3.8454 12 6 7.2266 0.8775 5.2977 13 6 8.4311 0.7739 6.2355 14 7 7.9701 0.8059 7.6300 15 6 9.1022 0.7090 8.5611 16 6 8.5914 0.7456 9.9784 17 8 7.4013 0.8424 10.1919 18 7 9.4569 0.6697 11.0088 19 6 8.9922 0.7024 12.2981 20 1 7.9326 0.7887 12.4883 21 6 9.8846 0.6247 13.3605 22 7 11.1739 0.5204 13.1291 23 14 9.2515 0.6701 15.1173 24 1 8.9687 -0.7132 15.5775 25 1 10.2776 1.2846 15.9975 26 1 8.0049 1.4750 15.1735 27 8 4.2891 1.1190 1.0897 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6885 1.8464 0.8899 32 1 1.6887 1.8463 -0.8900 33 1 3.9663 1.1506 -2.1252 34 1 6.5079 0.9479 -1.2685 35 1 5.6582 1.0147 3.3138 36 1 8.2343 -0.0905 3.6581 37 1 8.3796 1.6835 3.6662 38 1 6.6992 1.8128 5.4850 39 1 6.5539 0.0387 5.4770 40 1 8.9582 -0.1615 6.0481 41 1 9.1042 1.6125 6.0565 42 1 7.2947 0.0768 7.8043 43 1 9.6340 -0.2270 8.3902 44 1 9.7797 1.5470 8.3977 45 1 10.4086 0.5919 10.8380 46 1 11.7970 0.4665 13.8707 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162135251.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:55 Heat of formation + Delta-G solvation = -131.170937 kcal Electronic energy + Delta-G solvation = -27053.883522 eV Core-core repulsion = 22751.285737 eV Total energy + Delta-G solvation = -4302.597784 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.82599 -40.67880 -40.15096 -38.84294 -37.69870 -36.20286 -35.71837 -34.26194 -33.30538 -32.81669 -31.98380 -29.02288 -28.14323 -26.83124 -26.19604 -24.66770 -23.12438 -22.74534 -22.59024 -21.30304 -21.04587 -19.91954 -19.44122 -17.95940 -17.88773 -17.38014 -17.26276 -17.15307 -16.94910 -16.64169 -16.55936 -16.25080 -15.99739 -15.59374 -15.42533 -15.06226 -14.88217 -14.72461 -14.30873 -14.19720 -14.04967 -13.59501 -13.56348 -13.38813 -13.20084 -12.92647 -12.86571 -12.73568 -12.46051 -12.41507 -12.38211 -12.11773 -11.88444 -11.56124 -11.50653 -11.13538 -10.76133 -10.36634 -10.35454 -10.01837 -9.71686 -9.33442 -8.46772 -5.95728 -0.17364 1.13634 1.38336 1.42089 1.42591 1.55097 1.99776 2.02094 2.05014 2.29721 2.91394 2.96458 3.20585 3.51577 3.53692 3.77561 3.84366 3.97912 4.09958 4.14455 4.19702 4.27663 4.33683 4.48433 4.49873 4.53854 4.55555 4.58591 4.58975 4.67089 4.71897 4.75726 4.84278 4.90551 5.07631 5.15710 5.26585 5.29276 5.40852 5.72642 5.88295 6.06703 6.09733 6.30834 6.41032 6.59885 6.88484 7.12317 7.55978 8.11151 8.70585 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018833 B = 0.001361 C = 0.001277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.393169 B =20566.042914 C =21927.568536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.136 3.864 4 C 0.008 3.992 5 C -0.193 4.193 6 C -0.123 4.123 7 C -0.093 4.093 8 C 0.601 3.399 9 O -0.555 6.555 10 N -0.708 5.708 11 C 0.125 3.875 12 C -0.117 4.117 13 C 0.064 3.936 14 N -0.685 5.685 15 C 0.064 3.936 16 C 0.436 3.564 17 O -0.624 6.624 18 N -0.573 5.573 19 C -0.336 4.336 20 H 0.079 0.921 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.994 3.006 24 H -0.270 1.270 25 H -0.271 1.271 26 H -0.273 1.273 27 O -0.165 6.165 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.119 0.881 33 H 0.187 0.813 34 H 0.170 0.830 35 H 0.416 0.584 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.044 0.956 41 H 0.082 0.918 42 H 0.345 0.655 43 H 0.068 0.932 44 H 0.104 0.896 45 H 0.397 0.603 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.955 1.135 -31.378 35.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.336 6.336 3 C 0.061 3.939 4 C -0.044 4.044 5 C -0.212 4.212 6 C -0.144 4.144 7 C -0.146 4.146 8 C 0.388 3.612 9 O -0.436 6.436 10 N -0.358 5.358 11 C 0.001 3.999 12 C -0.155 4.155 13 C -0.066 4.066 14 N -0.317 5.317 15 C -0.068 4.068 16 C 0.224 3.776 17 O -0.511 6.511 18 N -0.210 5.210 19 C -0.466 4.466 20 H 0.097 0.903 21 C -0.212 4.212 22 N -0.561 5.561 23 Si 0.817 3.183 24 H -0.196 1.196 25 H -0.195 1.195 26 H -0.198 1.198 27 O -0.062 6.062 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.112 0.888 31 H 0.101 0.899 32 H 0.136 0.864 33 H 0.204 0.796 34 H 0.187 0.813 35 H 0.252 0.748 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.062 0.938 41 H 0.100 0.900 42 H 0.164 0.836 43 H 0.085 0.915 44 H 0.123 0.877 45 H 0.231 0.769 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.777 1.654 -31.040 34.858 hybrid contribution 0.211 -0.781 0.931 1.233 sum -15.566 0.873 -30.109 33.906 Atomic orbital electron populations 1.22998 0.78125 1.04184 1.01703 1.87932 1.22363 1.27473 1.95835 1.21013 0.82137 0.85916 1.04875 1.22940 0.94099 1.03376 0.84021 1.21991 0.91385 1.06657 1.01150 1.22269 0.99818 0.99597 0.92684 1.21995 0.82212 1.15281 0.95068 1.16667 0.85858 0.76603 0.82057 1.90871 1.23476 1.52420 1.76821 1.45869 1.12134 1.72882 1.04936 1.21362 0.87628 1.02818 0.88044 1.21601 0.98383 1.04052 0.91493 1.21898 0.96943 1.01583 0.86144 1.60047 1.13870 1.55110 1.02673 1.21536 0.93843 1.02843 0.88570 1.20907 0.86544 0.82220 0.87939 1.90486 1.17857 1.56437 1.86281 1.41935 1.09296 1.64599 1.05167 1.19687 0.94271 1.49692 0.82938 0.90293 1.26044 0.95102 0.96184 1.03861 1.69673 1.02073 1.49911 1.34428 0.84918 0.77927 0.78696 0.76729 1.19584 1.19532 1.19800 1.83980 1.16043 1.70395 1.35746 0.92750 0.91753 0.88761 0.89896 0.86376 0.79556 0.81287 0.74789 0.91001 0.90831 0.90268 0.90558 0.93796 0.90003 0.83639 0.91452 0.87748 0.76944 0.91281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 113.37 1.25 1.39 16 2 O -0.42 -5.33 10.69 -148.98 -1.59 -6.92 16 3 C 0.14 1.17 6.46 71.24 0.46 1.63 16 4 C 0.01 0.11 6.94 24.97 0.17 0.29 16 5 C -0.19 -2.53 10.77 22.07 0.24 -2.30 16 6 C -0.12 -2.14 10.62 22.39 0.24 -1.90 16 7 C -0.09 -1.90 7.13 24.07 0.17 -1.73 16 8 C 0.60 13.75 7.79 86.44 0.67 14.42 16 9 O -0.56 -16.05 16.86 -4.33 -0.07 -16.12 16 10 N -0.71 -12.95 5.55 -467.09 -2.59 -15.55 16 11 C 0.12 2.21 5.67 86.38 0.49 2.70 16 12 C -0.12 -2.07 5.59 30.59 0.17 -1.89 16 13 C 0.06 1.35 5.69 86.30 0.49 1.84 16 14 N -0.68 -20.84 6.12 -517.92 -3.17 -24.01 16 15 C 0.06 2.18 6.17 85.56 0.53 2.71 16 16 C 0.44 20.83 7.82 87.66 0.69 21.51 16 17 O -0.62 -34.70 15.78 -3.07 -0.05 -34.75 16 18 N -0.57 -29.54 5.29 -306.99 -1.62 -31.16 16 19 C -0.34 -19.22 9.68 84.04 0.81 -18.41 16 20 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 21 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 22 N -0.92 -49.76 13.05 21.66 0.28 -49.48 16 23 Si 0.99 42.99 29.55 68.60 2.03 45.02 16 24 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 25 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 26 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 27 O -0.17 -3.07 10.40 -4.96 -0.05 -3.12 16 28 H 0.05 0.22 8.14 -2.39 -0.02 0.20 16 29 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 30 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.19 1.25 8.06 -2.91 -0.02 1.22 16 34 H 0.17 2.61 8.06 -2.91 -0.02 2.59 16 35 H 0.42 6.19 8.23 -92.71 -0.76 5.42 16 36 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 37 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 40 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 42 H 0.35 10.94 8.43 -89.69 -0.76 10.19 16 43 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 45 H 0.40 19.38 7.90 -92.71 -0.73 18.65 16 46 H 0.28 14.05 8.31 -92.70 -0.77 13.28 16 Total: -1.00 -76.36 403.44 -1.22 -77.57 By element: Atomic # 1 Polarization: 39.65 SS G_CDS: -1.22 Total: 38.43 kcal Atomic # 6 Polarization: 13.23 SS G_CDS: 6.85 Total: 20.08 kcal Atomic # 7 Polarization: -113.09 SS G_CDS: -7.11 Total: -120.20 kcal Atomic # 8 Polarization: -59.14 SS G_CDS: -1.77 Total: -60.90 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -76.36 -1.22 -77.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162135251.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.598 kcal (2) G-P(sol) polarization free energy of solvation -76.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds