Wall clock time and date at job start Sat Apr 11 2020 05:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.50556 * 2 1 4 4 C 1.53052 * 109.48648 * 239.94467 * 2 1 3 5 5 N 1.46965 * 109.36340 * 181.62801 * 4 2 1 6 6 C 1.39301 * 110.99858 * 183.18611 * 5 4 2 7 7 C 1.39586 * 120.07456 * 179.72855 * 6 5 4 8 8 C 1.38361 * 117.96346 * 179.74142 * 7 6 5 9 9 C 1.39574 * 117.96653 * 0.52697 * 8 7 6 10 10 N 1.39459 * 120.07093 * 179.70762 * 9 8 7 11 11 C 1.38328 * 119.99918 * 356.64027 * 10 9 8 12 12 C 1.38991 * 119.99990 * 298.86360 * 11 10 9 13 13 H 1.07998 * 120.00139 * 154.48779 * 12 11 10 14 14 C 1.40837 * 120.00302 * 334.49201 * 12 11 10 15 15 N 1.30333 * 120.00199 * 163.01816 * 14 12 11 16 16 Si 1.86804 * 119.99593 * 343.02041 * 14 12 11 17 17 H 1.48502 * 109.46954 * 88.50585 * 16 14 12 18 18 H 1.48505 * 109.46835 * 208.50232 * 16 14 12 19 19 H 1.48496 * 109.47086 * 328.50265 * 16 14 12 20 20 C 1.41159 * 120.00068 * 118.86660 * 11 10 9 21 21 C 1.43198 * 119.99809 * 184.90981 * 20 11 10 22 22 N 9.17771 * 155.22293 * 172.68356 * 5 1 2 23 23 C 1.43199 * 120.00168 * 4.90859 * 20 11 10 24 24 N 8.56089 * 147.75230 * 145.89061 * 4 1 2 25 25 N 1.32282 * 119.85697 * 359.72632 * 9 8 7 26 26 N 1.28343 * 122.18626 * 0.02562 * 25 9 8 27 27 C 1.46963 * 110.87653 * 59.32329 * 5 4 2 28 28 C 1.53053 * 109.36284 * 300.67919 * 27 5 4 29 29 N 1.46951 * 109.49124 * 120.05526 * 2 1 3 30 30 H 1.09001 * 109.47108 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47111 * 300.05534 * 1 2 3 32 32 H 1.09006 * 109.47211 * 60.05542 * 1 2 3 33 33 H 1.09002 * 109.49196 * 61.66881 * 4 2 1 34 34 H 1.08997 * 109.49141 * 301.59897 * 4 2 1 35 35 H 1.08000 * 121.01383 * 359.97438 * 7 6 5 36 36 H 1.08003 * 121.01373 * 180.26913 * 8 7 6 37 37 H 0.96997 * 120.00076 * 176.63760 * 10 9 8 38 38 H 0.97006 * 119.99921 * 180.02562 * 15 14 12 39 39 H 1.08998 * 109.48460 * 60.64287 * 27 5 4 40 40 H 1.08995 * 109.48402 * 180.71214 * 27 5 4 41 41 H 1.09001 * 109.48415 * 178.37044 * 28 27 5 42 42 H 1.08997 * 109.48960 * 298.43324 * 28 27 5 43 43 H 1.00906 * 111.00380 * 303.15593 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0406 -0.7226 -1.2488 5 7 3.5097 -0.7552 -1.2265 6 6 4.0136 -1.3431 -2.3845 7 6 5.3924 -1.4663 -2.5635 8 6 5.8449 -2.0620 -3.7274 9 6 4.8947 -2.4924 -4.6547 10 7 5.3023 -3.0931 -5.8454 11 6 6.6495 -3.2003 -6.1402 12 6 7.4258 -2.0546 -6.2700 13 1 8.4895 -2.0998 -6.0891 14 6 6.8252 -0.8349 -6.6374 15 7 7.4582 0.2877 -6.4433 16 14 5.1212 -0.8261 -7.4028 17 1 4.0969 -0.7581 -6.3298 18 1 4.9846 0.3546 -8.2931 19 1 4.9276 -2.0678 -8.1940 20 6 7.2360 -4.4731 -6.3092 21 6 8.6491 -4.5894 -6.5099 22 7 9.7701 -4.6817 -6.6691 23 6 6.4179 -5.6480 -6.2800 24 7 5.7688 -6.5800 -6.2569 25 7 3.6066 -2.3289 -4.4018 26 7 3.1865 -1.7807 -3.3200 27 6 4.0000 -1.4491 -0.0274 28 6 3.4893 -0.7265 1.2214 29 7 2.0203 -0.6938 1.1990 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5147 0.8895 32 1 -0.3634 0.5130 -0.8905 33 1 1.7022 -0.1930 -2.1394 34 1 1.6543 -1.7418 -1.2627 35 1 6.0847 -1.1108 -1.8146 36 1 6.9013 -2.1863 -3.9146 37 1 4.6411 -3.4358 -6.4669 38 1 7.0443 1.1279 -6.6960 39 1 3.6359 -2.4765 -0.0274 40 1 5.0899 -1.4491 -0.0275 41 1 3.8278 -1.2562 2.1119 42 1 3.8755 0.2927 1.2353 43 1 1.6553 -0.2681 2.0379 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169079505.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:01 Heat of formation + Delta-G solvation = 142.703407 kcal Electronic energy + Delta-G solvation = -28716.106864 eV Core-core repulsion = 24797.279585 eV Total energy + Delta-G solvation = -3918.827280 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.09035 -39.36297 -37.85426 -35.66156 -35.13209 -34.85271 -34.06922 -32.71308 -32.35035 -31.35559 -29.00887 -27.53984 -27.49269 -25.90400 -24.04195 -23.13466 -22.13550 -21.25061 -19.98923 -19.32387 -18.21238 -17.62967 -17.32008 -16.50600 -16.43075 -16.13429 -15.55736 -15.31460 -15.21246 -14.74254 -14.23404 -13.95332 -13.82484 -13.39163 -13.12863 -13.09947 -12.85964 -12.73300 -12.64751 -12.30962 -12.17274 -12.06887 -11.82152 -11.71396 -11.65666 -11.50679 -11.36642 -11.23557 -11.18194 -11.08013 -10.95376 -10.77638 -10.51869 -10.07499 -9.99386 -9.41122 -9.01123 -8.74875 -8.37869 -7.94483 -7.38459 -5.58887 1.17676 1.32951 1.88767 2.69216 2.76315 2.81757 3.17943 3.38477 3.51448 3.72817 3.83555 3.92011 3.94056 4.07312 4.18728 4.52137 4.59647 4.82581 4.84755 4.88854 4.99248 5.00124 5.08909 5.12898 5.21016 5.26251 5.37137 5.45033 5.48329 5.58993 5.65128 5.73060 5.82236 5.87366 5.95237 5.99561 6.07332 6.22958 6.29706 6.62274 6.79750 6.81026 6.97748 7.05522 7.12959 7.30356 7.53382 7.73282 7.99268 8.79965 8.99053 8.99622 9.14123 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.014109 B = 0.003360 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.117621 B = 8331.194331 C = 8848.344947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.082 3.918 3 H 0.047 0.953 4 C 0.072 3.928 5 N -0.469 5.469 6 C 0.200 3.800 7 C -0.100 4.100 8 C -0.121 4.121 9 C 0.334 3.666 10 N -0.664 5.664 11 C 0.336 3.664 12 C -0.357 4.357 13 H 0.127 0.873 14 C 0.076 3.924 15 N -0.718 5.718 16 Si 0.912 3.088 17 H -0.243 1.243 18 H -0.281 1.281 19 H -0.246 1.246 20 C -0.293 4.293 21 C 0.322 3.678 22 N -0.522 5.522 23 C 0.305 3.695 24 N -0.524 5.524 25 N -0.283 5.283 26 N -0.249 5.249 27 C 0.057 3.943 28 C 0.061 3.939 29 N -0.689 5.689 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.059 0.941 35 H 0.147 0.853 36 H 0.166 0.834 37 H 0.410 0.590 38 H 0.307 0.693 39 H 0.053 0.947 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.042 0.958 43 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.973 9.279 13.068 18.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.028 4.028 3 H 0.065 0.935 4 C -0.056 4.056 5 N -0.189 5.189 6 C -0.042 4.042 7 C -0.131 4.131 8 C -0.154 4.154 9 C 0.093 3.907 10 N -0.297 5.297 11 C 0.233 3.767 12 C -0.384 4.384 13 H 0.144 0.856 14 C -0.157 4.157 15 N -0.335 5.335 16 Si 0.735 3.265 17 H -0.167 1.167 18 H -0.208 1.208 19 H -0.170 1.170 20 C -0.311 4.311 21 C 0.014 3.986 22 N -0.203 5.203 23 C -0.003 4.003 24 N -0.206 5.206 25 N -0.132 5.132 26 N -0.094 5.094 27 C -0.070 4.070 28 C -0.069 4.069 29 N -0.321 5.321 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.107 0.893 34 H 0.077 0.923 35 H 0.165 0.835 36 H 0.184 0.816 37 H 0.249 0.751 38 H 0.119 0.881 39 H 0.072 0.928 40 H 0.106 0.894 41 H 0.103 0.897 42 H 0.060 0.940 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -10.476 7.664 12.152 17.781 hybrid contribution 0.500 1.006 0.066 1.125 sum -9.976 8.670 12.218 17.999 Atomic orbital electron populations 1.21764 0.93685 1.02864 1.01878 1.21606 0.95356 0.95776 0.90045 0.93519 1.22121 0.84742 1.01198 0.97533 1.59433 1.10768 1.48756 0.99933 1.21136 0.91717 0.97017 0.94332 1.21721 0.94390 0.98645 0.98316 1.22161 1.02611 0.98176 0.92426 1.19735 0.91457 0.92044 0.87509 1.41749 1.06912 1.62229 1.18826 1.16795 0.79008 0.91322 0.89530 1.20148 0.98970 0.90518 1.28755 0.85587 1.26703 1.01513 0.94218 0.93268 1.69396 1.38675 1.00176 1.25273 0.86164 0.79396 0.79985 0.80917 1.16696 1.20795 1.16969 1.12745 0.84001 0.86394 1.47976 1.24579 0.91231 0.92239 0.90589 1.81088 1.12278 1.08543 1.18430 1.25144 0.92536 0.91965 0.90615 1.81097 1.10222 1.10494 1.18779 1.72693 1.12103 1.15500 1.12933 1.72854 1.30390 1.08005 0.98117 1.22349 1.00398 0.96452 0.87767 1.21973 0.87885 0.99604 0.97411 1.60557 1.08243 1.58425 1.04884 0.91590 0.92548 0.91723 0.89270 0.92306 0.83504 0.81644 0.75105 0.88114 0.92838 0.89432 0.89726 0.93980 0.83870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.46 37.16 0.35 -0.76 16 2 C 0.08 0.77 3.19 -67.66 -0.22 0.55 16 3 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 4 C 0.07 0.87 4.08 -3.76 -0.02 0.85 16 5 N -0.47 -5.98 4.75 -172.81 -0.82 -6.80 16 6 C 0.20 3.07 6.48 -154.63 -1.00 2.07 16 7 C -0.10 -1.45 9.32 -39.03 -0.36 -1.82 16 8 C -0.12 -2.00 8.81 -39.04 -0.34 -2.34 16 9 C 0.33 6.03 5.41 -154.51 -0.84 5.19 16 10 N -0.66 -12.12 2.27 -9.57 -0.02 -12.15 16 11 C 0.34 6.42 4.50 -83.54 -0.38 6.04 16 12 C -0.36 -7.00 7.17 -38.32 -0.27 -7.27 16 13 H 0.13 2.67 7.29 -52.49 -0.38 2.29 16 14 C 0.08 1.46 5.11 -17.21 -0.09 1.37 16 15 N -0.72 -14.03 13.90 55.60 0.77 -13.26 16 16 Si 0.91 16.19 24.46 -169.99 -4.16 12.04 16 17 H -0.24 -4.51 5.87 56.52 0.33 -4.18 16 18 H -0.28 -4.97 7.11 56.52 0.40 -4.57 16 19 H -0.25 -4.33 6.88 56.52 0.39 -3.94 16 20 C -0.29 -5.98 5.88 -104.94 -0.62 -6.60 16 21 C 0.32 7.01 13.95 -22.47 -0.31 6.69 16 22 N -0.52 -11.97 18.54 41.84 0.78 -11.19 16 23 C 0.31 6.54 14.82 -22.47 -0.33 6.20 16 24 N -0.52 -11.85 18.54 41.84 0.78 -11.07 16 25 N -0.28 -5.33 10.97 31.30 0.34 -4.99 16 26 N -0.25 -4.38 9.89 31.28 0.31 -4.08 16 27 C 0.06 0.60 5.38 -3.76 -0.02 0.58 16 28 C 0.06 0.50 6.72 -3.77 -0.03 0.48 16 29 N -0.69 -5.88 6.54 -106.59 -0.70 -6.58 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.09 1.16 7.84 -51.93 -0.41 0.76 16 34 H 0.06 0.80 8.06 -51.93 -0.42 0.38 16 35 H 0.15 1.68 7.26 -52.49 -0.38 1.30 16 36 H 0.17 2.72 6.17 -52.48 -0.32 2.39 16 37 H 0.41 7.27 8.04 -40.82 -0.33 6.94 16 38 H 0.31 5.43 8.29 -40.82 -0.34 5.09 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.09 0.79 6.86 -51.93 -0.36 0.44 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.34 2.24 8.83 -39.29 -0.35 1.90 16 LS Contribution 365.64 15.07 5.51 5.51 Total: -1.00 -25.32 365.64 -6.80 -32.13 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -5.12 Total: 9.20 kcal Atomic # 6 Polarization: 15.70 SS G_CDS: -4.47 Total: 11.23 kcal Atomic # 7 Polarization: -71.55 SS G_CDS: 1.44 Total: -70.11 kcal Atomic # 14 Polarization: 16.19 SS G_CDS: -4.16 Total: 12.04 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -25.32 -6.80 -32.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169079505.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.830 kcal (2) G-P(sol) polarization free energy of solvation -25.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds