Wall clock time and date at job start Sat Apr 11 2020 05:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.50556 * 2 1 4 4 C 1.53052 * 109.48648 * 239.94467 * 2 1 3 5 5 N 1.46965 * 109.36340 * 181.62801 * 4 2 1 6 6 C 1.39301 * 110.99858 * 183.18611 * 5 4 2 7 7 C 1.39586 * 120.07456 * 179.72855 * 6 5 4 8 8 C 1.38361 * 117.96346 * 179.74142 * 7 6 5 9 9 C 1.39574 * 117.96653 * 0.52697 * 8 7 6 10 10 N 1.39459 * 120.07093 * 179.70762 * 9 8 7 11 11 C 1.38328 * 119.99918 * 356.64027 * 10 9 8 12 12 C 1.38991 * 119.99990 * 298.86360 * 11 10 9 13 13 H 1.07998 * 120.00139 * 154.48779 * 12 11 10 14 14 C 1.40837 * 120.00302 * 334.49201 * 12 11 10 15 15 N 1.30333 * 120.00199 * 163.01816 * 14 12 11 16 16 Si 1.86804 * 119.99593 * 343.02041 * 14 12 11 17 17 H 1.48502 * 109.46954 * 88.50585 * 16 14 12 18 18 H 1.48505 * 109.46835 * 208.50232 * 16 14 12 19 19 H 1.48496 * 109.47086 * 328.50265 * 16 14 12 20 20 C 1.41159 * 120.00068 * 118.86660 * 11 10 9 21 21 C 1.43198 * 119.99809 * 184.90981 * 20 11 10 22 22 N 9.17771 * 155.22293 * 172.68356 * 5 1 2 23 23 C 1.43199 * 120.00168 * 4.90859 * 20 11 10 24 24 N 8.56089 * 147.75230 * 145.89061 * 4 1 2 25 25 N 1.32282 * 119.85697 * 359.72632 * 9 8 7 26 26 N 1.28343 * 122.18626 * 0.02562 * 25 9 8 27 27 C 1.46963 * 110.87653 * 59.32329 * 5 4 2 28 28 C 1.53053 * 109.36284 * 300.67919 * 27 5 4 29 29 N 1.46951 * 109.49124 * 120.05526 * 2 1 3 30 30 H 1.09001 * 109.47108 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47111 * 300.05534 * 1 2 3 32 32 H 1.09006 * 109.47211 * 60.05542 * 1 2 3 33 33 H 1.09002 * 109.49196 * 61.66881 * 4 2 1 34 34 H 1.08997 * 109.49141 * 301.59897 * 4 2 1 35 35 H 1.08000 * 121.01383 * 359.97438 * 7 6 5 36 36 H 1.08003 * 121.01373 * 180.26913 * 8 7 6 37 37 H 0.96997 * 120.00076 * 176.63760 * 10 9 8 38 38 H 0.97006 * 119.99921 * 180.02562 * 15 14 12 39 39 H 1.08998 * 109.48460 * 60.64287 * 27 5 4 40 40 H 1.08995 * 109.48402 * 180.71214 * 27 5 4 41 41 H 1.09001 * 109.48415 * 178.37044 * 28 27 5 42 42 H 1.08997 * 109.48960 * 298.43324 * 28 27 5 43 43 H 1.00906 * 111.00380 * 303.15593 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0406 -0.7226 -1.2488 5 7 3.5097 -0.7552 -1.2265 6 6 4.0136 -1.3431 -2.3845 7 6 5.3924 -1.4663 -2.5635 8 6 5.8449 -2.0620 -3.7274 9 6 4.8947 -2.4924 -4.6547 10 7 5.3023 -3.0931 -5.8454 11 6 6.6495 -3.2003 -6.1402 12 6 7.4258 -2.0546 -6.2700 13 1 8.4895 -2.0998 -6.0891 14 6 6.8252 -0.8349 -6.6374 15 7 7.4582 0.2877 -6.4433 16 14 5.1212 -0.8261 -7.4028 17 1 4.0969 -0.7581 -6.3298 18 1 4.9846 0.3546 -8.2931 19 1 4.9276 -2.0678 -8.1940 20 6 7.2360 -4.4731 -6.3092 21 6 8.6491 -4.5894 -6.5099 22 7 9.7701 -4.6817 -6.6691 23 6 6.4179 -5.6480 -6.2800 24 7 5.7688 -6.5800 -6.2569 25 7 3.6066 -2.3289 -4.4018 26 7 3.1865 -1.7807 -3.3200 27 6 4.0000 -1.4491 -0.0274 28 6 3.4893 -0.7265 1.2214 29 7 2.0203 -0.6938 1.1990 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5147 0.8895 32 1 -0.3634 0.5130 -0.8905 33 1 1.7022 -0.1930 -2.1394 34 1 1.6543 -1.7418 -1.2627 35 1 6.0847 -1.1108 -1.8146 36 1 6.9013 -2.1863 -3.9146 37 1 4.6411 -3.4358 -6.4669 38 1 7.0443 1.1279 -6.6960 39 1 3.6359 -2.4765 -0.0274 40 1 5.0899 -1.4491 -0.0275 41 1 3.8278 -1.2562 2.1119 42 1 3.8755 0.2927 1.2353 43 1 1.6553 -0.2681 2.0379 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169079505.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:00 Heat of formation + Delta-G solvation = 126.600861 kcal Electronic energy + Delta-G solvation = -28716.805123 eV Core-core repulsion = 24797.279585 eV Total energy + Delta-G solvation = -3919.525538 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.33883 -40.40387 -39.22938 -37.21153 -36.61421 -36.26216 -35.54107 -33.86693 -33.24435 -32.75156 -30.31279 -29.10408 -28.33386 -26.96564 -25.23320 -24.28151 -23.14624 -22.63805 -20.95855 -20.77459 -19.51828 -19.21908 -18.35257 -17.97411 -17.82082 -17.01616 -16.99617 -16.39943 -16.05705 -15.71066 -15.23140 -15.10206 -14.86799 -14.79043 -14.66503 -14.50673 -14.33762 -14.29960 -13.69201 -13.52786 -13.46551 -13.44973 -13.19078 -12.97503 -12.92739 -12.87264 -12.79547 -12.60939 -12.35758 -12.05948 -12.01120 -11.90914 -11.78757 -11.43795 -11.31793 -10.67926 -10.38204 -9.77686 -9.47849 -9.41029 -8.75562 -7.23183 -0.09771 0.00366 0.40022 1.23282 1.32957 1.39294 1.78384 1.93197 2.02863 2.19560 2.34633 2.45657 2.52995 2.70016 3.19106 3.30527 3.40517 3.60211 3.66813 3.78315 3.82118 3.99821 4.04350 4.20283 4.27881 4.30901 4.36970 4.43985 4.52844 4.65734 4.68872 4.75612 4.85009 4.87567 4.92080 5.00372 5.05444 5.09278 5.31579 5.36376 5.47616 5.68225 5.70510 5.91032 5.99029 6.03675 6.26177 6.48819 6.50579 7.10161 7.28275 7.49233 7.83257 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.014109 B = 0.003360 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.117621 B = 8331.194331 C = 8848.344947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.089 3.911 3 H 0.048 0.952 4 C 0.073 3.927 5 N -0.466 5.466 6 C 0.204 3.796 7 C -0.089 4.089 8 C -0.131 4.131 9 C 0.322 3.678 10 N -0.667 5.667 11 C 0.351 3.649 12 C -0.349 4.349 13 H 0.112 0.888 14 C 0.067 3.933 15 N -0.728 5.728 16 Si 0.944 3.056 17 H -0.254 1.254 18 H -0.276 1.276 19 H -0.245 1.245 20 C -0.299 4.299 21 C 0.329 3.671 22 N -0.547 5.547 23 C 0.315 3.685 24 N -0.548 5.548 25 N -0.306 5.306 26 N -0.273 5.273 27 C 0.053 3.947 28 C 0.065 3.935 29 N -0.695 5.695 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.039 0.961 35 H 0.182 0.818 36 H 0.166 0.834 37 H 0.411 0.589 38 H 0.318 0.682 39 H 0.038 0.962 40 H 0.105 0.895 41 H 0.107 0.893 42 H 0.048 0.952 43 H 0.358 0.642 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.325 10.808 14.851 21.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.021 4.021 3 H 0.066 0.934 4 C -0.054 4.054 5 N -0.186 5.186 6 C -0.039 4.039 7 C -0.119 4.119 8 C -0.163 4.163 9 C 0.080 3.920 10 N -0.300 5.300 11 C 0.247 3.753 12 C -0.376 4.376 13 H 0.129 0.871 14 C -0.166 4.166 15 N -0.346 5.346 16 Si 0.766 3.234 17 H -0.179 1.179 18 H -0.203 1.203 19 H -0.168 1.168 20 C -0.318 4.318 21 C 0.022 3.978 22 N -0.229 5.229 23 C 0.008 3.992 24 N -0.231 5.231 25 N -0.154 5.154 26 N -0.117 5.117 27 C -0.073 4.073 28 C -0.065 4.065 29 N -0.329 5.329 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.057 0.943 35 H 0.199 0.801 36 H 0.183 0.817 37 H 0.250 0.750 38 H 0.131 0.869 39 H 0.057 0.943 40 H 0.123 0.877 41 H 0.125 0.875 42 H 0.066 0.934 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -10.845 9.208 13.963 19.934 hybrid contribution 0.590 0.672 -0.362 0.965 sum -10.255 9.880 13.601 19.692 Atomic orbital electron populations 1.21735 0.92523 1.02580 1.02904 1.21514 0.96220 0.95236 0.89118 0.93364 1.22103 0.84405 1.00226 0.98674 1.59547 1.11114 1.48159 0.99826 1.21504 0.92122 0.95653 0.94639 1.22069 0.94571 0.97100 0.98154 1.22243 1.02317 0.98741 0.92965 1.19821 0.91746 0.92705 0.87696 1.41673 1.06388 1.62727 1.19242 1.16571 0.79396 0.90538 0.88772 1.20078 0.98254 0.91022 1.28287 0.87070 1.26943 1.02547 0.93869 0.93264 1.69366 1.39344 1.00786 1.25065 0.85683 0.77348 0.80133 0.80203 1.17887 1.20293 1.16807 1.12724 0.83382 0.86582 1.49110 1.24726 0.91383 0.91623 0.90077 1.81082 1.12940 1.09214 1.19713 1.25213 0.92152 0.91765 0.90072 1.81095 1.10912 1.11080 1.19980 1.72622 1.12596 1.16329 1.13804 1.72801 1.31197 1.09147 0.98575 1.22532 1.01500 0.95746 0.87539 1.22004 0.87625 0.99907 0.96916 1.60521 1.08632 1.58619 1.05163 0.92498 0.90617 0.91636 0.90732 0.94258 0.80070 0.81671 0.75001 0.86944 0.94331 0.87722 0.87520 0.93351 0.82201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.46 71.98 0.68 -1.24 16 2 C 0.09 1.51 3.19 44.92 0.14 1.65 16 3 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 4 C 0.07 1.74 4.08 86.31 0.35 2.09 16 5 N -0.47 -11.20 4.75 -700.65 -3.33 -14.52 16 6 C 0.20 6.03 6.48 133.10 0.86 6.90 16 7 C -0.09 -2.40 9.32 22.62 0.21 -2.19 16 8 C -0.13 -4.17 8.81 22.62 0.20 -3.97 16 9 C 0.32 11.51 5.41 133.05 0.72 12.22 16 10 N -0.67 -24.13 2.27 -184.20 -0.42 -24.55 16 11 C 0.35 13.22 4.50 39.02 0.18 13.39 16 12 C -0.35 -13.46 7.17 23.09 0.17 -13.30 16 13 H 0.11 4.67 7.29 -2.91 -0.02 4.64 16 14 C 0.07 2.47 5.11 85.55 0.44 2.91 16 15 N -0.73 -27.39 13.90 21.98 0.31 -27.08 16 16 Si 0.94 32.29 24.46 68.60 1.68 33.97 16 17 H -0.25 -9.26 5.87 99.48 0.58 -8.68 16 18 H -0.28 -9.21 7.11 99.48 0.71 -8.50 16 19 H -0.24 -8.29 6.88 99.48 0.68 -7.60 16 20 C -0.30 -12.14 5.88 -20.07 -0.12 -12.26 16 21 C 0.33 14.26 13.95 88.33 1.23 15.50 16 22 N -0.55 -25.02 18.54 19.00 0.35 -24.67 16 23 C 0.31 13.44 14.82 88.33 1.31 14.75 16 24 N -0.55 -24.74 18.54 19.00 0.35 -24.38 16 25 N -0.31 -11.53 10.97 -54.89 -0.60 -12.13 16 26 N -0.27 -9.61 9.89 -54.96 -0.54 -10.15 16 27 C 0.05 0.99 5.38 86.31 0.46 1.45 16 28 C 0.06 0.87 6.72 86.31 0.58 1.45 16 29 N -0.70 -10.15 6.54 -491.15 -3.21 -13.36 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.07 1.95 7.84 -2.39 -0.02 1.94 16 34 H 0.04 1.08 8.06 -2.39 -0.02 1.06 16 35 H 0.18 3.54 7.26 -2.91 -0.02 3.52 16 36 H 0.17 5.26 6.17 -2.91 -0.02 5.24 16 37 H 0.41 14.54 8.04 -92.71 -0.75 13.80 16 38 H 0.32 10.70 8.29 -92.70 -0.77 9.93 16 39 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.10 1.57 6.86 -2.39 -0.02 1.55 16 41 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.36 3.59 8.83 -89.69 -0.79 2.80 16 Total: -1.00 -53.52 365.64 1.42 -52.11 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: -0.58 Total: 25.42 kcal Atomic # 6 Polarization: 31.94 SS G_CDS: 7.41 Total: 39.36 kcal Atomic # 7 Polarization: -143.76 SS G_CDS: -7.09 Total: -150.85 kcal Atomic # 14 Polarization: 32.29 SS G_CDS: 1.68 Total: 33.97 kcal Total: -53.52 1.42 -52.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169079505.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.709 kcal (2) G-P(sol) polarization free energy of solvation -53.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds