Wall clock time and date at job start Sat Apr 11 2020 05:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46899 * 111.00102 * 2 1 4 4 C 1.50706 * 109.47381 * 293.96020 * 3 2 1 5 5 O 1.21296 * 119.99474 * 359.97438 * 4 3 2 6 6 N 1.34776 * 120.00090 * 180.02562 * 4 3 2 7 7 C 1.37094 * 120.00056 * 180.02562 * 6 4 3 8 8 H 1.08003 * 120.00037 * 359.97438 * 7 6 4 9 9 C 1.38947 * 120.00167 * 179.97438 * 7 6 4 10 10 N 1.31410 * 119.99831 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00018 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47327 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.47435 * 120.00095 * 11 9 7 14 14 H 1.48504 * 109.46975 * 239.99852 * 11 9 7 15 15 C 1.46900 * 111.00079 * 123.95753 * 2 1 3 16 16 H 1.08993 * 110.88501 * 295.34114 * 15 2 1 17 17 C 1.55154 * 111.00136 * 59.22625 * 15 2 1 18 18 C 1.54326 * 102.94001 * 153.57836 * 17 15 2 19 19 N 1.47025 * 107.27082 * 337.80111 * 18 17 15 20 20 C 1.34777 * 125.64655 * 179.00187 * 19 18 17 21 21 O 1.21734 * 119.99797 * 174.93721 * 20 19 18 22 22 C 1.46375 * 120.00171 * 354.93040 * 20 19 18 23 23 C 1.33978 * 119.23283 * 185.37805 * 22 20 19 24 24 O 1.34993 * 121.69005 * 180.12484 * 23 22 20 25 25 C 1.43251 * 116.82997 * 343.31047 * 24 23 22 26 26 C 1.53553 * 108.08632 * 45.25493 * 25 24 23 27 27 O 1.36217 * 119.23034 * 5.64389 * 22 20 19 28 28 C 1.47464 * 108.72080 * 358.97911 * 19 18 17 29 29 H 1.08993 * 109.47138 * 59.99555 * 1 2 3 30 30 H 1.08993 * 109.47027 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46552 * 299.99953 * 1 2 3 32 32 H 1.08998 * 109.47009 * 53.95834 * 3 2 1 33 33 H 1.09001 * 109.47283 * 173.95874 * 3 2 1 34 34 H 0.97003 * 119.99496 * 359.97438 * 6 4 3 35 35 H 0.96997 * 120.00063 * 180.02562 * 10 9 7 36 36 H 1.09007 * 110.71726 * 271.93257 * 17 15 2 37 37 H 1.09001 * 110.72619 * 35.21133 * 17 15 2 38 38 H 1.08999 * 109.88916 * 97.22186 * 18 17 15 39 39 H 1.09007 * 109.88164 * 218.23018 * 18 17 15 40 40 H 1.08003 * 119.15405 * 0.38927 * 23 22 20 41 41 H 1.08995 * 109.73864 * 285.61083 * 25 24 23 42 42 H 1.09000 * 109.74004 * 164.90087 * 25 24 23 43 43 H 1.08991 * 109.75421 * 182.21849 * 26 25 24 44 44 H 1.08999 * 109.75419 * 61.47039 * 26 25 24 45 45 H 1.09006 * 110.34884 * 265.25079 * 28 19 18 46 46 H 1.09001 * 110.40314 * 142.91704 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 -1.2984 5 8 1.0053 1.4454 -2.1411 6 7 2.0189 3.3200 -1.5236 7 6 1.6922 3.9349 -2.7046 8 1 1.1291 3.3994 -3.4546 9 6 2.0855 5.2472 -2.9366 10 7 2.7702 5.8990 -2.0238 11 14 1.6410 6.0848 -4.5459 12 1 0.8737 5.1422 -5.3992 13 1 0.8138 7.2861 -4.2668 14 1 2.8827 6.4919 -5.2515 15 6 1.9955 -0.7660 1.1375 16 1 1.7279 -0.2925 2.0820 17 6 1.5029 -2.2366 1.0933 18 6 2.6113 -2.9954 1.8532 19 7 3.8244 -2.1666 1.7978 20 6 5.0100 -2.4709 2.3619 21 8 5.9752 -1.7531 2.1747 22 6 5.1370 -3.6643 3.1999 23 6 6.2910 -3.8942 3.8405 24 8 6.4632 -4.9801 4.6238 25 6 5.2796 -5.6721 5.0389 26 6 4.3642 -5.8271 3.8158 27 8 4.0810 -4.5182 3.3057 28 6 3.5296 -0.9474 1.0224 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.5612 1.9273 0.8309 33 1 3.0798 1.3444 0.1082 34 1 2.5243 3.8011 -0.8498 35 1 3.0445 6.8152 -2.1856 36 1 0.5457 -2.3383 1.6048 37 1 1.4307 -2.5885 0.0641 38 1 2.3128 -3.1467 2.8905 39 1 2.7952 -3.9582 1.3764 40 1 7.1029 -3.1905 3.7309 41 1 4.7684 -5.0967 5.8107 42 1 5.5451 -6.6555 5.4270 43 1 3.4360 -6.3166 4.1101 44 1 4.8677 -6.4192 3.0516 45 1 3.8186 -1.0820 -0.0200 46 1 4.0464 -0.0894 1.4524 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188717853.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:22 Heat of formation + Delta-G solvation = -100.511439 kcal Electronic energy + Delta-G solvation = -29633.069877 eV Core-core repulsion = 25331.801589 eV Total energy + Delta-G solvation = -4301.268289 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.47590 -40.03432 -38.69840 -37.64668 -37.42302 -35.42516 -33.80142 -32.38991 -31.25749 -30.90178 -29.30139 -28.94308 -27.81678 -25.87485 -24.89615 -24.05626 -22.94146 -21.22240 -20.23275 -19.64283 -19.11824 -18.78481 -17.94135 -17.77760 -16.82394 -16.64350 -16.27006 -15.81469 -15.37888 -15.01607 -14.94032 -14.72533 -14.58592 -14.46859 -14.29435 -13.98561 -13.80098 -13.61821 -13.34150 -13.02723 -12.94700 -12.64252 -12.46019 -12.07311 -11.76104 -11.50043 -11.47337 -11.32102 -11.26079 -11.12060 -10.98664 -10.92573 -10.73704 -10.32183 -10.21870 -10.19873 -9.46451 -8.89857 -8.46701 -8.44272 -7.96859 -7.86722 -6.39136 -3.79880 1.05269 2.54957 2.63565 2.97718 3.08485 3.18257 3.28774 3.35833 3.84117 3.92082 3.97634 4.23107 4.26128 4.35589 4.49040 4.59258 4.64157 4.77877 4.86289 4.96757 5.01354 5.10869 5.21389 5.23985 5.31442 5.52081 5.61255 5.62856 5.70602 5.73722 5.83031 5.92387 5.93675 5.94834 6.07872 6.14040 6.30157 6.30613 6.54919 6.94368 7.21499 7.31908 7.38610 7.57946 7.92262 8.09024 8.64287 9.20719 9.57160 10.08754 10.78678 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024673 B = 0.002079 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.586837 B =13462.203369 C =14320.945720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.507 5.507 3 C 0.042 3.958 4 C 0.445 3.555 5 O -0.578 6.578 6 N -0.564 5.564 7 C -0.297 4.297 8 H 0.104 0.896 9 C 0.021 3.979 10 N -0.901 5.901 11 Si 0.929 3.071 12 H -0.268 1.268 13 H -0.282 1.282 14 H -0.282 1.282 15 C 0.069 3.931 16 H 0.055 0.945 17 C -0.125 4.125 18 C 0.115 3.885 19 N -0.605 5.605 20 C 0.598 3.402 21 O -0.535 6.535 22 C -0.089 4.089 23 C 0.040 3.960 24 O -0.300 6.300 25 C 0.013 3.987 26 C 0.017 3.983 27 O -0.300 6.300 28 C 0.114 3.886 29 H 0.099 0.901 30 H 0.061 0.939 31 H 0.015 0.985 32 H 0.049 0.951 33 H 0.089 0.911 34 H 0.392 0.608 35 H 0.271 0.729 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.192 0.808 41 H 0.081 0.919 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.077 0.923 45 H 0.086 0.914 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.627 -23.120 16.913 28.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.231 5.231 3 C -0.089 4.089 4 C 0.231 3.769 5 O -0.462 6.462 6 N -0.201 5.201 7 C -0.427 4.427 8 H 0.122 0.878 9 C -0.180 4.180 10 N -0.543 5.543 11 Si 0.757 3.243 12 H -0.192 1.192 13 H -0.208 1.208 14 H -0.208 1.208 15 C -0.041 4.041 16 H 0.073 0.927 17 C -0.163 4.163 18 C -0.008 4.008 19 N -0.337 5.337 20 C 0.387 3.613 21 O -0.415 6.415 22 C -0.136 4.136 23 C -0.026 4.026 24 O -0.212 6.212 25 C -0.063 4.063 26 C -0.059 4.059 27 O -0.216 6.216 28 C -0.009 4.009 29 H 0.117 0.883 30 H 0.080 0.920 31 H 0.033 0.967 32 H 0.067 0.933 33 H 0.107 0.893 34 H 0.225 0.775 35 H 0.081 0.919 36 H 0.099 0.901 37 H 0.109 0.891 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.209 0.791 41 H 0.099 0.901 42 H 0.138 0.862 43 H 0.138 0.862 44 H 0.095 0.905 45 H 0.104 0.896 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.968 -23.247 15.852 28.206 hybrid contribution -0.230 1.013 0.552 1.177 sum 1.737 -22.234 16.405 27.685 Atomic orbital electron populations 1.22546 0.86178 1.01607 1.02119 1.61611 1.08896 1.12872 1.39720 1.21937 1.00861 0.88771 0.97362 1.19680 0.85468 0.82934 0.88862 1.90480 1.43996 1.64618 1.47097 1.41873 1.49349 1.10776 1.18079 1.19740 1.32805 0.95407 0.94752 0.87841 1.25268 0.96859 0.96697 0.99221 1.69621 1.38072 1.12189 1.34377 0.85802 0.78195 0.78991 0.81361 1.19227 1.20825 1.20763 1.22778 0.93859 0.94428 0.93043 0.92702 1.22766 0.97544 0.93926 1.02083 1.22034 0.83652 0.94147 1.00996 1.48172 1.10710 1.22357 1.52508 1.16719 0.81996 0.83627 0.78937 1.90900 1.36905 1.51247 1.62442 1.20479 0.91000 0.96013 1.06154 1.23182 0.98466 0.90014 0.90974 1.86144 1.32664 1.39055 1.63380 1.23731 0.86557 0.99167 0.96828 1.23621 1.02052 0.84080 0.96102 1.86474 1.30740 1.22682 1.81693 1.22313 0.94767 0.86765 0.97033 0.88307 0.91978 0.96672 0.93313 0.89287 0.77479 0.91934 0.90093 0.89111 0.90795 0.90879 0.79124 0.90076 0.86173 0.86154 0.90509 0.89595 0.90203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.02 60.07 0.54 0.90 16 2 N -0.51 -8.17 4.40 -233.75 -1.03 -9.20 16 3 C 0.04 0.75 5.34 -4.97 -0.03 0.72 16 4 C 0.45 10.46 7.51 -10.98 -0.08 10.38 16 5 O -0.58 -15.35 13.89 5.54 0.08 -15.27 16 6 N -0.56 -14.36 5.29 -10.96 -0.06 -14.42 16 7 C -0.30 -8.31 9.68 -14.94 -0.14 -8.46 16 8 H 0.10 3.03 7.16 -52.48 -0.38 2.65 16 9 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 10 N -0.90 -24.76 13.05 55.50 0.72 -24.03 16 11 Si 0.93 21.20 29.55 -169.99 -5.02 16.18 16 12 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 13 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 14 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 15 C 0.07 0.88 2.71 -65.57 -0.18 0.70 16 16 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 17 C -0.13 -1.27 5.21 -24.90 -0.13 -1.40 16 18 C 0.11 1.13 5.41 -3.06 -0.02 1.11 16 19 N -0.60 -7.66 3.33 -172.13 -0.57 -8.23 16 20 C 0.60 8.16 7.75 -12.99 -0.10 8.06 16 21 O -0.54 -8.87 16.43 5.16 0.08 -8.79 16 22 C -0.09 -0.96 6.56 -37.81 -0.25 -1.21 16 23 C 0.04 0.39 10.60 29.23 0.31 0.70 16 24 O -0.30 -2.53 10.47 -30.80 -0.32 -2.85 16 25 C 0.01 0.06 7.30 37.44 0.27 0.33 16 26 C 0.02 0.09 7.31 37.44 0.27 0.36 16 27 O -0.30 -2.64 7.10 -34.54 -0.25 -2.89 16 28 C 0.11 1.56 5.45 -2.51 -0.01 1.54 16 29 H 0.10 1.88 5.88 -51.93 -0.31 1.58 16 30 H 0.06 0.80 6.91 -51.93 -0.36 0.44 16 31 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.05 0.80 8.12 -51.93 -0.42 0.38 16 33 H 0.09 1.49 6.81 -51.93 -0.35 1.13 16 34 H 0.39 9.61 7.90 -40.82 -0.32 9.29 16 35 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 36 H 0.08 0.68 8.01 -51.93 -0.42 0.26 16 37 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.07 0.67 7.30 -51.93 -0.38 0.29 16 39 H 0.07 0.68 7.67 -51.92 -0.40 0.28 16 40 H 0.19 1.81 7.39 -52.48 -0.39 1.42 16 41 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.12 0.26 8.14 -51.93 -0.42 -0.17 16 43 H 0.12 0.28 8.14 -51.93 -0.42 -0.15 16 44 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 46 H 0.08 1.14 7.74 -51.93 -0.40 0.73 16 LS Contribution 374.50 15.07 5.64 5.64 Total: -1.00 -33.97 374.50 -7.00 -40.97 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -6.64 Total: 8.67 kcal Atomic # 6 Polarization: 13.86 SS G_CDS: 0.36 Total: 14.22 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: -0.93 Total: -55.88 kcal Atomic # 8 Polarization: -29.39 SS G_CDS: -0.41 Total: -29.80 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.97 -7.00 -40.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188717853.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.543 kcal (2) G-P(sol) polarization free energy of solvation -33.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds