Wall clock time and date at job start Sat Apr 11 2020 05:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46899 * 111.00102 * 2 1 4 4 C 1.50706 * 109.47381 * 293.96020 * 3 2 1 5 5 O 1.21296 * 119.99474 * 359.97438 * 4 3 2 6 6 N 1.34776 * 120.00090 * 180.02562 * 4 3 2 7 7 C 1.37094 * 120.00056 * 180.02562 * 6 4 3 8 8 H 1.08003 * 120.00037 * 359.97438 * 7 6 4 9 9 C 1.38947 * 120.00167 * 179.97438 * 7 6 4 10 10 N 1.31410 * 119.99831 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00018 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47327 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.47435 * 120.00095 * 11 9 7 14 14 H 1.48504 * 109.46975 * 239.99852 * 11 9 7 15 15 C 1.46900 * 111.00079 * 123.95753 * 2 1 3 16 16 H 1.08993 * 110.88501 * 295.34114 * 15 2 1 17 17 C 1.55154 * 111.00136 * 59.22625 * 15 2 1 18 18 C 1.54326 * 102.94001 * 153.57836 * 17 15 2 19 19 N 1.47025 * 107.27082 * 337.80111 * 18 17 15 20 20 C 1.34777 * 125.64655 * 179.00187 * 19 18 17 21 21 O 1.21734 * 119.99797 * 174.93721 * 20 19 18 22 22 C 1.46375 * 120.00171 * 354.93040 * 20 19 18 23 23 C 1.33978 * 119.23283 * 185.37805 * 22 20 19 24 24 O 1.34993 * 121.69005 * 180.12484 * 23 22 20 25 25 C 1.43251 * 116.82997 * 343.31047 * 24 23 22 26 26 C 1.53553 * 108.08632 * 45.25493 * 25 24 23 27 27 O 1.36217 * 119.23034 * 5.64389 * 22 20 19 28 28 C 1.47464 * 108.72080 * 358.97911 * 19 18 17 29 29 H 1.08993 * 109.47138 * 59.99555 * 1 2 3 30 30 H 1.08993 * 109.47027 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46552 * 299.99953 * 1 2 3 32 32 H 1.08998 * 109.47009 * 53.95834 * 3 2 1 33 33 H 1.09001 * 109.47283 * 173.95874 * 3 2 1 34 34 H 0.97003 * 119.99496 * 359.97438 * 6 4 3 35 35 H 0.96997 * 120.00063 * 180.02562 * 10 9 7 36 36 H 1.09007 * 110.71726 * 271.93257 * 17 15 2 37 37 H 1.09001 * 110.72619 * 35.21133 * 17 15 2 38 38 H 1.08999 * 109.88916 * 97.22186 * 18 17 15 39 39 H 1.09007 * 109.88164 * 218.23018 * 18 17 15 40 40 H 1.08003 * 119.15405 * 0.38927 * 23 22 20 41 41 H 1.08995 * 109.73864 * 285.61083 * 25 24 23 42 42 H 1.09000 * 109.74004 * 164.90087 * 25 24 23 43 43 H 1.08991 * 109.75421 * 182.21849 * 26 25 24 44 44 H 1.08999 * 109.75419 * 61.47039 * 26 25 24 45 45 H 1.09006 * 110.34884 * 265.25079 * 28 19 18 46 46 H 1.09001 * 110.40314 * 142.91704 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 -1.2984 5 8 1.0053 1.4454 -2.1411 6 7 2.0189 3.3200 -1.5236 7 6 1.6922 3.9349 -2.7046 8 1 1.1291 3.3994 -3.4546 9 6 2.0855 5.2472 -2.9366 10 7 2.7702 5.8990 -2.0238 11 14 1.6410 6.0848 -4.5459 12 1 0.8737 5.1422 -5.3992 13 1 0.8138 7.2861 -4.2668 14 1 2.8827 6.4919 -5.2515 15 6 1.9955 -0.7660 1.1375 16 1 1.7279 -0.2925 2.0820 17 6 1.5029 -2.2366 1.0933 18 6 2.6113 -2.9954 1.8532 19 7 3.8244 -2.1666 1.7978 20 6 5.0100 -2.4709 2.3619 21 8 5.9752 -1.7531 2.1747 22 6 5.1370 -3.6643 3.1999 23 6 6.2910 -3.8942 3.8405 24 8 6.4632 -4.9801 4.6238 25 6 5.2796 -5.6721 5.0389 26 6 4.3642 -5.8271 3.8158 27 8 4.0810 -4.5182 3.3057 28 6 3.5296 -0.9474 1.0224 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.5612 1.9273 0.8309 33 1 3.0798 1.3444 0.1082 34 1 2.5243 3.8011 -0.8498 35 1 3.0445 6.8152 -2.1856 36 1 0.5457 -2.3383 1.6048 37 1 1.4307 -2.5885 0.0641 38 1 2.3128 -3.1467 2.8905 39 1 2.7952 -3.9582 1.3764 40 1 7.1029 -3.1905 3.7309 41 1 4.7684 -5.0967 5.8107 42 1 5.5451 -6.6555 5.4270 43 1 3.4360 -6.3166 4.1101 44 1 4.8677 -6.4192 3.0516 45 1 3.8186 -1.0820 -0.0200 46 1 4.0464 -0.0894 1.4524 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188717853.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:21 Heat of formation + Delta-G solvation = -126.847789 kcal Electronic energy + Delta-G solvation = -29634.211907 eV Core-core repulsion = 25331.801589 eV Total energy + Delta-G solvation = -4302.410319 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.15552 -41.02600 -40.24964 -38.98477 -38.05940 -36.73332 -35.76883 -33.27892 -33.04182 -31.92409 -30.16042 -29.69609 -29.29543 -26.81885 -26.48251 -25.10810 -24.07515 -22.01438 -21.41499 -20.86347 -20.28322 -19.84645 -19.50239 -18.68346 -17.95552 -17.51156 -17.30586 -17.11920 -16.57227 -16.29863 -16.11480 -15.79644 -15.68803 -15.54057 -15.39527 -15.15018 -15.02930 -14.65604 -14.59443 -14.24907 -13.91578 -13.82277 -13.59269 -13.39293 -13.09114 -13.06827 -12.77591 -12.56413 -12.41061 -12.32759 -12.11258 -11.94888 -11.88728 -11.81926 -11.66917 -11.45527 -11.15561 -10.27853 -9.99401 -9.87064 -9.25208 -9.18903 -8.45661 -5.94238 0.23205 1.36814 1.41755 1.56155 1.69463 1.89989 2.05899 2.25104 2.27331 2.34067 2.78503 3.20942 3.29948 3.45493 3.45606 3.67351 3.79954 4.02815 4.05093 4.05464 4.17809 4.26535 4.30750 4.33319 4.40563 4.49889 4.51389 4.60305 4.62381 4.68603 4.73681 4.83931 4.88191 4.90991 4.99788 5.15480 5.20090 5.29623 5.42423 5.72273 5.85502 6.04912 6.18803 6.22511 6.46573 6.61281 6.93200 7.13969 7.57362 8.12838 8.72112 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024673 B = 0.002079 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.586837 B =13462.203369 C =14320.945720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.524 5.524 3 C 0.055 3.945 4 C 0.444 3.556 5 O -0.611 6.611 6 N -0.576 5.576 7 C -0.329 4.329 8 H 0.081 0.919 9 C -0.016 4.016 10 N -0.922 5.922 11 Si 0.994 3.006 12 H -0.272 1.272 13 H -0.270 1.270 14 H -0.273 1.273 15 C 0.074 3.926 16 H 0.070 0.930 17 C -0.116 4.116 18 C 0.119 3.881 19 N -0.606 5.606 20 C 0.589 3.411 21 O -0.578 6.578 22 C -0.098 4.098 23 C 0.053 3.947 24 O -0.309 6.309 25 C 0.006 3.994 26 C 0.013 3.987 27 O -0.308 6.308 28 C 0.113 3.887 29 H 0.057 0.943 30 H 0.090 0.910 31 H 0.031 0.969 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.395 0.605 35 H 0.277 0.723 36 H 0.109 0.891 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.186 0.814 41 H 0.088 0.912 42 H 0.152 0.848 43 H 0.154 0.846 44 H 0.077 0.923 45 H 0.064 0.936 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.736 -24.984 18.620 31.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.249 5.249 3 C -0.077 4.077 4 C 0.231 3.769 5 O -0.497 6.497 6 N -0.214 5.214 7 C -0.459 4.459 8 H 0.099 0.901 9 C -0.216 4.216 10 N -0.563 5.563 11 Si 0.818 3.182 12 H -0.196 1.196 13 H -0.196 1.196 14 H -0.198 1.198 15 C -0.035 4.035 16 H 0.087 0.913 17 C -0.154 4.154 18 C -0.003 4.003 19 N -0.338 5.338 20 C 0.381 3.619 21 O -0.461 6.461 22 C -0.146 4.146 23 C -0.015 4.015 24 O -0.221 6.221 25 C -0.068 4.068 26 C -0.062 4.062 27 O -0.224 6.224 28 C -0.010 4.010 29 H 0.076 0.924 30 H 0.109 0.891 31 H 0.049 0.951 32 H 0.087 0.913 33 H 0.117 0.883 34 H 0.228 0.772 35 H 0.086 0.914 36 H 0.128 0.872 37 H 0.101 0.899 38 H 0.109 0.891 39 H 0.099 0.901 40 H 0.203 0.797 41 H 0.106 0.894 42 H 0.170 0.830 43 H 0.172 0.828 44 H 0.096 0.904 45 H 0.082 0.918 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.055 -25.148 17.593 30.709 hybrid contribution 0.054 1.436 0.093 1.440 sum 1.110 -23.712 17.686 29.602 Atomic orbital electron populations 1.22441 0.85661 1.03049 1.00766 1.61530 1.09495 1.11803 1.42052 1.21769 1.01677 0.89854 0.94360 1.20669 0.83722 0.82187 0.90301 1.90459 1.45069 1.65233 1.48894 1.41957 1.50055 1.11653 1.17693 1.19698 1.34191 0.96331 0.95658 0.90138 1.26066 0.96349 0.96725 1.02437 1.69687 1.38266 1.12636 1.35757 0.84855 0.78188 0.77896 0.77297 1.19648 1.19572 1.19820 1.22777 0.92850 0.95653 0.92178 0.91258 1.22776 0.98883 0.91557 1.02145 1.22161 0.82191 0.93854 1.02057 1.48269 1.11429 1.22238 1.51846 1.17184 0.81615 0.84204 0.78934 1.90862 1.38255 1.52947 1.64066 1.20015 0.92000 0.95972 1.06637 1.23139 0.97850 0.90082 0.90385 1.86136 1.34780 1.38457 1.62761 1.24099 0.85499 1.00351 0.96869 1.23958 1.03896 0.82395 0.95975 1.86421 1.29960 1.23856 1.82132 1.22180 0.95665 0.87200 0.95939 0.92445 0.89149 0.95088 0.91290 0.88262 0.77172 0.91382 0.87240 0.89948 0.89086 0.90059 0.79740 0.89426 0.83022 0.82799 0.90440 0.91772 0.91317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 9.02 127.69 1.15 1.99 16 2 N -0.52 -16.46 4.40 -893.45 -3.93 -20.39 16 3 C 0.05 1.94 5.34 85.56 0.46 2.40 16 4 C 0.44 21.41 7.51 87.66 0.66 22.07 16 5 O -0.61 -33.57 13.89 -3.08 -0.04 -33.62 16 6 N -0.58 -30.21 5.29 -306.98 -1.62 -31.83 16 7 C -0.33 -18.96 9.68 84.04 0.81 -18.15 16 8 H 0.08 4.92 7.16 -2.91 -0.02 4.90 16 9 C -0.02 -0.89 5.50 84.93 0.47 -0.43 16 10 N -0.92 -50.89 13.05 21.66 0.28 -50.60 16 11 Si 0.99 43.72 29.55 68.60 2.03 45.75 16 12 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 13 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 14 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 15 C 0.07 1.77 2.71 46.31 0.13 1.89 16 16 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 17 C -0.12 -2.03 5.21 31.78 0.17 -1.87 16 18 C 0.12 2.06 5.41 86.73 0.47 2.53 16 19 N -0.61 -14.94 3.33 -816.68 -2.72 -17.66 16 20 C 0.59 16.15 7.75 86.36 0.67 16.81 16 21 O -0.58 -19.93 16.43 -4.46 -0.07 -20.00 16 22 C -0.10 -2.04 6.56 23.42 0.15 -1.88 16 23 C 0.05 1.00 10.60 66.85 0.71 1.71 16 24 O -0.31 -4.67 10.47 -69.15 -0.72 -5.39 16 25 C 0.01 0.04 7.30 72.17 0.53 0.57 16 26 C 0.01 0.09 7.31 72.17 0.53 0.62 16 27 O -0.31 -4.68 7.10 -82.53 -0.59 -5.26 16 28 C 0.11 3.10 5.45 86.85 0.47 3.58 16 29 H 0.06 2.21 5.88 -2.39 -0.01 2.19 16 30 H 0.09 2.11 6.91 -2.39 -0.02 2.09 16 31 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.07 2.19 8.12 -2.39 -0.02 2.17 16 33 H 0.10 3.34 6.81 -2.39 -0.02 3.32 16 34 H 0.39 19.86 7.90 -92.71 -0.73 19.13 16 35 H 0.28 14.27 8.31 -92.71 -0.77 13.50 16 36 H 0.11 1.35 8.01 -2.38 -0.02 1.33 16 37 H 0.08 1.63 8.14 -2.39 -0.02 1.62 16 38 H 0.09 1.32 7.30 -2.39 -0.02 1.30 16 39 H 0.08 1.31 7.67 -2.38 -0.02 1.29 16 40 H 0.19 3.60 7.39 -2.91 -0.02 3.58 16 41 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.15 0.05 8.14 -2.39 -0.02 0.03 16 43 H 0.15 0.03 8.14 -2.39 -0.02 0.01 16 44 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 46 H 0.07 2.00 7.74 -2.39 -0.02 1.99 16 Total: -1.00 -76.46 374.50 0.26 -76.20 By element: Atomic # 1 Polarization: 30.68 SS G_CDS: 0.28 Total: 30.97 kcal Atomic # 6 Polarization: 24.48 SS G_CDS: 7.37 Total: 31.84 kcal Atomic # 7 Polarization: -112.49 SS G_CDS: -7.99 Total: -120.48 kcal Atomic # 8 Polarization: -62.85 SS G_CDS: -1.43 Total: -64.27 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -76.46 0.26 -76.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188717853.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.650 kcal (2) G-P(sol) polarization free energy of solvation -76.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds