Wall clock time and date at job start Sat Apr 11 2020 05:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 O 1.42899 * 109.47394 * 313.59182 * 3 2 1 5 5 C 1.42900 * 113.99738 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.46885 * 29.99964 * 5 4 3 7 7 C 1.52998 * 109.47299 * 269.99999 * 5 4 3 8 8 C 1.50697 * 109.46752 * 150.00144 * 5 4 3 9 9 O 1.21283 * 120.00274 * 4.99800 * 8 5 4 10 10 N 1.34780 * 120.00091 * 185.00080 * 8 5 4 11 11 C 1.46495 * 120.00343 * 179.97438 * 10 8 5 12 12 H 1.09001 * 110.28528 * 34.30056 * 11 10 8 13 13 C 1.54374 * 110.41379 * 272.11498 * 11 10 8 14 14 N 1.48555 * 104.59646 * 217.20522 * 13 11 10 15 15 C 1.46904 * 110.99825 * 159.03543 * 14 13 11 16 16 C 1.50703 * 109.46986 * 61.07751 * 15 14 13 17 17 O 1.21287 * 119.99865 * 6.05954 * 16 15 14 18 18 N 1.34773 * 119.99986 * 186.05593 * 16 15 14 19 19 C 1.37092 * 120.00186 * 179.97438 * 18 16 15 20 20 H 1.08004 * 119.99675 * 0.02562 * 19 18 16 21 21 C 1.38954 * 120.00244 * 179.97438 * 19 18 16 22 22 N 1.31409 * 119.99980 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00095 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47021 * 60.00364 * 23 21 19 25 25 H 1.48494 * 109.47154 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47016 * 300.00640 * 23 21 19 27 27 C 1.48565 * 104.22430 * 39.48442 * 14 13 11 28 28 C 1.54262 * 110.32442 * 156.42174 * 11 10 8 29 29 H 1.09000 * 110.32153 * 0.02562 * 28 11 10 30 30 O 1.42898 * 110.32737 * 237.89359 * 28 11 10 31 31 H 4.38454 * 5.44365 * 179.97438 * 4 1 2 32 32 H 1.08996 * 109.46499 * 193.58868 * 3 2 1 33 33 H 1.09005 * 109.46836 * 73.59326 * 3 2 1 34 34 H 1.08998 * 109.47337 * 59.99959 * 7 5 4 35 35 H 1.08997 * 109.47235 * 180.02562 * 7 5 4 36 36 H 1.09009 * 109.47007 * 300.00598 * 7 5 4 37 37 H 0.97005 * 119.99568 * 359.97438 * 10 8 5 38 38 H 1.09004 * 110.41010 * 335.98680 * 13 11 10 39 39 H 1.09000 * 110.41123 * 98.42513 * 13 11 10 40 40 H 1.09003 * 109.47034 * 181.07201 * 15 14 13 41 41 H 1.08993 * 109.47290 * 301.07312 * 15 14 13 42 42 H 0.97001 * 119.99921 * 359.97438 * 18 16 15 43 43 H 0.97000 * 120.00235 * 179.97438 * 22 21 19 44 44 H 1.08999 * 110.41354 * 201.74305 * 27 14 13 45 45 H 1.09001 * 110.51210 * 79.33794 * 27 14 13 46 46 H 0.96700 * 114.00172 * 179.97438 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1228 -0.9281 0.9758 5 6 4.5474 -1.0047 1.0578 6 1 4.9791 -0.0402 0.7905 7 6 5.0570 -2.0767 0.0923 8 6 4.9509 -1.3632 2.4648 9 8 4.1024 -1.6248 3.2910 10 7 6.2547 -1.3931 2.8051 11 6 6.6470 -1.7411 4.1730 12 1 5.9614 -2.4810 4.5861 13 6 6.6742 -0.4798 5.0627 14 7 7.8350 -0.6844 5.9668 15 6 8.3016 0.5931 6.5219 16 6 7.1952 1.2249 7.3270 17 8 6.1632 0.6178 7.5203 18 7 7.3527 2.4644 7.8322 19 6 6.3462 3.0393 8.5641 20 1 5.4271 2.4988 8.7362 21 6 6.5087 4.3170 9.0855 22 7 7.6272 4.9745 8.8765 23 14 5.1374 5.1001 10.0833 24 1 4.8504 4.2607 11.2742 25 1 5.5563 6.4555 10.5220 26 1 3.9152 5.2068 9.2466 27 6 8.8719 -1.2970 5.0968 28 6 8.0926 -2.2788 4.1954 29 1 8.5105 -2.2835 3.1887 30 8 8.1242 -3.5948 4.7515 31 1 -1.0499 0.0000 0.0003 32 1 3.0088 0.9997 0.2415 33 1 3.0095 -0.2895 -0.9859 34 1 4.7651 -1.8174 -0.9254 35 1 6.1435 -2.1354 0.1552 36 1 4.6251 -3.0412 0.3595 37 1 6.9333 -1.1842 2.1442 38 1 6.8196 0.4122 4.4532 39 1 5.7525 -0.4013 5.6392 40 1 9.1637 0.4166 7.1652 41 1 8.5858 1.2606 5.7085 42 1 8.1783 2.9497 7.6780 43 1 7.7405 5.8666 9.2401 44 1 9.6047 -1.8339 5.6991 45 1 9.3628 -0.5342 4.4925 46 1 9.0084 -3.9842 4.7906 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192843965.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:24 Heat of formation + Delta-G solvation = -85.660714 kcal Electronic energy + Delta-G solvation = -29392.247684 eV Core-core repulsion = 25091.623371 eV Total energy + Delta-G solvation = -4300.624313 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.47733 -39.34150 -38.12106 -37.66650 -35.69946 -34.54621 -33.83797 -33.70837 -31.84527 -31.23199 -29.92257 -28.09671 -27.43914 -26.51956 -24.63843 -23.98163 -21.53707 -21.03602 -20.65924 -19.16784 -18.99382 -17.87283 -17.55294 -17.53194 -17.03348 -16.18665 -16.05368 -15.86239 -15.44043 -15.27312 -14.84973 -14.56322 -14.43964 -14.11274 -13.91809 -13.82778 -13.37245 -13.26613 -12.95994 -12.90813 -12.78082 -12.62255 -12.11672 -11.91340 -11.78667 -11.73865 -11.50030 -11.29801 -11.00051 -10.96914 -10.84029 -10.68527 -10.41989 -10.26302 -10.18059 -10.09496 -9.63900 -9.46767 -9.23538 -8.48113 -8.07328 -7.93174 -6.40463 -3.80936 2.06372 2.49627 2.53870 2.79383 3.22346 3.27407 3.32766 3.65860 3.90857 4.00437 4.04709 4.18351 4.26986 4.36083 4.47613 4.54729 4.61816 4.70093 4.79801 4.85810 5.03418 5.06870 5.13717 5.25012 5.26243 5.35035 5.42597 5.49608 5.61699 5.66181 5.68730 5.73593 5.87437 6.02159 6.25650 6.28251 6.50452 6.64602 7.03144 7.13756 7.29533 7.30692 7.51138 7.57079 8.07444 8.11004 8.63054 9.19799 9.55041 10.07308 10.77299 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008331 B = 0.002924 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3359.946545 B = 9574.895762 C =12331.896046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.195 4.195 3 C 0.171 3.829 4 O -0.350 6.350 5 C 0.072 3.928 6 H 0.091 0.909 7 C -0.170 4.170 8 C 0.514 3.486 9 O -0.502 6.502 10 N -0.722 5.722 11 C 0.146 3.854 12 H 0.114 0.886 13 C 0.032 3.968 14 N -0.476 5.476 15 C 0.035 3.965 16 C 0.441 3.559 17 O -0.573 6.573 18 N -0.564 5.564 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.904 5.904 23 Si 0.930 3.070 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.273 1.273 27 C -0.002 4.002 28 C 0.100 3.900 29 H 0.066 0.934 30 O -0.549 6.549 31 H 0.223 0.777 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.397 0.603 38 H 0.043 0.957 39 H 0.115 0.885 40 H 0.093 0.907 41 H 0.048 0.952 42 H 0.391 0.609 43 H 0.272 0.728 44 H 0.089 0.911 45 H 0.050 0.950 46 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.258 -10.748 -22.305 24.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.195 4.195 3 C 0.095 3.905 4 O -0.268 6.268 5 C 0.011 3.989 6 H 0.109 0.891 7 C -0.228 4.228 8 C 0.298 3.702 9 O -0.374 6.374 10 N -0.377 5.377 11 C 0.041 3.959 12 H 0.132 0.868 13 C -0.097 4.097 14 N -0.201 5.201 15 C -0.097 4.097 16 C 0.226 3.774 17 O -0.457 6.457 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.545 5.545 23 Si 0.757 3.243 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.131 4.131 28 C 0.040 3.960 29 H 0.083 0.917 30 O -0.355 6.355 31 H 0.239 0.761 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.231 0.769 38 H 0.061 0.939 39 H 0.134 0.866 40 H 0.111 0.889 41 H 0.066 0.934 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.107 0.893 45 H 0.069 0.931 46 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 1.065 -11.495 -20.852 23.835 hybrid contribution 1.219 1.672 -0.766 2.206 sum 2.283 -9.823 -21.618 23.855 Atomic orbital electron populations 1.24988 0.95912 0.98908 0.98745 1.22384 0.93781 1.01642 1.01691 1.19183 0.85201 0.93524 0.92579 1.88144 1.18715 1.61487 1.58459 1.21898 0.83208 1.00414 0.93380 0.89123 1.22247 1.01646 0.99761 0.99159 1.20293 0.82599 0.77896 0.89426 1.90803 1.49786 1.45570 1.51198 1.45897 1.07166 1.72127 1.12515 1.21653 0.95373 0.97769 0.81094 0.86848 1.23608 0.97957 0.94459 0.93654 1.65209 1.03737 1.22342 1.28781 1.22108 0.98559 0.90192 0.98822 1.19684 0.89089 0.83146 0.85491 1.90533 1.29618 1.62798 1.62737 1.41841 1.17799 1.13423 1.47008 1.19668 0.97276 0.98316 1.27489 0.87926 1.25248 0.97792 0.96552 0.98301 1.69601 1.25210 1.13589 1.46123 0.85922 0.80544 0.77866 0.79948 1.19827 1.20995 1.19887 1.23923 0.95753 0.97861 0.95558 1.22649 0.95127 0.83301 0.94969 0.91659 1.86602 1.34197 1.29133 1.85521 0.76073 0.90464 0.90638 0.91047 0.90797 0.90815 0.76909 0.93925 0.86648 0.88918 0.93415 0.77549 0.91860 0.89262 0.93137 0.77417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 19.25 29.55 0.57 -1.06 16 2 C -0.19 -2.17 13.73 -37.12 -0.51 -2.68 16 3 C 0.17 1.58 6.22 34.37 0.21 1.79 16 4 O -0.35 -4.40 9.48 -55.09 -0.52 -4.92 16 5 C 0.07 0.69 3.13 -27.89 -0.09 0.60 16 6 H 0.09 0.58 7.79 -51.93 -0.40 0.18 16 7 C -0.17 -1.09 9.48 37.16 0.35 -0.73 16 8 C 0.51 6.90 7.18 -10.99 -0.08 6.82 16 9 O -0.50 -9.66 16.18 -14.31 -0.23 -9.89 16 10 N -0.72 -7.77 5.04 -52.47 -0.26 -8.04 16 11 C 0.15 2.04 3.19 -66.55 -0.21 1.82 16 12 H 0.11 1.97 7.44 -51.93 -0.39 1.59 16 13 C 0.03 0.55 5.30 -2.19 -0.01 0.54 16 14 N -0.48 -8.05 5.18 -231.40 -1.20 -9.25 16 15 C 0.03 0.62 5.39 -4.97 -0.03 0.60 16 16 C 0.44 10.61 7.43 -10.99 -0.08 10.53 16 17 O -0.57 -16.01 14.01 5.55 0.08 -15.93 16 18 N -0.56 -14.47 5.29 -10.96 -0.06 -14.52 16 19 C -0.30 -8.45 9.68 -14.93 -0.14 -8.59 16 20 H 0.10 3.07 7.16 -52.48 -0.38 2.69 16 21 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.75 13.05 55.50 0.72 -24.03 16 23 Si 0.93 21.47 29.55 -169.99 -5.02 16.45 16 24 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 27 C 0.00 -0.02 6.23 -2.17 -0.01 -0.04 16 28 C 0.10 1.05 4.19 -25.34 -0.11 0.94 16 29 H 0.07 0.46 7.65 -51.93 -0.40 0.07 16 30 O -0.55 -6.15 13.26 -35.23 -0.47 -6.62 16 31 H 0.22 1.29 7.80 -54.10 -0.42 0.87 16 32 H 0.08 0.60 8.08 -51.93 -0.42 0.18 16 33 H 0.08 0.46 7.87 -51.93 -0.41 0.05 16 34 H 0.07 0.33 7.87 -51.93 -0.41 -0.08 16 35 H 0.07 0.30 7.92 -51.93 -0.41 -0.11 16 36 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 37 H 0.40 2.61 8.11 -40.82 -0.33 2.28 16 38 H 0.04 0.70 7.87 -51.93 -0.41 0.30 16 39 H 0.12 2.58 6.54 -51.93 -0.34 2.24 16 40 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 41 H 0.05 0.75 7.98 -51.93 -0.41 0.34 16 42 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 43 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 44 H 0.09 0.91 8.08 -51.93 -0.42 0.49 16 45 H 0.05 0.49 7.92 -51.93 -0.41 0.08 16 46 H 0.38 2.31 9.12 45.56 0.42 2.73 16 LS Contribution 395.96 15.07 5.97 5.97 Total: -1.00 -39.34 395.96 -7.08 -46.42 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: -5.85 Total: 13.30 kcal Atomic # 6 Polarization: 11.29 SS G_CDS: -0.23 Total: 11.06 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: -0.80 Total: -55.84 kcal Atomic # 8 Polarization: -36.22 SS G_CDS: -1.14 Total: -37.36 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -39.34 -7.08 -46.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192843965.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.239 kcal (2) G-P(sol) polarization free energy of solvation -39.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds