Wall clock time and date at job start Sat Apr 11 2020 05:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 O 1.42899 * 109.47394 * 313.59182 * 3 2 1 5 5 C 1.42900 * 113.99738 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.46885 * 29.99964 * 5 4 3 7 7 C 1.52998 * 109.47299 * 269.99999 * 5 4 3 8 8 C 1.50697 * 109.46752 * 150.00144 * 5 4 3 9 9 O 1.21283 * 120.00274 * 4.99800 * 8 5 4 10 10 N 1.34780 * 120.00091 * 185.00080 * 8 5 4 11 11 C 1.46495 * 120.00343 * 179.97438 * 10 8 5 12 12 H 1.09001 * 110.28528 * 34.30056 * 11 10 8 13 13 C 1.54374 * 110.41379 * 272.11498 * 11 10 8 14 14 N 1.48555 * 104.59646 * 217.20522 * 13 11 10 15 15 C 1.46904 * 110.99825 * 159.03543 * 14 13 11 16 16 C 1.50703 * 109.46986 * 61.07751 * 15 14 13 17 17 O 1.21287 * 119.99865 * 6.05954 * 16 15 14 18 18 N 1.34773 * 119.99986 * 186.05593 * 16 15 14 19 19 C 1.37092 * 120.00186 * 179.97438 * 18 16 15 20 20 H 1.08004 * 119.99675 * 0.02562 * 19 18 16 21 21 C 1.38954 * 120.00244 * 179.97438 * 19 18 16 22 22 N 1.31409 * 119.99980 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00095 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47021 * 60.00364 * 23 21 19 25 25 H 1.48494 * 109.47154 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47016 * 300.00640 * 23 21 19 27 27 C 1.48565 * 104.22430 * 39.48442 * 14 13 11 28 28 C 1.54262 * 110.32442 * 156.42174 * 11 10 8 29 29 H 1.09000 * 110.32153 * 0.02562 * 28 11 10 30 30 O 1.42898 * 110.32737 * 237.89359 * 28 11 10 31 31 H 4.38454 * 5.44365 * 179.97438 * 4 1 2 32 32 H 1.08996 * 109.46499 * 193.58868 * 3 2 1 33 33 H 1.09005 * 109.46836 * 73.59326 * 3 2 1 34 34 H 1.08998 * 109.47337 * 59.99959 * 7 5 4 35 35 H 1.08997 * 109.47235 * 180.02562 * 7 5 4 36 36 H 1.09009 * 109.47007 * 300.00598 * 7 5 4 37 37 H 0.97005 * 119.99568 * 359.97438 * 10 8 5 38 38 H 1.09004 * 110.41010 * 335.98680 * 13 11 10 39 39 H 1.09000 * 110.41123 * 98.42513 * 13 11 10 40 40 H 1.09003 * 109.47034 * 181.07201 * 15 14 13 41 41 H 1.08993 * 109.47290 * 301.07312 * 15 14 13 42 42 H 0.97001 * 119.99921 * 359.97438 * 18 16 15 43 43 H 0.97000 * 120.00235 * 179.97438 * 22 21 19 44 44 H 1.08999 * 110.41354 * 201.74305 * 27 14 13 45 45 H 1.09001 * 110.51210 * 79.33794 * 27 14 13 46 46 H 0.96700 * 114.00172 * 179.97438 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1228 -0.9281 0.9758 5 6 4.5474 -1.0047 1.0578 6 1 4.9791 -0.0402 0.7905 7 6 5.0570 -2.0767 0.0923 8 6 4.9509 -1.3632 2.4648 9 8 4.1024 -1.6248 3.2910 10 7 6.2547 -1.3931 2.8051 11 6 6.6470 -1.7411 4.1730 12 1 5.9614 -2.4810 4.5861 13 6 6.6742 -0.4798 5.0627 14 7 7.8350 -0.6844 5.9668 15 6 8.3016 0.5931 6.5219 16 6 7.1952 1.2249 7.3270 17 8 6.1632 0.6178 7.5203 18 7 7.3527 2.4644 7.8322 19 6 6.3462 3.0393 8.5641 20 1 5.4271 2.4988 8.7362 21 6 6.5087 4.3170 9.0855 22 7 7.6272 4.9745 8.8765 23 14 5.1374 5.1001 10.0833 24 1 4.8504 4.2607 11.2742 25 1 5.5563 6.4555 10.5220 26 1 3.9152 5.2068 9.2466 27 6 8.8719 -1.2970 5.0968 28 6 8.0926 -2.2788 4.1954 29 1 8.5105 -2.2835 3.1887 30 8 8.1242 -3.5948 4.7515 31 1 -1.0499 0.0000 0.0003 32 1 3.0088 0.9997 0.2415 33 1 3.0095 -0.2895 -0.9859 34 1 4.7651 -1.8174 -0.9254 35 1 6.1435 -2.1354 0.1552 36 1 4.6251 -3.0412 0.3595 37 1 6.9333 -1.1842 2.1442 38 1 6.8196 0.4122 4.4532 39 1 5.7525 -0.4013 5.6392 40 1 9.1637 0.4166 7.1652 41 1 8.5858 1.2606 5.7085 42 1 8.1783 2.9497 7.6780 43 1 7.7405 5.8666 9.2401 44 1 9.6047 -1.8339 5.6991 45 1 9.3628 -0.5342 4.4925 46 1 9.0084 -3.9842 4.7906 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192843965.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:24 Heat of formation + Delta-G solvation = -121.970313 kcal Electronic energy + Delta-G solvation = -29393.822186 eV Core-core repulsion = 25091.623371 eV Total energy + Delta-G solvation = -4302.198815 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.54037 -40.57343 -39.59429 -38.72871 -36.78967 -35.97233 -35.58458 -34.46137 -33.33714 -32.62555 -31.04897 -29.16655 -28.10870 -28.05705 -26.18047 -25.04021 -22.77936 -21.97601 -21.68932 -21.01518 -19.90766 -19.73508 -18.44878 -18.42959 -17.87876 -17.71073 -17.13354 -16.81083 -16.67796 -16.45177 -16.34322 -15.86403 -15.72582 -15.55401 -15.31430 -14.90889 -14.58363 -14.23507 -14.17089 -13.97866 -13.61400 -13.59712 -13.44212 -13.23249 -13.16359 -12.97892 -12.85995 -12.49971 -12.46942 -12.46596 -12.15024 -11.85073 -11.75064 -11.59853 -11.51140 -11.09719 -10.92657 -10.52165 -10.37120 -10.26532 -10.03548 -9.41111 -8.49779 -5.98145 1.28212 1.36398 1.38224 1.47604 1.49116 1.78010 1.90070 2.02337 2.26405 2.80762 2.99458 3.15138 3.18734 3.31240 3.50834 3.57593 3.63519 3.80165 3.89048 3.95783 4.04424 4.16795 4.21756 4.26138 4.40396 4.44110 4.47674 4.51892 4.65312 4.70819 4.75417 4.81989 4.90985 4.98111 5.04172 5.21712 5.26048 5.37698 5.74460 5.87095 5.96179 6.05493 6.46008 6.56212 6.58319 6.97944 7.10615 7.17421 7.53045 8.10882 8.67429 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008331 B = 0.002924 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3359.946545 B = 9574.895762 C =12331.896046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.240 4.240 3 C 0.164 3.836 4 O -0.393 6.393 5 C 0.075 3.925 6 H 0.129 0.871 7 C -0.163 4.163 8 C 0.504 3.496 9 O -0.576 6.576 10 N -0.698 5.698 11 C 0.150 3.850 12 H 0.066 0.934 13 C 0.039 3.961 14 N -0.507 5.507 15 C 0.049 3.951 16 C 0.434 3.566 17 O -0.621 6.621 18 N -0.571 5.571 19 C -0.335 4.335 20 H 0.072 0.928 21 C -0.009 4.009 22 N -0.918 5.918 23 Si 0.989 3.011 24 H -0.273 1.273 25 H -0.265 1.265 26 H -0.275 1.275 27 C 0.000 4.000 28 C 0.114 3.886 29 H 0.119 0.881 30 O -0.575 6.575 31 H 0.251 0.749 32 H 0.089 0.911 33 H 0.110 0.890 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.050 0.950 37 H 0.423 0.577 38 H 0.048 0.952 39 H 0.047 0.953 40 H 0.118 0.882 41 H 0.078 0.922 42 H 0.398 0.602 43 H 0.279 0.721 44 H 0.108 0.892 45 H 0.084 0.916 46 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.143 -10.355 -24.981 27.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.240 4.240 3 C 0.090 3.910 4 O -0.312 6.312 5 C 0.014 3.986 6 H 0.146 0.854 7 C -0.220 4.220 8 C 0.291 3.709 9 O -0.453 6.453 10 N -0.354 5.354 11 C 0.044 3.956 12 H 0.085 0.915 13 C -0.091 4.091 14 N -0.232 5.232 15 C -0.082 4.082 16 C 0.221 3.779 17 O -0.507 6.507 18 N -0.209 5.209 19 C -0.465 4.465 20 H 0.091 0.909 21 C -0.209 4.209 22 N -0.558 5.558 23 Si 0.813 3.187 24 H -0.199 1.199 25 H -0.189 1.189 26 H -0.200 1.200 27 C -0.128 4.128 28 C 0.054 3.946 29 H 0.136 0.864 30 O -0.384 6.384 31 H 0.267 0.733 32 H 0.107 0.893 33 H 0.128 0.872 34 H 0.114 0.886 35 H 0.122 0.878 36 H 0.069 0.931 37 H 0.262 0.738 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.136 0.864 41 H 0.095 0.905 42 H 0.232 0.768 43 H 0.088 0.912 44 H 0.126 0.874 45 H 0.102 0.898 46 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 4.059 -11.097 -23.584 26.378 hybrid contribution 0.295 1.502 0.080 1.533 sum 4.354 -9.596 -23.504 25.758 Atomic orbital electron populations 1.25883 0.97008 0.97884 0.97753 1.23243 0.95272 1.02709 1.02743 1.19494 0.84398 0.93648 0.93493 1.88089 1.20611 1.62553 1.59956 1.22124 0.82335 1.03283 0.90850 0.85369 1.22263 1.03261 0.97284 0.99236 1.21313 0.82555 0.76307 0.90731 1.90774 1.51898 1.49012 1.53647 1.45638 1.07207 1.70778 1.11780 1.21306 0.97246 0.95208 0.81877 0.91524 1.23281 0.95779 0.96504 0.93509 1.65092 1.05474 1.21874 1.30804 1.21986 0.96095 0.90971 0.99154 1.20915 0.90003 0.82323 0.84649 1.90524 1.32172 1.63815 1.64150 1.41889 1.17506 1.14216 1.47314 1.19569 0.97550 0.99415 1.29964 0.90950 1.25969 1.00034 0.96279 0.98613 1.69645 1.26094 1.13956 1.46137 0.85053 0.77759 0.77617 0.78291 1.19878 1.18933 1.20028 1.24122 0.94613 0.98488 0.95527 1.22626 0.91831 0.82802 0.97369 0.86375 1.86562 1.36601 1.29399 1.85851 0.73271 0.89324 0.87228 0.88594 0.87752 0.93116 0.73768 0.93339 0.93434 0.86425 0.90456 0.76832 0.91167 0.87417 0.89778 0.74658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.25 19.25 74.32 1.43 -1.82 16 2 C -0.24 -5.37 13.73 31.13 0.43 -4.94 16 3 C 0.16 2.91 6.22 70.18 0.44 3.35 16 4 O -0.39 -9.98 9.48 -129.99 -1.23 -11.22 16 5 C 0.07 1.31 3.13 29.85 0.09 1.41 16 6 H 0.13 1.24 7.79 -2.39 -0.02 1.22 16 7 C -0.16 -1.62 9.48 71.98 0.68 -0.94 16 8 C 0.50 13.85 7.18 87.66 0.63 14.48 16 9 O -0.58 -24.22 16.18 15.95 0.26 -23.96 16 10 N -0.70 -14.17 5.04 -438.31 -2.21 -16.38 16 11 C 0.15 4.21 3.19 45.89 0.15 4.35 16 12 H 0.07 2.53 7.44 -2.39 -0.02 2.51 16 13 C 0.04 1.39 5.30 86.45 0.46 1.85 16 14 N -0.51 -16.78 5.18 -886.02 -4.59 -21.38 16 15 C 0.05 1.70 5.39 85.56 0.46 2.16 16 16 C 0.43 21.59 7.43 87.66 0.65 22.24 16 17 O -0.62 -37.03 14.01 -3.05 -0.04 -37.07 16 18 N -0.57 -30.15 5.29 -306.99 -1.62 -31.78 16 19 C -0.34 -19.77 9.68 84.04 0.81 -18.95 16 20 H 0.07 4.62 7.16 -2.91 -0.02 4.60 16 21 C -0.01 -0.49 5.50 84.93 0.47 -0.02 16 22 N -0.92 -49.93 13.05 21.66 0.28 -49.64 16 23 Si 0.99 44.35 29.55 68.60 2.03 46.38 16 24 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 25 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 26 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 27 C 0.00 0.00 6.23 86.45 0.54 0.54 16 28 C 0.11 2.01 4.19 31.49 0.13 2.15 16 29 H 0.12 0.93 7.65 -2.39 -0.02 0.91 16 30 O -0.57 -11.51 13.26 -148.98 -1.98 -13.49 16 31 H 0.25 2.70 7.80 -4.42 -0.03 2.67 16 32 H 0.09 1.28 8.08 -2.39 -0.02 1.26 16 33 H 0.11 1.09 7.87 -2.38 -0.02 1.07 16 34 H 0.10 0.52 7.87 -2.39 -0.02 0.50 16 35 H 0.10 0.38 7.92 -2.39 -0.02 0.36 16 36 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 37 H 0.42 3.90 8.11 -92.70 -0.75 3.14 16 38 H 0.05 1.62 7.87 -2.39 -0.02 1.60 16 39 H 0.05 2.35 6.54 -2.39 -0.02 2.34 16 40 H 0.12 3.49 8.14 -2.39 -0.02 3.47 16 41 H 0.08 2.22 7.98 -2.39 -0.02 2.20 16 42 H 0.40 19.52 7.90 -92.71 -0.73 18.79 16 43 H 0.28 14.17 8.31 -92.71 -0.77 13.40 16 44 H 0.11 1.70 8.08 -2.39 -0.02 1.68 16 45 H 0.08 1.11 7.92 -2.39 -0.02 1.09 16 46 H 0.40 3.48 9.12 -74.06 -0.68 2.81 16 Total: -1.00 -96.89 395.96 -2.87 -99.75 By element: Atomic # 1 Polarization: 34.06 SS G_CDS: -1.13 Total: 32.94 kcal Atomic # 6 Polarization: 18.48 SS G_CDS: 7.37 Total: 25.85 kcal Atomic # 7 Polarization: -111.04 SS G_CDS: -8.14 Total: -119.18 kcal Atomic # 8 Polarization: -82.75 SS G_CDS: -2.99 Total: -85.74 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -96.89 -2.87 -99.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192843965.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.217 kcal (2) G-P(sol) polarization free energy of solvation -96.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds