Wall clock time and date at job start Sat Apr 11 2020 05:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42901 * 109.46997 * 2 1 4 4 C 1.35729 * 117.00228 * 179.97438 * 3 2 1 5 5 C 1.41853 * 126.79082 * 180.23309 * 4 3 2 6 6 C 1.36658 * 103.81402 * 180.12304 * 5 4 3 7 7 C 1.47547 * 126.87914 * 179.97438 * 6 5 4 8 8 O 1.21578 * 119.99916 * 6.65236 * 7 6 5 9 9 N 1.34774 * 119.99722 * 186.65680 * 7 6 5 10 10 C 1.47511 * 118.75467 * 176.92307 * 9 7 6 11 11 C 1.53575 * 111.03041 * 138.34185 * 10 9 7 12 12 C 1.51533 * 109.57790 * 320.02276 * 11 10 9 13 13 O 1.42157 * 108.75627 * 91.40201 * 12 11 10 14 14 C 1.38016 * 119.43735 * 272.76673 * 13 12 11 15 15 H 1.08993 * 109.46809 * 303.42242 * 14 13 12 16 16 C 1.53008 * 109.46402 * 183.42761 * 14 13 12 17 17 N 1.46498 * 109.47238 * 64.99484 * 16 14 13 18 18 C 1.36934 * 119.99968 * 179.72319 * 17 16 14 19 19 H 1.07992 * 120.00211 * 0.27165 * 18 17 16 20 20 C 1.38819 * 119.99690 * 180.27420 * 18 17 16 21 21 N 1.31611 * 119.99866 * 359.97438 * 20 18 17 22 22 Si 1.86792 * 119.99695 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47685 * 89.99743 * 22 20 18 24 24 H 1.48504 * 109.47382 * 209.99959 * 22 20 18 25 25 H 1.48507 * 109.47325 * 329.99847 * 22 20 18 26 26 C 1.45128 * 118.75848 * 356.89472 * 9 7 6 27 27 O 1.34658 * 106.23897 * 359.67093 * 6 5 4 28 28 N 1.20874 * 111.63435 * 0.22036 * 27 6 5 29 29 H 1.09000 * 109.46750 * 60.00281 * 1 2 3 30 30 H 1.08996 * 109.46683 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47034 * 300.00077 * 1 2 3 32 32 H 1.09001 * 109.46981 * 240.00467 * 2 1 3 33 33 H 1.09003 * 109.47253 * 119.99743 * 2 1 3 34 34 H 1.08009 * 128.09085 * 0.03718 * 5 4 3 35 35 H 1.09004 * 109.16433 * 258.74007 * 10 9 7 36 36 H 1.08999 * 109.16777 * 17.94816 * 10 9 7 37 37 H 1.09002 * 109.45008 * 80.05244 * 11 10 9 38 38 H 1.08998 * 109.45378 * 199.98771 * 11 10 9 39 39 H 1.09007 * 109.58499 * 211.17962 * 12 11 10 40 40 H 1.08996 * 109.59211 * 331.61964 * 12 11 10 41 41 H 1.08997 * 109.47494 * 304.98893 * 16 14 13 42 42 H 1.09009 * 109.46443 * 184.99202 * 16 14 13 43 43 H 0.97004 * 119.99728 * 359.97438 * 17 16 14 44 44 H 0.97007 * 119.99598 * 179.97438 * 21 20 18 45 45 H 1.09007 * 109.45501 * 149.28739 * 26 9 7 46 46 H 1.08991 * 109.46040 * 29.33182 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3519 1.5252 0.0005 5 6 4.0452 2.7628 0.0053 6 6 5.3625 2.3989 0.0009 7 6 6.5303 3.3007 0.0025 8 8 6.3724 4.4994 0.1302 9 7 7.7719 2.7955 -0.1377 10 6 8.9139 3.7270 -0.2013 11 6 10.1000 3.2017 0.6208 12 6 9.5918 2.5840 1.9078 13 8 9.3662 1.1972 1.6913 14 6 8.1467 0.7769 1.2002 15 1 7.3505 1.1262 1.8575 16 6 8.1221 -0.7516 1.1367 17 7 8.2028 -1.2981 2.4935 18 6 8.1914 -2.6536 2.6874 19 1 8.1274 -3.3199 1.8399 20 6 8.2622 -3.1713 3.9735 21 7 8.3408 -2.3594 5.0063 22 14 8.2474 -5.0204 4.2381 23 1 9.6406 -5.5340 4.2217 24 1 7.6218 -5.3279 5.5493 25 1 7.4679 -5.6694 3.1534 26 6 7.9348 1.3558 -0.2198 27 8 5.3812 1.0524 0.0016 28 7 4.2639 0.5912 0.0015 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.6293 3.7595 0.0097 35 1 9.2226 3.8444 -1.2401 36 1 8.6075 4.6963 0.1919 37 1 10.6364 2.4485 0.0437 38 1 10.7730 4.0265 0.8550 39 1 10.3351 2.7149 2.6944 40 1 8.6584 3.0648 2.2004 41 1 8.9712 -1.1048 0.5516 42 1 7.1951 -1.0807 0.6669 43 1 8.2607 -0.6997 3.2548 44 1 8.3898 -2.7212 5.9051 45 1 8.8006 1.1231 -0.8399 46 1 7.0422 0.9140 -0.6625 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200982605.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:41 Heat of formation + Delta-G solvation = -14.998853 kcal Electronic energy + Delta-G solvation = -30887.741789 eV Core-core repulsion = 26590.181604 eV Total energy + Delta-G solvation = -4297.560185 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.13711 -40.64795 -39.14878 -38.68206 -35.62055 -34.82983 -33.66214 -33.31293 -31.95714 -31.34254 -30.89714 -28.84081 -26.92003 -25.56631 -24.42424 -23.59323 -23.27776 -22.48416 -21.30314 -21.03639 -20.36806 -18.46470 -18.07320 -17.34781 -17.09184 -16.88658 -16.50222 -16.15258 -16.10794 -15.74479 -15.05405 -14.84275 -14.66240 -14.29961 -14.12061 -13.75030 -13.55767 -13.31834 -13.13544 -13.07112 -12.93348 -12.61197 -12.34085 -12.13369 -12.06103 -11.83217 -11.46459 -11.37391 -11.31668 -10.95149 -10.78142 -10.76493 -10.55584 -10.24644 -10.05435 -9.99871 -9.67545 -9.47918 -9.43465 -8.82304 -8.73301 -6.84068 -5.68745 -2.96782 0.58054 1.97103 2.28098 2.42446 2.71563 2.99876 3.48017 3.52663 3.54501 3.91052 3.92155 4.27519 4.55934 4.61822 4.67350 4.69663 4.71866 4.79713 4.92543 4.95863 5.05634 5.08029 5.14736 5.30337 5.35868 5.44980 5.49637 5.50942 5.54430 5.59622 5.64751 5.72448 5.80644 5.91045 5.99131 6.07934 6.20045 6.32115 6.66223 6.76055 6.79581 6.89648 7.59520 7.75686 7.93783 7.98958 8.49348 9.61038 10.19001 10.54529 11.54209 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007163 B = 0.004584 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3908.099433 B = 6106.959672 C = 9530.325295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.283 6.283 4 C 0.204 3.796 5 C -0.151 4.151 6 C -0.066 4.066 7 C 0.602 3.398 8 O -0.515 6.515 9 N -0.592 5.592 10 C 0.111 3.889 11 C -0.166 4.166 12 C 0.071 3.929 13 O -0.366 6.366 14 C 0.090 3.910 15 H 0.049 0.951 16 C 0.166 3.834 17 N -0.725 5.725 18 C -0.236 4.236 19 H 0.070 0.930 20 C -0.014 4.014 21 N -0.932 5.932 22 Si 0.906 3.094 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 C 0.059 3.941 27 O 0.129 5.871 28 N -0.380 5.380 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.189 0.811 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.048 0.952 41 H 0.029 0.971 42 H 0.039 0.961 43 H 0.386 0.614 44 H 0.254 0.746 45 H 0.097 0.903 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.966 13.173 -13.995 20.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.190 6.190 4 C 0.007 3.993 5 C -0.174 4.174 6 C -0.132 4.132 7 C 0.387 3.613 8 O -0.391 6.391 9 N -0.323 5.323 10 C -0.010 4.010 11 C -0.204 4.204 12 C -0.006 4.006 13 O -0.283 6.283 14 C 0.030 3.970 15 H 0.067 0.933 16 C 0.038 3.962 17 N -0.370 5.370 18 C -0.367 4.367 19 H 0.088 0.912 20 C -0.210 4.210 21 N -0.581 5.581 22 Si 0.737 3.263 23 H -0.218 1.218 24 H -0.219 1.219 25 H -0.208 1.208 26 C -0.065 4.065 27 O 0.063 5.937 28 N -0.103 5.103 29 H 0.085 0.915 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.206 0.794 35 H 0.090 0.910 36 H 0.113 0.887 37 H 0.102 0.898 38 H 0.106 0.894 39 H 0.110 0.890 40 H 0.067 0.933 41 H 0.046 0.954 42 H 0.056 0.944 43 H 0.220 0.780 44 H 0.064 0.936 45 H 0.115 0.885 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.197 12.385 -13.935 19.984 hybrid contribution -0.409 -0.128 0.406 0.590 sum -7.606 12.257 -13.529 19.776 Atomic orbital electron populations 1.21792 0.92160 1.03291 1.03513 1.22883 0.95855 0.80325 1.02903 1.86189 1.12881 1.30544 1.89365 1.21800 0.86000 0.90264 1.01250 1.22121 0.89980 0.99257 1.06020 1.23897 0.96303 0.84808 1.08188 1.16717 0.81221 0.85992 0.77383 1.90845 1.84700 1.13420 1.50146 1.47854 1.05826 1.08039 1.70621 1.21970 0.85107 0.93077 1.00873 1.22511 0.97465 1.02138 0.98271 1.22168 1.00362 0.82149 0.95930 1.86460 1.34864 1.23041 1.83981 1.22314 0.86484 0.96881 0.91309 0.93273 1.20625 0.98747 0.86632 0.90205 1.42205 1.88927 1.04497 1.01335 1.19215 1.42206 0.83093 0.92176 0.91166 1.24717 1.03174 0.97539 0.95545 1.69675 1.57634 1.33053 0.97754 0.86207 0.77529 0.85526 0.77039 1.21755 1.21890 1.20801 1.23051 1.04683 0.78188 1.00541 1.85249 1.22331 1.18220 1.67918 1.74073 0.90715 1.22264 1.23295 0.91494 0.89858 0.91325 0.91424 0.91077 0.79406 0.90954 0.88671 0.89830 0.89381 0.89019 0.93347 0.95357 0.94380 0.77973 0.93635 0.88496 0.88002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.28 37.16 0.38 -0.75 16 2 C 0.06 0.58 6.38 37.16 0.24 0.82 16 3 O -0.28 -3.57 10.21 -18.90 -0.19 -3.76 16 4 C 0.20 2.81 8.00 -16.72 -0.13 2.68 16 5 C -0.15 -1.90 10.97 -38.77 -0.43 -2.33 16 6 C -0.07 -0.89 6.85 -36.36 -0.25 -1.14 16 7 C 0.60 8.11 7.63 -12.47 -0.10 8.02 16 8 O -0.51 -7.76 16.21 5.30 0.09 -7.67 16 9 N -0.59 -7.14 2.19 -173.69 -0.38 -7.52 16 10 C 0.11 1.09 6.17 -3.19 -0.02 1.07 16 11 C -0.17 -1.61 5.79 -27.17 -0.16 -1.76 16 12 C 0.07 0.93 6.37 36.42 0.23 1.16 16 13 O -0.37 -6.25 9.38 -26.54 -0.25 -6.50 16 14 C 0.09 1.51 2.32 -25.78 -0.06 1.45 16 15 H 0.05 0.90 8.11 -51.93 -0.42 0.48 16 16 C 0.17 3.36 5.92 -4.04 -0.02 3.34 16 17 N -0.73 -18.90 5.54 -59.90 -0.33 -19.23 16 18 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 19 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 20 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 21 N -0.93 -28.82 13.06 55.49 0.72 -28.09 16 22 Si 0.91 22.73 29.55 -169.99 -5.02 17.71 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 24 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 26 C 0.06 0.75 4.47 -3.83 -0.02 0.74 16 27 O 0.13 1.88 7.48 15.51 0.12 2.00 16 28 N -0.38 -5.77 11.50 30.47 0.35 -5.42 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.19 1.94 8.06 -52.48 -0.42 1.51 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.09 0.97 6.96 -51.93 -0.36 0.61 16 37 H 0.08 0.84 8.01 -51.93 -0.42 0.42 16 38 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.05 0.66 7.40 -51.93 -0.38 0.28 16 41 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.04 0.76 8.14 -51.92 -0.42 0.34 16 43 H 0.39 10.79 7.65 -40.82 -0.31 10.48 16 44 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 45 H 0.10 1.09 8.11 -51.92 -0.42 0.67 16 46 H 0.10 1.28 4.76 -52.01 -0.25 1.03 16 LS Contribution 379.72 15.07 5.72 5.72 Total: -1.00 -33.95 379.72 -6.52 -40.46 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -6.76 Total: 6.38 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: -0.58 Total: 5.92 kcal Atomic # 7 Polarization: -60.63 SS G_CDS: 0.36 Total: -60.26 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.24 Total: -15.92 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.95 -6.52 -40.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200982605.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.462 kcal (2) G-P(sol) polarization free energy of solvation -33.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds