Wall clock time and date at job start Sat Apr 11 2020 05:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42901 * 109.46997 * 2 1 4 4 C 1.35729 * 117.00228 * 179.97438 * 3 2 1 5 5 C 1.41853 * 126.79082 * 180.23309 * 4 3 2 6 6 C 1.36658 * 103.81402 * 180.12304 * 5 4 3 7 7 C 1.47547 * 126.87914 * 179.97438 * 6 5 4 8 8 O 1.21578 * 119.99916 * 6.65236 * 7 6 5 9 9 N 1.34774 * 119.99722 * 186.65680 * 7 6 5 10 10 C 1.47511 * 118.75467 * 176.92307 * 9 7 6 11 11 C 1.53575 * 111.03041 * 138.34185 * 10 9 7 12 12 C 1.51533 * 109.57790 * 320.02276 * 11 10 9 13 13 O 1.42157 * 108.75627 * 91.40201 * 12 11 10 14 14 C 1.38016 * 119.43735 * 272.76673 * 13 12 11 15 15 H 1.08993 * 109.46809 * 303.42242 * 14 13 12 16 16 C 1.53008 * 109.46402 * 183.42761 * 14 13 12 17 17 N 1.46498 * 109.47238 * 64.99484 * 16 14 13 18 18 C 1.36934 * 119.99968 * 179.72319 * 17 16 14 19 19 H 1.07992 * 120.00211 * 0.27165 * 18 17 16 20 20 C 1.38819 * 119.99690 * 180.27420 * 18 17 16 21 21 N 1.31611 * 119.99866 * 359.97438 * 20 18 17 22 22 Si 1.86792 * 119.99695 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47685 * 89.99743 * 22 20 18 24 24 H 1.48504 * 109.47382 * 209.99959 * 22 20 18 25 25 H 1.48507 * 109.47325 * 329.99847 * 22 20 18 26 26 C 1.45128 * 118.75848 * 356.89472 * 9 7 6 27 27 O 1.34658 * 106.23897 * 359.67093 * 6 5 4 28 28 N 1.20874 * 111.63435 * 0.22036 * 27 6 5 29 29 H 1.09000 * 109.46750 * 60.00281 * 1 2 3 30 30 H 1.08996 * 109.46683 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47034 * 300.00077 * 1 2 3 32 32 H 1.09001 * 109.46981 * 240.00467 * 2 1 3 33 33 H 1.09003 * 109.47253 * 119.99743 * 2 1 3 34 34 H 1.08009 * 128.09085 * 0.03718 * 5 4 3 35 35 H 1.09004 * 109.16433 * 258.74007 * 10 9 7 36 36 H 1.08999 * 109.16777 * 17.94816 * 10 9 7 37 37 H 1.09002 * 109.45008 * 80.05244 * 11 10 9 38 38 H 1.08998 * 109.45378 * 199.98771 * 11 10 9 39 39 H 1.09007 * 109.58499 * 211.17962 * 12 11 10 40 40 H 1.08996 * 109.59211 * 331.61964 * 12 11 10 41 41 H 1.08997 * 109.47494 * 304.98893 * 16 14 13 42 42 H 1.09009 * 109.46443 * 184.99202 * 16 14 13 43 43 H 0.97004 * 119.99728 * 359.97438 * 17 16 14 44 44 H 0.97007 * 119.99598 * 179.97438 * 21 20 18 45 45 H 1.09007 * 109.45501 * 149.28739 * 26 9 7 46 46 H 1.08991 * 109.46040 * 29.33182 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3519 1.5252 0.0005 5 6 4.0452 2.7628 0.0053 6 6 5.3625 2.3989 0.0009 7 6 6.5303 3.3007 0.0025 8 8 6.3724 4.4994 0.1302 9 7 7.7719 2.7955 -0.1377 10 6 8.9139 3.7270 -0.2013 11 6 10.1000 3.2017 0.6208 12 6 9.5918 2.5840 1.9078 13 8 9.3662 1.1972 1.6913 14 6 8.1467 0.7769 1.2002 15 1 7.3505 1.1262 1.8575 16 6 8.1221 -0.7516 1.1367 17 7 8.2028 -1.2981 2.4935 18 6 8.1914 -2.6536 2.6874 19 1 8.1274 -3.3199 1.8399 20 6 8.2622 -3.1713 3.9735 21 7 8.3408 -2.3594 5.0063 22 14 8.2474 -5.0204 4.2381 23 1 9.6406 -5.5340 4.2217 24 1 7.6218 -5.3279 5.5493 25 1 7.4679 -5.6694 3.1534 26 6 7.9348 1.3558 -0.2198 27 8 5.3812 1.0524 0.0016 28 7 4.2639 0.5912 0.0015 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.6293 3.7595 0.0097 35 1 9.2226 3.8444 -1.2401 36 1 8.6075 4.6963 0.1919 37 1 10.6364 2.4485 0.0437 38 1 10.7730 4.0265 0.8550 39 1 10.3351 2.7149 2.6944 40 1 8.6584 3.0648 2.2004 41 1 8.9712 -1.1048 0.5516 42 1 7.1951 -1.0807 0.6669 43 1 8.2607 -0.6997 3.2548 44 1 8.3898 -2.7212 5.9051 45 1 8.8006 1.1231 -0.8399 46 1 7.0422 0.9140 -0.6625 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200982605.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:40 Heat of formation + Delta-G solvation = -39.859788 kcal Electronic energy + Delta-G solvation = -30888.819840 eV Core-core repulsion = 26590.181604 eV Total energy + Delta-G solvation = -4298.638236 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -46.21571 -41.72275 -40.11389 -39.87644 -36.82510 -36.43087 -34.71672 -34.61247 -33.24718 -32.53480 -32.14727 -30.28518 -27.97792 -27.04857 -25.59001 -24.63050 -24.60539 -23.82475 -22.55361 -22.18214 -21.34153 -19.51058 -19.29960 -19.08985 -18.33686 -17.95035 -17.64219 -17.28460 -17.06246 -16.86178 -16.56058 -16.02439 -15.96503 -15.60109 -15.12905 -15.11543 -14.80451 -14.72991 -14.46781 -14.11246 -13.89960 -13.66057 -13.55287 -13.33859 -13.12367 -12.96595 -12.75684 -12.72274 -12.45854 -12.31123 -12.16748 -12.10445 -11.92163 -11.78666 -11.64101 -11.40392 -11.09383 -10.94121 -10.60300 -10.47791 -9.82399 -8.96583 -7.91137 -5.19750 -0.47450 0.90866 1.28088 1.45316 1.48172 1.50720 1.58786 1.66781 1.99859 2.58451 2.71416 2.89148 3.25919 3.43184 3.55923 3.61407 3.84276 3.87211 3.90025 3.95406 4.04162 4.07141 4.08426 4.25136 4.33149 4.34747 4.42164 4.49734 4.52378 4.70858 4.76446 4.77572 4.83931 4.84664 4.94940 5.08996 5.12628 5.13808 5.22249 5.29564 5.51634 5.82550 5.87014 6.29626 6.56084 6.72809 6.91345 7.36235 8.11676 8.35353 9.32896 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007163 B = 0.004584 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3908.099433 B = 6106.959672 C = 9530.325295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.048 3.952 3 O -0.286 6.286 4 C 0.200 3.800 5 C -0.144 4.144 6 C -0.074 4.074 7 C 0.603 3.397 8 O -0.532 6.532 9 N -0.587 5.587 10 C 0.107 3.893 11 C -0.153 4.153 12 C 0.064 3.936 13 O -0.393 6.393 14 C 0.103 3.897 15 H 0.024 0.976 16 C 0.164 3.836 17 N -0.740 5.740 18 C -0.241 4.241 19 H 0.079 0.921 20 C -0.077 4.077 21 N -0.972 5.972 22 Si 0.974 3.026 23 H -0.286 1.286 24 H -0.297 1.297 25 H -0.268 1.268 26 C 0.073 3.927 27 O 0.120 5.880 28 N -0.403 5.403 29 H 0.075 0.925 30 H 0.101 0.899 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.210 0.790 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.118 0.882 39 H 0.097 0.903 40 H 0.037 0.963 41 H 0.035 0.965 42 H 0.043 0.957 43 H 0.372 0.628 44 H 0.250 0.750 45 H 0.120 0.880 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.838 13.567 -15.800 21.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.026 4.026 3 O -0.193 6.193 4 C 0.003 3.997 5 C -0.167 4.167 6 C -0.140 4.140 7 C 0.388 3.612 8 O -0.409 6.409 9 N -0.317 5.317 10 C -0.013 4.013 11 C -0.191 4.191 12 C -0.012 4.012 13 O -0.312 6.312 14 C 0.043 3.957 15 H 0.042 0.958 16 C 0.037 3.963 17 N -0.383 5.383 18 C -0.373 4.373 19 H 0.097 0.903 20 C -0.269 4.269 21 N -0.623 5.623 22 Si 0.803 3.197 23 H -0.213 1.213 24 H -0.224 1.224 25 H -0.192 1.192 26 C -0.051 4.051 27 O 0.055 5.945 28 N -0.129 5.129 29 H 0.094 0.906 30 H 0.120 0.880 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.227 0.773 35 H 0.118 0.882 36 H 0.112 0.888 37 H 0.105 0.895 38 H 0.136 0.864 39 H 0.115 0.885 40 H 0.056 0.944 41 H 0.053 0.947 42 H 0.061 0.939 43 H 0.204 0.796 44 H 0.058 0.942 45 H 0.139 0.861 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -7.055 12.790 -15.797 21.515 hybrid contribution -0.452 -0.200 0.956 1.077 sum -7.508 12.590 -14.841 20.860 Atomic orbital electron populations 1.21814 0.89657 1.04649 1.03940 1.23104 0.97805 0.79390 1.02316 1.86209 1.12199 1.31781 1.89154 1.22042 0.86433 0.90496 1.00725 1.22431 0.89554 0.99820 1.04861 1.24071 0.96893 0.84553 1.08455 1.16724 0.81555 0.85699 0.77205 1.90835 1.84960 1.13975 1.51175 1.47915 1.06102 1.07951 1.69761 1.22211 0.84174 0.92298 1.02579 1.22430 0.97669 1.02904 0.96101 1.22392 1.00165 0.80348 0.98301 1.86387 1.34657 1.25565 1.84579 1.21984 0.85778 0.94623 0.93343 0.95788 1.20768 0.98880 0.89255 0.87417 1.42422 1.88912 1.03770 1.03153 1.19665 1.40639 0.84454 0.92513 0.90305 1.25570 1.03834 1.02113 0.95388 1.69847 1.59522 1.34983 0.97918 0.85133 0.77590 0.80169 0.76845 1.21296 1.22387 1.19241 1.22835 1.05830 0.78498 0.97913 1.85217 1.22202 1.18737 1.68387 1.74041 0.91187 1.23159 1.24474 0.90622 0.88011 0.91294 0.91252 0.92457 0.77275 0.88176 0.88809 0.89531 0.86403 0.88523 0.94438 0.94703 0.93879 0.79623 0.94174 0.86146 0.87726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 10.28 71.98 0.74 -1.23 16 2 C 0.05 1.00 6.38 71.98 0.46 1.46 16 3 O -0.29 -7.12 10.21 -90.53 -0.92 -8.05 16 4 C 0.20 5.49 8.00 85.78 0.69 6.18 16 5 C -0.14 -3.54 10.97 22.79 0.25 -3.29 16 6 C -0.07 -1.97 6.85 24.36 0.17 -1.80 16 7 C 0.60 15.65 7.63 86.70 0.66 16.32 16 8 O -0.53 -15.40 16.21 -3.96 -0.06 -15.46 16 9 N -0.59 -13.21 2.19 -821.70 -1.80 -15.01 16 10 C 0.11 1.82 6.17 86.38 0.53 2.35 16 11 C -0.15 -2.56 5.79 30.31 0.18 -2.38 16 12 C 0.06 1.62 6.37 71.50 0.46 2.08 16 13 O -0.39 -13.37 9.38 -117.88 -1.11 -14.47 16 14 C 0.10 3.44 2.32 31.21 0.07 3.51 16 15 H 0.02 0.92 8.11 -2.39 -0.02 0.90 16 16 C 0.16 6.65 5.92 86.38 0.51 7.16 16 17 N -0.74 -39.33 5.54 -343.44 -1.90 -41.24 16 18 C -0.24 -13.82 9.99 84.04 0.84 -12.98 16 19 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 20 C -0.08 -4.55 5.50 84.87 0.47 -4.09 16 21 N -0.97 -61.44 13.06 21.65 0.28 -61.15 16 22 Si 0.97 47.06 29.55 68.60 2.03 49.08 16 23 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 24 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 25 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 26 C 0.07 1.77 4.47 87.25 0.39 2.16 16 27 O 0.12 3.51 7.48 65.68 0.49 4.00 16 28 N -0.40 -12.38 11.50 -172.03 -1.98 -14.36 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.21 4.04 8.06 -2.91 -0.02 4.01 16 35 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.09 1.68 6.96 -2.39 -0.02 1.66 16 37 H 0.09 1.46 8.01 -2.39 -0.02 1.44 16 38 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.10 2.31 8.14 -2.38 -0.02 2.29 16 40 H 0.04 1.02 7.40 -2.39 -0.02 1.00 16 41 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 43 H 0.37 21.54 7.65 -92.71 -0.71 20.83 16 44 H 0.25 15.26 8.31 -92.70 -0.77 14.49 16 45 H 0.12 2.39 8.11 -2.38 -0.02 2.37 16 46 H 0.11 2.53 4.76 -3.52 -0.02 2.51 16 Total: -1.00 -74.08 379.72 1.73 -72.35 By element: Atomic # 1 Polarization: 28.56 SS G_CDS: 0.29 Total: 28.85 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: 6.41 Total: 15.45 kcal Atomic # 7 Polarization: -126.35 SS G_CDS: -5.40 Total: -131.75 kcal Atomic # 8 Polarization: -32.38 SS G_CDS: -1.60 Total: -33.98 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.08 kcal Total: -74.08 1.73 -72.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200982605.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.489 kcal (2) G-P(sol) polarization free energy of solvation -74.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds