Wall clock time and date at job start Sat Apr 11 2020 05:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42894 * 109.47218 * 2 1 4 4 C 1.35729 * 117.00208 * 180.02562 * 3 2 1 5 5 C 1.41855 * 126.78618 * 179.97438 * 4 3 2 6 6 C 1.36667 * 103.81185 * 180.02562 * 5 4 3 7 7 C 1.47538 * 126.88314 * 180.02562 * 6 5 4 8 8 O 1.21582 * 119.99901 * 353.77840 * 7 6 5 9 9 N 1.34773 * 120.00127 * 173.50490 * 7 6 5 10 10 C 1.47508 * 118.75595 * 174.35609 * 9 7 6 11 11 C 1.53203 * 111.23421 * 221.50897 * 10 9 7 12 12 C 1.51537 * 109.43559 * 40.26204 * 11 10 9 13 13 O 1.42152 * 108.76314 * 268.51038 * 12 11 10 14 14 C 1.38008 * 119.44165 * 87.21452 * 13 12 11 15 15 H 1.08999 * 109.47023 * 56.57350 * 14 13 12 16 16 C 1.53001 * 109.47414 * 176.56704 * 14 13 12 17 17 N 1.46507 * 109.47000 * 300.01391 * 16 14 13 18 18 C 1.36932 * 120.00219 * 179.97438 * 17 16 14 19 19 H 1.07998 * 120.00012 * 0.02562 * 18 17 16 20 20 C 1.38810 * 119.99842 * 179.97438 * 18 17 16 21 21 N 1.31609 * 120.00420 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99731 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47443 * 90.00283 * 22 20 18 24 24 H 1.48495 * 109.47010 * 210.00491 * 22 20 18 25 25 H 1.48502 * 109.47064 * 330.00087 * 22 20 18 26 26 C 1.45120 * 118.75660 * 354.61504 * 9 7 6 27 27 O 1.34664 * 106.23993 * 0.26137 * 6 5 4 28 28 N 1.20881 * 111.62953 * 359.52452 * 27 6 5 29 29 H 1.08995 * 109.47032 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46953 * 300.00385 * 1 2 3 31 31 H 1.08996 * 109.46401 * 60.00380 * 1 2 3 32 32 H 1.08998 * 109.46953 * 239.99615 * 2 1 3 33 33 H 1.09001 * 109.47099 * 119.99707 * 2 1 3 34 34 H 1.07992 * 128.09618 * 0.02562 * 5 4 3 35 35 H 1.09004 * 109.16847 * 342.02165 * 10 9 7 36 36 H 1.09001 * 109.17311 * 101.23147 * 10 9 7 37 37 H 1.09004 * 109.61080 * 280.22165 * 11 10 9 38 38 H 1.09000 * 109.42991 * 160.19190 * 11 10 9 39 39 H 1.08999 * 109.58745 * 148.72216 * 12 11 10 40 40 H 1.09001 * 109.58132 * 28.28682 * 12 11 10 41 41 H 1.09001 * 109.46939 * 60.00947 * 16 14 13 42 42 H 1.08996 * 109.47510 * 180.02562 * 16 14 13 43 43 H 0.96999 * 119.99429 * 359.97438 * 17 16 14 44 44 H 0.97002 * 120.00755 * 179.97438 * 21 20 18 45 45 H 1.09002 * 109.46244 * 210.72467 * 26 9 7 46 46 H 1.08998 * 109.46377 * 330.69115 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3520 1.5251 -0.0005 5 6 4.0452 2.7627 -0.0012 6 6 5.3626 2.3987 -0.0021 7 6 6.5304 3.3004 -0.0025 8 8 6.3717 4.5005 -0.1161 9 7 7.7726 2.7943 0.1285 10 6 8.9267 3.7037 -0.0015 11 6 10.0550 3.0561 -0.8107 12 6 9.4635 2.2877 -1.9752 13 8 9.2358 0.9448 -1.5684 14 6 8.0436 0.6141 -0.9567 15 1 7.2131 0.8911 -1.6060 16 6 8.0055 -0.8928 -0.6949 17 7 8.1184 -1.6124 -1.9661 18 6 8.1080 -2.9816 -1.9812 19 1 8.0162 -3.5311 -1.0560 20 6 8.2145 -3.6632 -3.1857 21 7 8.3260 -2.9936 -4.3132 22 14 8.1996 -5.5310 -3.2062 23 1 6.8017 -6.0135 -3.3421 24 1 9.0057 -6.0198 -4.3536 25 1 8.7796 -6.0447 -1.9393 26 6 7.9243 1.3743 0.3866 27 8 5.3813 1.0522 -0.0079 28 7 4.2639 0.5911 -0.0011 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.6294 3.7593 -0.0009 35 1 8.6073 4.6181 -0.5016 36 1 9.3006 3.9519 0.9918 37 1 10.6170 2.3734 -0.1733 38 1 10.7214 3.8314 -1.1884 39 1 10.1594 2.3025 -2.8140 40 1 8.5195 2.7445 -2.2725 41 1 8.8360 -1.1699 -0.0456 42 1 7.0638 -1.1541 -0.2122 43 1 8.2006 -1.1187 -2.7971 44 1 8.4007 -3.4699 -5.1549 45 1 8.8234 1.2070 0.9796 46 1 7.0552 1.0098 0.9342 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200982606.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:44 Heat of formation + Delta-G solvation = -17.201496 kcal Electronic energy + Delta-G solvation = -30987.269799 eV Core-core repulsion = 26689.614100 eV Total energy + Delta-G solvation = -4297.655698 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.12390 -40.64830 -39.13634 -38.68741 -35.61686 -34.81253 -33.64593 -33.31299 -31.94539 -31.31948 -30.89389 -28.83920 -26.91152 -25.55850 -24.42016 -23.57925 -23.26271 -22.49431 -21.29285 -20.99722 -20.31871 -18.49471 -18.04520 -17.32336 -17.10819 -16.86494 -16.46379 -16.13864 -16.09507 -15.78936 -15.01813 -14.84054 -14.64075 -14.30357 -14.05866 -13.75367 -13.57413 -13.30841 -13.12042 -13.06565 -12.92221 -12.62292 -12.34240 -12.12040 -12.07961 -11.83725 -11.45155 -11.36434 -11.30539 -10.95371 -10.78581 -10.75210 -10.56557 -10.24497 -10.05114 -9.98595 -9.66559 -9.46638 -9.40799 -8.81409 -8.72967 -6.82456 -5.67601 -2.95442 0.58260 1.97821 2.28937 2.44072 2.71550 3.00553 3.48285 3.53050 3.55030 3.91847 3.93700 4.29960 4.56806 4.62594 4.68842 4.70615 4.73010 4.80315 4.93149 4.95329 5.06838 5.08985 5.14530 5.31633 5.35154 5.42871 5.50404 5.51781 5.54791 5.59284 5.65578 5.73438 5.81103 5.90840 5.99269 6.08636 6.20148 6.34003 6.68008 6.77080 6.80389 6.90231 7.59304 7.76340 7.94560 7.99970 8.50590 9.62338 10.20790 10.56610 11.55340 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007244 B = 0.004661 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3864.207474 B = 6006.369828 C = 9411.737488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.283 6.283 4 C 0.202 3.798 5 C -0.151 4.151 6 C -0.069 4.069 7 C 0.602 3.398 8 O -0.514 6.514 9 N -0.592 5.592 10 C 0.113 3.887 11 C -0.166 4.166 12 C 0.071 3.929 13 O -0.364 6.364 14 C 0.090 3.910 15 H 0.050 0.950 16 C 0.167 3.833 17 N -0.724 5.724 18 C -0.235 4.235 19 H 0.070 0.930 20 C -0.014 4.014 21 N -0.932 5.932 22 Si 0.905 3.095 23 H -0.291 1.291 24 H -0.292 1.292 25 H -0.282 1.282 26 C 0.062 3.938 27 O 0.132 5.868 28 N -0.378 5.378 29 H 0.083 0.917 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.188 0.812 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.047 0.953 41 H 0.027 0.973 42 H 0.039 0.961 43 H 0.387 0.613 44 H 0.254 0.746 45 H 0.097 0.903 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.848 14.804 11.454 19.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.190 6.190 4 C 0.005 3.995 5 C -0.174 4.174 6 C -0.135 4.135 7 C 0.387 3.613 8 O -0.391 6.391 9 N -0.324 5.324 10 C -0.008 4.008 11 C -0.205 4.205 12 C -0.006 4.006 13 O -0.282 6.282 14 C 0.030 3.970 15 H 0.068 0.932 16 C 0.039 3.961 17 N -0.369 5.369 18 C -0.366 4.366 19 H 0.088 0.912 20 C -0.210 4.210 21 N -0.581 5.581 22 Si 0.736 3.264 23 H -0.219 1.219 24 H -0.219 1.219 25 H -0.208 1.208 26 C -0.061 4.061 27 O 0.065 5.935 28 N -0.099 5.099 29 H 0.102 0.898 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.206 0.794 35 H 0.112 0.888 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.110 0.890 40 H 0.065 0.935 41 H 0.044 0.956 42 H 0.056 0.944 43 H 0.221 0.779 44 H 0.063 0.937 45 H 0.115 0.885 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.073 14.014 11.437 19.423 hybrid contribution -0.419 -0.171 -0.302 0.544 sum -7.492 13.843 11.135 19.280 Atomic orbital electron populations 1.21790 0.92164 1.03299 1.03484 1.22883 0.95843 0.80304 1.02953 1.86184 1.12864 1.30561 1.89387 1.21816 0.86036 0.90267 1.01381 1.22121 0.89992 0.99239 1.06040 1.23902 0.96293 0.84920 1.08339 1.16694 0.81207 0.85968 0.77407 1.90847 1.84715 1.13189 1.50320 1.47847 1.05373 1.09880 1.69291 1.21873 0.85107 0.92723 1.01131 1.22464 0.97827 1.01157 0.99019 1.22171 0.99891 0.82790 0.95758 1.86465 1.37600 1.26759 1.77390 1.22317 0.87068 0.96674 0.90932 0.93226 1.20621 0.98611 0.85773 0.91127 1.42183 1.88493 1.03387 1.02795 1.19213 1.41883 0.82631 0.92887 0.91213 1.24707 1.03186 0.97662 0.95418 1.69670 1.57392 1.33996 0.97052 0.86216 0.77341 0.85900 0.76898 1.21878 1.21853 1.20781 1.22944 1.04598 0.78477 1.00114 1.85273 1.22461 1.18119 1.67697 1.74106 0.90600 1.22089 1.23142 0.89848 0.91495 0.91356 0.91077 0.91384 0.79426 0.88850 0.90986 0.89761 0.89336 0.89002 0.93471 0.95552 0.94391 0.77888 0.93656 0.88456 0.88539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 10.28 37.16 0.38 -0.77 16 2 C 0.06 0.59 6.38 37.16 0.24 0.83 16 3 O -0.28 -3.60 10.21 -18.89 -0.19 -3.79 16 4 C 0.20 2.80 8.00 -16.72 -0.13 2.67 16 5 C -0.15 -1.90 10.97 -38.77 -0.43 -2.33 16 6 C -0.07 -0.93 6.71 -36.36 -0.24 -1.17 16 7 C 0.60 8.08 7.62 -12.47 -0.10 7.99 16 8 O -0.51 -7.70 16.27 5.29 0.09 -7.61 16 9 N -0.59 -7.14 2.20 -173.92 -0.38 -7.52 16 10 C 0.11 1.11 6.08 -3.39 -0.02 1.09 16 11 C -0.17 -1.62 5.78 -27.37 -0.16 -1.78 16 12 C 0.07 0.93 6.37 36.42 0.23 1.16 16 13 O -0.36 -6.25 9.18 -26.51 -0.24 -6.49 16 14 C 0.09 1.50 2.07 -25.78 -0.05 1.45 16 15 H 0.05 0.90 7.36 -51.93 -0.38 0.52 16 16 C 0.17 3.38 5.95 -4.04 -0.02 3.35 16 17 N -0.72 -18.86 5.49 -59.91 -0.33 -19.19 16 18 C -0.23 -6.69 9.99 -15.06 -0.15 -6.84 16 19 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 20 C -0.01 -0.41 5.50 -17.44 -0.10 -0.50 16 21 N -0.93 -28.80 13.06 55.49 0.72 -28.07 16 22 Si 0.91 22.72 29.55 -169.99 -5.02 17.70 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 24 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 26 C 0.06 0.79 4.42 -3.83 -0.02 0.78 16 27 O 0.13 1.96 6.78 15.49 0.11 2.06 16 28 N -0.38 -5.82 11.50 30.47 0.35 -5.47 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.19 1.93 8.06 -52.49 -0.42 1.50 16 35 H 0.09 0.95 7.07 -51.93 -0.37 0.58 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.86 8.01 -51.93 -0.42 0.44 16 38 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.05 0.64 7.39 -51.93 -0.38 0.25 16 41 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.39 10.81 7.53 -40.82 -0.31 10.50 16 44 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 45 H 0.10 1.10 8.12 -51.93 -0.42 0.68 16 46 H 0.10 1.19 5.38 -51.93 -0.28 0.91 16 LS Contribution 378.17 15.07 5.70 5.70 Total: -1.00 -33.93 378.17 -6.53 -40.46 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -6.75 Total: 6.29 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: -0.57 Total: 5.93 kcal Atomic # 7 Polarization: -60.61 SS G_CDS: 0.36 Total: -60.25 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -0.25 Total: -15.83 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.93 -6.53 -40.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200982606.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.255 kcal (2) G-P(sol) polarization free energy of solvation -33.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds