Wall clock time and date at job start Sat Apr 11 2020 05:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 114.00305 * 2 1 4 4 C 1.50699 * 109.47267 * 180.02562 * 3 2 1 5 5 C 1.35308 * 126.66621 * 90.00069 * 4 3 2 6 6 C 1.42268 * 103.92335 * 180.02562 * 5 4 3 7 7 C 1.48340 * 126.93873 * 180.02562 * 6 5 4 8 8 O 1.21493 * 120.00164 * 6.42875 * 7 6 5 9 9 N 1.34774 * 119.99861 * 186.43248 * 7 6 5 10 10 C 1.47508 * 118.75570 * 176.66141 * 9 7 6 11 11 C 1.53576 * 111.03012 * 138.34808 * 10 9 7 12 12 C 1.51539 * 109.57483 * 320.01877 * 11 10 9 13 13 O 1.42155 * 108.74792 * 91.40740 * 12 11 10 14 14 C 1.38015 * 119.43825 * 272.75882 * 13 12 11 15 15 H 1.09002 * 109.47446 * 303.43503 * 14 13 12 16 16 C 1.53001 * 109.47159 * 183.43473 * 14 13 12 17 17 N 1.46507 * 109.46948 * 64.99365 * 16 14 13 18 18 C 1.36930 * 119.99973 * 179.72438 * 17 16 14 19 19 H 1.08003 * 120.00201 * 0.27569 * 18 17 16 20 20 C 1.38813 * 120.00353 * 180.27340 * 18 17 16 21 21 N 1.31611 * 120.00331 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 119.99568 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.47152 * 89.99609 * 22 20 18 24 24 H 1.48500 * 109.46989 * 209.99808 * 22 20 18 25 25 H 1.48497 * 109.47041 * 329.99732 * 22 20 18 26 26 C 1.45121 * 118.75904 * 356.63915 * 9 7 6 27 27 N 1.30985 * 106.12438 * 0.26253 * 6 5 4 28 28 O 1.20906 * 111.43519 * 359.53384 * 27 6 5 29 29 H 1.09001 * 109.47376 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46595 * 299.99584 * 1 2 3 31 31 H 1.08998 * 109.47376 * 59.99252 * 1 2 3 32 32 H 1.09002 * 109.46764 * 60.00544 * 3 2 1 33 33 H 1.08999 * 109.47152 * 300.00578 * 3 2 1 34 34 H 1.08007 * 128.03856 * 359.97438 * 5 4 3 35 35 H 1.09005 * 109.16633 * 258.74495 * 10 9 7 36 36 H 1.08997 * 109.16746 * 17.94459 * 10 9 7 37 37 H 1.08998 * 109.45266 * 80.05403 * 11 10 9 38 38 H 1.09000 * 109.44907 * 199.99055 * 11 10 9 39 39 H 1.09004 * 109.58421 * 211.18078 * 12 11 10 40 40 H 1.08989 * 109.59489 * 331.62302 * 12 11 10 41 41 H 1.09001 * 109.47293 * 304.99464 * 16 14 13 42 42 H 1.09004 * 109.47451 * 184.99096 * 16 14 13 43 43 H 0.96993 * 119.99621 * 0.02562 * 17 16 14 44 44 H 0.96998 * 120.00092 * 179.97438 * 21 20 18 45 45 H 1.09003 * 109.46170 * 149.28604 * 26 9 7 46 46 H 1.09003 * 109.45947 * 29.32358 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.3176 1.1228 -1.0863 6 6 5.6258 1.0184 -0.5369 7 6 6.9020 0.9177 -1.2862 8 8 6.9075 1.0365 -2.4953 9 7 8.0554 0.6944 -0.6258 10 6 9.2972 0.5248 -1.4036 11 6 10.4681 1.2653 -0.7409 12 6 9.9880 2.5999 -0.2073 13 8 9.5734 2.4301 1.1418 14 6 8.2762 2.0419 1.4091 15 1 7.5839 2.7503 0.9541 16 6 8.0542 2.0125 2.9226 17 7 8.1711 3.3705 3.4598 18 6 8.0042 3.5932 4.8005 19 1 7.7908 2.7670 5.4627 20 6 8.1092 4.8806 5.3088 21 7 7.9483 5.0947 6.5973 22 14 8.4776 6.3096 4.1634 23 1 7.2031 6.8800 3.6577 24 1 9.2292 7.3555 4.9027 25 1 9.2934 5.8293 3.0193 26 6 8.0288 0.6303 0.8238 27 7 5.4753 1.0241 0.7643 28 8 4.3107 1.1224 1.0740 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.6887 1.8463 0.8901 33 1 1.6886 1.8464 -0.8899 34 1 4.0331 1.1451 -2.1280 35 1 9.5362 -0.5367 -1.4693 36 1 9.1468 0.9196 -2.4084 37 1 10.8587 0.6650 0.0807 38 1 11.2558 1.4304 -1.4760 39 1 10.8008 3.3248 -0.2514 40 1 9.1483 2.9523 -0.8061 41 1 8.8039 1.3722 3.3874 42 1 7.0594 1.6216 3.1365 43 1 8.3623 4.1125 2.8651 44 1 8.0221 5.9943 6.9525 45 1 8.8074 -0.0486 1.1716 46 1 7.0558 0.2660 1.1534 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201584898.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:46 Heat of formation + Delta-G solvation = -12.966547 kcal Electronic energy + Delta-G solvation = -30761.956158 eV Core-core repulsion = 26464.484101 eV Total energy + Delta-G solvation = -4297.472057 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -45.29716 -40.65837 -38.68336 -38.37095 -35.59440 -35.05601 -34.28483 -33.33222 -32.55601 -31.17864 -29.12753 -28.17715 -27.05589 -26.06246 -25.69695 -24.36462 -22.96802 -22.22951 -21.29648 -21.05128 -19.49831 -18.12897 -17.83545 -17.66358 -17.31071 -16.74999 -16.61395 -16.49482 -16.23538 -15.80405 -15.46211 -14.92185 -14.80983 -14.32356 -14.04127 -13.95581 -13.61764 -13.44948 -13.29547 -12.94537 -12.77868 -12.53028 -12.41090 -12.34250 -12.11597 -11.96635 -11.50060 -11.32111 -11.09353 -10.83437 -10.82545 -10.66886 -10.54560 -10.28453 -10.21609 -10.05244 -9.85495 -9.54762 -9.52787 -8.83929 -8.73370 -7.14765 -5.69921 -3.03998 0.85825 1.30915 2.45645 2.62594 2.89059 3.43292 3.49459 3.50416 3.54693 3.64672 3.83355 4.12121 4.52746 4.59903 4.66085 4.67032 4.72651 4.75820 4.88574 4.92713 4.96152 4.96480 5.04202 5.14154 5.19906 5.27223 5.29136 5.43538 5.49888 5.55940 5.57020 5.60775 5.72439 5.85234 5.90971 5.99978 6.04250 6.25389 6.54358 6.61750 6.69217 6.97474 7.66290 7.83601 7.90477 8.06122 8.49091 9.28723 10.01446 10.22334 11.48630 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008277 B = 0.004207 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3382.075465 B = 6654.656201 C = 9294.066666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.143 3.857 4 C -0.035 4.035 5 C -0.157 4.157 6 C -0.034 4.034 7 C 0.595 3.405 8 O -0.528 6.528 9 N -0.592 5.592 10 C 0.110 3.890 11 C -0.165 4.165 12 C 0.071 3.929 13 O -0.371 6.371 14 C 0.091 3.909 15 H 0.045 0.955 16 C 0.173 3.827 17 N -0.750 5.750 18 C -0.238 4.238 19 H 0.091 0.909 20 C 0.004 3.996 21 N -0.936 5.936 22 Si 0.881 3.119 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.275 1.275 26 C 0.056 3.944 27 N -0.305 5.305 28 O 0.137 5.863 29 H 0.091 0.909 30 H 0.048 0.952 31 H 0.045 0.955 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.182 0.818 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.047 0.953 41 H 0.035 0.965 42 H 0.049 0.951 43 H 0.363 0.637 44 H 0.258 0.742 45 H 0.089 0.911 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.449 -11.402 -19.783 24.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C 0.066 3.934 4 C -0.098 4.098 5 C -0.179 4.179 6 C -0.192 4.192 7 C 0.381 3.619 8 O -0.404 6.404 9 N -0.325 5.325 10 C -0.011 4.011 11 C -0.203 4.203 12 C -0.006 4.006 13 O -0.289 6.289 14 C 0.030 3.970 15 H 0.063 0.937 16 C 0.045 3.955 17 N -0.395 5.395 18 C -0.368 4.368 19 H 0.109 0.891 20 C -0.191 4.191 21 N -0.584 5.584 22 Si 0.711 3.289 23 H -0.213 1.213 24 H -0.218 1.218 25 H -0.201 1.201 26 C -0.068 4.068 27 N -0.005 5.005 28 O 0.059 5.941 29 H 0.109 0.891 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.100 0.900 33 H 0.107 0.893 34 H 0.199 0.801 35 H 0.089 0.911 36 H 0.112 0.888 37 H 0.102 0.898 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.065 0.935 41 H 0.053 0.947 42 H 0.066 0.934 43 H 0.195 0.805 44 H 0.068 0.932 45 H 0.108 0.892 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.296 -11.625 -19.069 23.824 hybrid contribution -0.377 1.277 -1.657 2.126 sum -8.673 -10.347 -20.725 24.735 Atomic orbital electron populations 1.22824 0.79671 1.03446 1.00539 1.87966 1.20578 1.26286 1.95594 1.20677 0.83080 0.86195 1.03468 1.23912 0.95080 1.05027 0.85748 1.22396 0.89629 1.04493 1.01389 1.23402 0.96585 1.08870 0.90309 1.17076 0.81781 0.76849 0.86154 1.90766 1.85983 1.50725 1.12882 1.47807 1.07213 1.69710 1.07723 1.21927 0.82575 1.00685 0.95905 1.22491 0.97584 0.98386 1.01835 1.22162 0.99191 0.95817 0.83417 1.86432 1.29349 1.87666 1.25491 1.22286 0.83885 0.92767 0.98023 0.93701 1.20583 0.99061 0.88988 0.86881 1.42568 1.87491 1.03079 1.06409 1.19058 1.40376 0.94650 0.82739 0.89131 1.24619 1.01989 0.96944 0.95539 1.69696 1.57010 1.20758 1.10965 0.86578 0.78112 0.83400 0.80784 1.21283 1.21760 1.20068 1.23134 1.05790 0.99955 0.77924 1.74399 0.96855 1.14206 1.15026 1.84888 1.11616 1.64312 1.33280 0.89068 0.93319 0.93590 0.89965 0.89328 0.80108 0.91148 0.88831 0.89819 0.89420 0.89138 0.93486 0.94721 0.93372 0.80462 0.93161 0.89227 0.86527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -3.35 10.69 -35.23 -0.38 -3.73 16 3 C 0.14 1.05 6.50 36.01 0.23 1.29 16 4 C -0.03 -0.37 7.10 -35.35 -0.25 -0.62 16 5 C -0.16 -1.78 10.93 -39.08 -0.43 -2.20 16 6 C -0.03 -0.47 6.84 -82.52 -0.56 -1.04 16 7 C 0.60 8.75 7.66 -12.10 -0.09 8.66 16 8 O -0.53 -8.55 16.25 5.37 0.09 -8.47 16 9 N -0.59 -7.95 2.19 -173.39 -0.38 -8.33 16 10 C 0.11 1.21 6.17 -3.19 -0.02 1.20 16 11 C -0.16 -1.73 5.79 -27.17 -0.16 -1.88 16 12 C 0.07 0.96 6.38 36.42 0.23 1.19 16 13 O -0.37 -6.48 9.38 -26.53 -0.25 -6.73 16 14 C 0.09 1.56 2.32 -25.78 -0.06 1.50 16 15 H 0.05 0.84 8.10 -51.93 -0.42 0.42 16 16 C 0.17 3.54 5.92 -4.04 -0.02 3.51 16 17 N -0.75 -18.92 5.34 -59.90 -0.32 -19.24 16 18 C -0.24 -6.98 10.47 -15.06 -0.16 -7.14 16 19 H 0.09 2.80 8.06 -52.48 -0.42 2.38 16 20 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 21 N -0.94 -30.01 13.97 55.49 0.78 -29.23 16 22 Si 0.88 22.99 27.74 -169.99 -4.71 18.28 16 23 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 24 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 25 H -0.27 -6.92 6.52 56.52 0.37 -6.55 16 26 C 0.06 0.79 4.47 -3.83 -0.02 0.77 16 27 N -0.31 -4.41 8.18 33.29 0.27 -4.14 16 28 O 0.14 1.82 11.18 17.24 0.19 2.01 16 29 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.05 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.18 1.66 8.06 -52.48 -0.42 1.24 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.09 1.06 6.96 -51.93 -0.36 0.70 16 37 H 0.08 0.91 8.01 -51.93 -0.42 0.50 16 38 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.05 0.67 7.40 -51.94 -0.38 0.28 16 41 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.36 9.18 5.52 -40.82 -0.23 8.95 16 44 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 45 H 0.09 1.16 8.11 -51.93 -0.42 0.74 16 46 H 0.12 1.68 4.68 -52.48 -0.25 1.44 16 LS Contribution 377.34 15.07 5.69 5.69 Total: -1.00 -36.22 377.34 -6.03 -42.25 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -6.72 Total: 5.09 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: -0.29 Total: 6.55 kcal Atomic # 7 Polarization: -61.29 SS G_CDS: 0.35 Total: -60.94 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -0.35 Total: -16.92 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -4.71 Total: 18.28 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.22 -6.03 -42.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201584898.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.281 kcal (2) G-P(sol) polarization free energy of solvation -36.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds