Wall clock time and date at job start Sat Apr 11 2020 05:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 114.00305 * 2 1 4 4 C 1.50699 * 109.47267 * 180.02562 * 3 2 1 5 5 C 1.35308 * 126.66621 * 90.00069 * 4 3 2 6 6 C 1.42268 * 103.92335 * 180.02562 * 5 4 3 7 7 C 1.48340 * 126.93873 * 180.02562 * 6 5 4 8 8 O 1.21493 * 120.00164 * 6.42875 * 7 6 5 9 9 N 1.34774 * 119.99861 * 186.43248 * 7 6 5 10 10 C 1.47508 * 118.75570 * 176.66141 * 9 7 6 11 11 C 1.53576 * 111.03012 * 138.34808 * 10 9 7 12 12 C 1.51539 * 109.57483 * 320.01877 * 11 10 9 13 13 O 1.42155 * 108.74792 * 91.40740 * 12 11 10 14 14 C 1.38015 * 119.43825 * 272.75882 * 13 12 11 15 15 H 1.09002 * 109.47446 * 303.43503 * 14 13 12 16 16 C 1.53001 * 109.47159 * 183.43473 * 14 13 12 17 17 N 1.46507 * 109.46948 * 64.99365 * 16 14 13 18 18 C 1.36930 * 119.99973 * 179.72438 * 17 16 14 19 19 H 1.08003 * 120.00201 * 0.27569 * 18 17 16 20 20 C 1.38813 * 120.00353 * 180.27340 * 18 17 16 21 21 N 1.31611 * 120.00331 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 119.99568 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.47152 * 89.99609 * 22 20 18 24 24 H 1.48500 * 109.46989 * 209.99808 * 22 20 18 25 25 H 1.48497 * 109.47041 * 329.99732 * 22 20 18 26 26 C 1.45121 * 118.75904 * 356.63915 * 9 7 6 27 27 N 1.30985 * 106.12438 * 0.26253 * 6 5 4 28 28 O 1.20906 * 111.43519 * 359.53384 * 27 6 5 29 29 H 1.09001 * 109.47376 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46595 * 299.99584 * 1 2 3 31 31 H 1.08998 * 109.47376 * 59.99252 * 1 2 3 32 32 H 1.09002 * 109.46764 * 60.00544 * 3 2 1 33 33 H 1.08999 * 109.47152 * 300.00578 * 3 2 1 34 34 H 1.08007 * 128.03856 * 359.97438 * 5 4 3 35 35 H 1.09005 * 109.16633 * 258.74495 * 10 9 7 36 36 H 1.08997 * 109.16746 * 17.94459 * 10 9 7 37 37 H 1.08998 * 109.45266 * 80.05403 * 11 10 9 38 38 H 1.09000 * 109.44907 * 199.99055 * 11 10 9 39 39 H 1.09004 * 109.58421 * 211.18078 * 12 11 10 40 40 H 1.08989 * 109.59489 * 331.62302 * 12 11 10 41 41 H 1.09001 * 109.47293 * 304.99464 * 16 14 13 42 42 H 1.09004 * 109.47451 * 184.99096 * 16 14 13 43 43 H 0.96993 * 119.99621 * 0.02562 * 17 16 14 44 44 H 0.96998 * 120.00092 * 179.97438 * 21 20 18 45 45 H 1.09003 * 109.46170 * 149.28604 * 26 9 7 46 46 H 1.09003 * 109.45947 * 29.32358 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.3176 1.1228 -1.0863 6 6 5.6258 1.0184 -0.5369 7 6 6.9020 0.9177 -1.2862 8 8 6.9075 1.0365 -2.4953 9 7 8.0554 0.6944 -0.6258 10 6 9.2972 0.5248 -1.4036 11 6 10.4681 1.2653 -0.7409 12 6 9.9880 2.5999 -0.2073 13 8 9.5734 2.4301 1.1418 14 6 8.2762 2.0419 1.4091 15 1 7.5839 2.7503 0.9541 16 6 8.0542 2.0125 2.9226 17 7 8.1711 3.3705 3.4598 18 6 8.0042 3.5932 4.8005 19 1 7.7908 2.7670 5.4627 20 6 8.1092 4.8806 5.3088 21 7 7.9483 5.0947 6.5973 22 14 8.4776 6.3096 4.1634 23 1 7.2031 6.8800 3.6577 24 1 9.2292 7.3555 4.9027 25 1 9.2934 5.8293 3.0193 26 6 8.0288 0.6303 0.8238 27 7 5.4753 1.0241 0.7643 28 8 4.3107 1.1224 1.0740 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.6887 1.8463 0.8901 33 1 1.6886 1.8464 -0.8899 34 1 4.0331 1.1451 -2.1280 35 1 9.5362 -0.5367 -1.4693 36 1 9.1468 0.9196 -2.4084 37 1 10.8587 0.6650 0.0807 38 1 11.2558 1.4304 -1.4760 39 1 10.8008 3.3248 -0.2514 40 1 9.1483 2.9523 -0.8061 41 1 8.8039 1.3722 3.3874 42 1 7.0594 1.6216 3.1365 43 1 8.3623 4.1125 2.8651 44 1 8.0221 5.9943 6.9525 45 1 8.8074 -0.0486 1.1716 46 1 7.0558 0.2660 1.1534 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201584898.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:46 Heat of formation + Delta-G solvation = -39.066747 kcal Electronic energy + Delta-G solvation = -30763.087947 eV Core-core repulsion = 26464.484101 eV Total energy + Delta-G solvation = -4298.603847 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -46.27008 -41.78541 -39.91448 -38.92142 -36.95455 -36.54749 -35.40400 -34.51866 -33.70430 -33.02178 -30.60021 -28.78125 -28.12783 -27.25651 -26.51537 -25.55180 -24.25457 -23.69576 -22.72341 -22.13794 -20.49391 -19.81518 -19.06355 -18.84427 -18.34065 -17.87597 -17.61932 -17.22972 -17.00010 -16.72748 -16.64500 -16.31022 -16.09836 -15.81320 -15.21188 -15.00469 -14.89308 -14.82310 -14.57075 -14.05258 -13.90151 -13.85942 -13.70573 -13.55532 -13.09445 -12.93297 -12.85827 -12.52133 -12.41988 -12.25884 -12.11593 -11.99959 -11.82722 -11.73944 -11.64891 -11.40445 -11.02997 -10.75146 -10.72742 -10.70729 -9.87656 -9.31389 -8.02982 -5.35696 -0.13232 0.42402 1.35213 1.37615 1.45977 1.48135 1.80162 1.82260 2.47176 2.60229 2.62106 2.93780 3.28268 3.29644 3.44355 3.69957 3.75135 3.79643 3.90559 3.92234 3.99001 4.03024 4.16209 4.23780 4.31876 4.37938 4.39471 4.49322 4.57773 4.62530 4.65219 4.69880 4.75674 4.79586 4.86342 4.94455 5.01181 5.04630 5.12821 5.25859 5.73868 5.88254 6.07937 6.20348 6.58355 6.61922 6.91177 7.05913 7.81588 8.01538 9.18476 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008277 B = 0.004207 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3382.075465 B = 6654.656201 C = 9294.066666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.413 6.413 3 C 0.142 3.858 4 C -0.026 4.026 5 C -0.160 4.160 6 C -0.051 4.051 7 C 0.592 3.408 8 O -0.547 6.547 9 N -0.590 5.590 10 C 0.106 3.894 11 C -0.153 4.153 12 C 0.064 3.936 13 O -0.396 6.396 14 C 0.106 3.894 15 H 0.028 0.972 16 C 0.170 3.830 17 N -0.753 5.753 18 C -0.231 4.231 19 H 0.062 0.938 20 C -0.059 4.059 21 N -0.981 5.981 22 Si 0.950 3.050 23 H -0.278 1.278 24 H -0.291 1.291 25 H -0.260 1.260 26 C 0.068 3.932 27 N -0.328 5.328 28 O 0.122 5.878 29 H 0.096 0.904 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.120 0.880 34 H 0.201 0.799 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.119 0.881 39 H 0.104 0.896 40 H 0.037 0.963 41 H 0.034 0.966 42 H 0.050 0.950 43 H 0.363 0.637 44 H 0.258 0.742 45 H 0.105 0.895 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.508 -11.504 -22.258 26.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.333 6.333 3 C 0.065 3.935 4 C -0.089 4.089 5 C -0.183 4.183 6 C -0.209 4.209 7 C 0.379 3.621 8 O -0.425 6.425 9 N -0.321 5.321 10 C -0.014 4.014 11 C -0.191 4.191 12 C -0.012 4.012 13 O -0.315 6.315 14 C 0.046 3.954 15 H 0.046 0.954 16 C 0.044 3.956 17 N -0.399 5.399 18 C -0.362 4.362 19 H 0.080 0.920 20 C -0.250 4.250 21 N -0.632 5.632 22 Si 0.777 3.223 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.185 1.185 26 C -0.056 4.056 27 N -0.029 5.029 28 O 0.046 5.954 29 H 0.114 0.886 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.112 0.888 33 H 0.137 0.863 34 H 0.218 0.782 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.102 0.898 38 H 0.137 0.863 39 H 0.122 0.878 40 H 0.055 0.945 41 H 0.052 0.948 42 H 0.068 0.932 43 H 0.196 0.804 44 H 0.067 0.933 45 H 0.123 0.877 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -8.355 -11.765 -21.579 25.959 hybrid contribution -0.417 1.228 -0.882 1.568 sum -8.772 -10.537 -22.461 26.315 Atomic orbital electron populations 1.23013 0.77907 1.04268 1.01784 1.87914 1.22517 1.26973 1.95879 1.20957 0.80754 0.86230 1.05555 1.24560 0.96412 1.03196 0.84721 1.22685 0.88617 1.04462 1.02515 1.23588 0.97321 1.09422 0.90532 1.17237 0.82306 0.76565 0.86034 1.90744 1.86354 1.51815 1.13540 1.47882 1.07837 1.69046 1.07363 1.22151 0.81682 1.02152 0.95436 1.22426 0.97944 0.96307 1.02448 1.22412 0.99164 0.98065 0.81514 1.86365 1.28978 1.88088 1.28070 1.21918 0.83774 0.94297 0.95415 0.95403 1.20687 0.98991 0.86549 0.89396 1.42579 1.87341 1.05053 1.04885 1.19052 1.39036 0.93921 0.84214 0.92016 1.25394 1.02673 0.99834 0.97118 1.69861 1.58837 1.21401 1.13055 0.85481 0.78251 0.79598 0.78947 1.20446 1.21742 1.18529 1.22910 1.06263 0.98027 0.78412 1.74379 0.97609 1.15437 1.15462 1.84841 1.11688 1.64450 1.34452 0.88569 0.92544 0.91847 0.88792 0.86260 0.78157 0.89017 0.88995 0.89824 0.86252 0.87837 0.94468 0.94810 0.93216 0.80387 0.93262 0.87698 0.86734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.46 16 2 O -0.41 -6.56 10.69 -148.98 -1.59 -8.15 16 3 C 0.14 1.82 6.50 71.24 0.46 2.28 16 4 C -0.03 -0.53 7.10 25.01 0.18 -0.35 16 5 C -0.16 -3.48 10.93 22.60 0.25 -3.23 16 6 C -0.05 -1.41 6.84 42.96 0.29 -1.12 16 7 C 0.59 16.95 7.66 86.93 0.67 17.62 16 8 O -0.55 -17.23 16.25 -3.69 -0.06 -17.29 16 9 N -0.59 -15.05 2.19 -820.79 -1.80 -16.85 16 10 C 0.11 2.08 6.17 86.38 0.53 2.61 16 11 C -0.15 -2.77 5.79 30.31 0.18 -2.59 16 12 C 0.06 1.62 6.38 71.50 0.46 2.07 16 13 O -0.40 -13.34 9.38 -117.86 -1.11 -14.44 16 14 C 0.11 3.61 2.32 31.21 0.07 3.68 16 15 H 0.03 1.05 8.10 -2.39 -0.02 1.03 16 16 C 0.17 7.01 5.92 86.38 0.51 7.52 16 17 N -0.75 -38.04 5.34 -343.43 -1.83 -39.88 16 18 C -0.23 -13.79 10.47 84.03 0.88 -12.91 16 19 H 0.06 3.96 8.06 -2.91 -0.02 3.94 16 20 C -0.06 -3.57 5.50 84.86 0.47 -3.10 16 21 N -0.98 -64.12 13.97 21.65 0.30 -63.82 16 22 Si 0.95 47.65 27.74 68.60 1.90 49.56 16 23 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 24 H -0.29 -14.52 7.11 99.48 0.71 -13.81 16 25 H -0.26 -12.30 6.52 99.48 0.65 -11.65 16 26 C 0.07 1.86 4.47 87.25 0.39 2.25 16 27 N -0.33 -9.50 8.18 -49.52 -0.41 -9.91 16 28 O 0.12 3.24 11.18 71.88 0.80 4.05 16 29 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.38 8.14 -2.38 -0.02 0.36 16 31 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.20 3.35 8.06 -2.91 -0.02 3.33 16 35 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 36 H 0.09 1.88 6.96 -2.39 -0.02 1.87 16 37 H 0.08 1.57 8.01 -2.39 -0.02 1.55 16 38 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.10 2.31 8.14 -2.38 -0.02 2.29 16 40 H 0.04 1.01 7.40 -2.39 -0.02 0.99 16 41 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.36 18.11 5.52 -92.71 -0.51 17.60 16 44 H 0.26 16.04 8.31 -92.71 -0.77 15.27 16 45 H 0.10 2.54 8.11 -2.39 -0.02 2.52 16 46 H 0.12 3.27 4.68 -3.48 -0.02 3.26 16 Total: -1.00 -79.10 377.34 3.22 -75.87 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: 0.43 Total: 24.66 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: 6.58 Total: 16.20 kcal Atomic # 7 Polarization: -126.72 SS G_CDS: -3.74 Total: -130.46 kcal Atomic # 8 Polarization: -33.88 SS G_CDS: -1.95 Total: -35.83 kcal Atomic # 14 Polarization: 47.65 SS G_CDS: 1.90 Total: 49.56 kcal Total: -79.10 3.22 -75.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201584898.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.805 kcal (2) G-P(sol) polarization free energy of solvation -79.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds