Wall clock time and date at job start Sat Apr 11 2020 05:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47579 * 2 1 4 4 O 1.42906 * 109.47183 * 240.00263 * 2 1 3 5 5 C 1.53000 * 109.47450 * 120.00190 * 2 1 3 6 6 H 1.09000 * 109.46897 * 295.00482 * 5 2 1 7 7 O 1.42907 * 109.46738 * 54.99726 * 5 2 1 8 8 C 1.52998 * 109.47441 * 174.99758 * 5 2 1 9 9 N 1.46496 * 109.46991 * 179.97438 * 8 5 2 10 10 C 1.34776 * 119.99988 * 180.02562 * 9 8 5 11 11 O 1.21589 * 120.00100 * 0.02562 * 10 9 8 12 12 N 1.34775 * 120.00018 * 179.97438 * 10 9 8 13 13 C 1.39594 * 119.99902 * 179.97438 * 12 10 9 14 14 N 1.32268 * 119.72347 * 0.29564 * 13 12 10 15 15 C 1.31970 * 121.68397 * 180.28583 * 14 13 12 16 16 C 1.38074 * 120.95656 * 359.70589 * 15 14 13 17 17 C 1.38794 * 119.35179 * 359.97438 * 16 15 14 18 18 C 1.38781 * 118.44773 * 359.97438 * 17 16 15 19 19 O 1.35983 * 120.49767 * 179.97438 * 18 17 16 20 20 C 1.42906 * 116.99537 * 0.02562 * 19 18 17 21 21 C 1.53006 * 109.46748 * 179.97438 * 20 19 18 22 22 C 1.50699 * 109.46866 * 179.97438 * 21 20 19 23 23 H 1.08003 * 119.99962 * 359.97438 * 22 21 20 24 24 C 1.37874 * 120.00270 * 180.02562 * 22 21 20 25 25 N 1.31522 * 119.99834 * 359.97438 * 24 22 21 26 26 Si 1.86793 * 120.00496 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47325 * 59.99531 * 26 24 22 28 28 H 1.48496 * 109.47425 * 179.97438 * 26 24 22 29 29 H 1.48505 * 109.47183 * 299.99726 * 26 24 22 30 30 H 1.08997 * 109.47190 * 299.99863 * 1 2 3 31 31 H 1.08998 * 109.47094 * 59.99541 * 1 2 3 32 32 H 1.08997 * 109.47265 * 179.97438 * 1 2 3 33 33 H 0.96702 * 113.99782 * 300.00332 * 4 2 1 34 34 H 0.96696 * 114.00108 * 60.00218 * 7 5 2 35 35 H 1.08999 * 109.46870 * 60.00046 * 8 5 2 36 36 H 1.08995 * 109.46965 * 300.00283 * 8 5 2 37 37 H 0.97000 * 120.00201 * 0.02562 * 9 8 5 38 38 H 0.97000 * 120.00172 * 0.02562 * 12 10 9 39 39 H 1.08000 * 119.52522 * 179.72561 * 15 14 13 40 40 H 1.07998 * 120.32407 * 180.02562 * 16 15 14 41 41 H 1.07993 * 120.77632 * 180.02562 * 17 16 15 42 42 H 1.09000 * 109.47490 * 59.99651 * 20 19 18 43 43 H 1.09001 * 109.47232 * 299.99005 * 20 19 18 44 44 H 1.08993 * 109.46955 * 299.99993 * 21 20 19 45 45 H 1.09000 * 109.47050 * 59.99822 * 21 20 19 46 46 H 0.96992 * 120.00032 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.0400 -0.7213 1.2492 6 1 1.7516 -0.1584 2.1369 7 8 1.4702 -2.0304 1.3093 8 6 3.5648 -0.8311 1.1879 9 7 4.0532 -1.5212 2.3843 10 6 5.3741 -1.7327 2.5483 11 8 6.1605 -1.3503 1.7035 12 7 5.8234 -2.3671 3.6492 13 6 7.1915 -2.5866 3.8188 14 7 8.0425 -2.1645 2.8984 15 6 9.3428 -2.3561 3.0166 16 6 9.8681 -3.0041 4.1169 17 6 9.0130 -3.4587 5.1112 18 6 7.6504 -3.2424 4.9610 19 8 6.7750 -3.6707 5.9094 20 6 7.3256 -4.3410 7.0450 21 6 6.1968 -4.7448 7.9957 22 6 6.7773 -5.4522 9.1930 23 1 7.8446 -5.5994 9.2681 24 6 5.9460 -5.9124 10.1920 25 7 4.6462 -5.7335 10.1002 26 14 6.6656 -6.7886 11.6764 27 1 7.6040 -5.8790 12.3813 28 1 5.5700 -7.1806 12.5990 29 1 7.3949 -8.0025 11.2292 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.7209 -1.5952 -1.2330 34 1 1.6857 -2.5885 0.5496 35 1 3.9994 0.1674 1.1420 36 1 3.8531 -1.3940 0.3001 37 1 3.4259 -1.8259 3.0585 38 1 5.1961 -2.6718 4.3234 39 1 10.0058 -2.0006 2.2417 40 1 10.9340 -3.1551 4.2034 41 1 9.3990 -3.9680 5.9817 42 1 8.0145 -3.6733 7.5624 43 1 7.8608 -5.2320 6.7168 44 1 5.6619 -3.8536 8.3238 45 1 5.5076 -5.4123 7.4785 46 1 4.0613 -6.0569 10.8032 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203676899.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:10 Heat of formation + Delta-G solvation = -127.866055 kcal Electronic energy + Delta-G solvation = -28804.800346 eV Core-core repulsion = 24502.345872 eV Total energy + Delta-G solvation = -4302.454474 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.90323 -39.92048 -39.09134 -37.76081 -36.18703 -34.86398 -34.33632 -33.46891 -31.74286 -31.51991 -30.60539 -29.43444 -28.40407 -25.41705 -24.42427 -23.23316 -22.67345 -21.92933 -21.16534 -20.52142 -18.75603 -18.22453 -18.02624 -17.46254 -16.94204 -16.26126 -16.17358 -15.89419 -15.85729 -15.37188 -15.16569 -14.74817 -14.63603 -14.58526 -14.31624 -13.98200 -13.87112 -13.61467 -13.13517 -12.81755 -12.73166 -12.58308 -12.39727 -12.23226 -11.99306 -11.90572 -11.27649 -11.21497 -11.07400 -10.97577 -10.68752 -10.68571 -10.42190 -10.15843 -10.03483 -9.77801 -9.42577 -9.26638 -9.08458 -9.04403 -8.51906 -7.60624 -6.17818 -4.22822 1.29855 1.49116 2.41701 3.23504 3.23832 3.28530 3.29632 3.55505 3.67987 3.73861 3.98245 4.08736 4.23948 4.33685 4.34402 4.57564 4.69672 4.80310 4.85170 4.98776 5.11026 5.18915 5.24440 5.28091 5.36882 5.46986 5.50587 5.62151 5.71481 5.87369 5.91291 6.08087 6.20985 6.30044 6.39884 6.55388 6.60065 6.85498 6.95822 7.10272 7.36107 7.52991 7.64085 7.74734 7.88456 8.14553 8.28047 8.64642 8.82223 9.42032 10.93594 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010452 B = 0.002329 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2678.161111 B =12018.301201 C =14547.382597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.075 3.925 3 H 0.110 0.890 4 O -0.556 6.556 5 C 0.062 3.938 6 H 0.115 0.885 7 O -0.551 6.551 8 C 0.114 3.886 9 N -0.743 5.743 10 C 0.696 3.304 11 O -0.536 6.536 12 N -0.661 5.661 13 C 0.347 3.653 14 N -0.442 5.442 15 C 0.076 3.924 16 C -0.163 4.163 17 C -0.147 4.147 18 C 0.065 3.935 19 O -0.316 6.316 20 C 0.066 3.934 21 C 0.027 3.973 22 C -0.529 4.529 23 H 0.058 0.942 24 C 0.061 3.939 25 N -0.889 5.889 26 Si 0.899 3.101 27 H -0.275 1.275 28 H -0.285 1.285 29 H -0.275 1.275 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.373 0.627 34 H 0.374 0.626 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.401 0.599 38 H 0.421 0.579 39 H 0.156 0.844 40 H 0.134 0.866 41 H 0.145 0.855 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.028 0.972 45 H 0.028 0.972 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.596 9.654 -18.835 21.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.015 3.985 3 H 0.128 0.872 4 O -0.362 6.362 5 C 0.002 3.998 6 H 0.133 0.867 7 O -0.356 6.356 8 C -0.011 4.011 9 N -0.401 5.401 10 C 0.395 3.605 11 O -0.408 6.408 12 N -0.310 5.310 13 C 0.113 3.887 14 N -0.157 5.157 15 C -0.080 4.080 16 C -0.185 4.185 17 C -0.173 4.173 18 C 0.013 3.987 19 O -0.229 6.229 20 C -0.008 4.008 21 C -0.010 4.010 22 C -0.567 4.567 23 H 0.076 0.924 24 C -0.141 4.141 25 N -0.527 5.527 26 Si 0.727 3.273 27 H -0.201 1.201 28 H -0.211 1.211 29 H -0.201 1.201 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.221 0.779 34 H 0.222 0.778 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.235 0.765 38 H 0.258 0.742 39 H 0.173 0.827 40 H 0.152 0.848 41 H 0.162 0.838 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.046 0.954 45 H 0.046 0.954 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.627 11.260 -19.827 23.088 hybrid contribution 0.241 -1.977 2.083 2.882 sum -3.386 9.284 -17.744 20.310 Atomic orbital electron populations 1.22378 0.95148 1.03417 1.02847 1.22593 0.94223 0.97417 0.84302 0.87207 1.86690 1.76881 1.29034 1.43586 1.22996 0.91484 0.85249 1.00068 0.86727 1.86673 1.75685 1.24536 1.48751 1.21751 0.93117 0.98464 0.87784 1.44994 1.05785 1.64143 1.25156 1.15936 0.82634 0.79545 0.82342 1.91033 1.54034 1.53579 1.42163 1.42483 1.05397 1.59770 1.23393 1.17490 0.84612 0.96977 0.89622 1.67634 1.03398 1.18493 1.26143 1.22414 0.90320 0.97898 0.97410 1.21881 1.00788 1.00779 0.95017 1.21585 0.91567 1.02805 1.01366 1.19541 0.90299 0.98347 0.90534 1.86100 1.34541 1.71537 1.30737 1.23386 1.00010 0.94058 0.83324 1.19117 0.92558 0.97399 0.91939 1.20913 0.93569 1.37982 1.04217 0.92379 1.24981 0.94809 0.95886 0.98438 1.69954 1.02759 1.45910 1.34091 0.86538 0.78667 0.80030 0.82103 1.20070 1.21091 1.20060 0.91316 0.91695 0.91425 0.77948 0.77789 0.90640 0.90508 0.76457 0.74222 0.82673 0.84835 0.83760 0.92964 0.92956 0.95382 0.95376 0.92587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.87 9.34 37.16 0.35 -0.52 16 2 C 0.07 0.40 3.52 -26.73 -0.09 0.31 16 3 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 4 O -0.56 -3.52 12.46 -40.08 -0.50 -4.02 16 5 C 0.06 0.37 2.98 -26.73 -0.08 0.29 16 6 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 7 O -0.55 -3.48 12.20 -40.08 -0.49 -3.97 16 8 C 0.11 1.00 5.14 -4.05 -0.02 0.98 16 9 N -0.74 -7.95 5.45 -65.23 -0.36 -8.31 16 10 C 0.70 10.48 8.53 -86.92 -0.74 9.74 16 11 O -0.54 -9.99 14.59 5.29 0.08 -9.92 16 12 N -0.66 -10.02 5.40 -15.67 -0.08 -10.11 16 13 C 0.35 5.92 7.45 -154.43 -1.15 4.77 16 14 N -0.44 -7.65 7.87 -12.22 -0.10 -7.74 16 15 C 0.08 1.07 11.17 -17.55 -0.20 0.87 16 16 C -0.16 -2.08 10.10 -39.44 -0.40 -2.48 16 17 C -0.15 -2.17 9.14 -39.17 -0.36 -2.52 16 18 C 0.06 1.09 6.72 -38.92 -0.26 0.83 16 19 O -0.32 -5.88 9.39 -19.69 -0.18 -6.06 16 20 C 0.07 1.31 4.70 37.16 0.17 1.49 16 21 C 0.03 0.67 5.34 -27.88 -0.15 0.52 16 22 C -0.53 -14.13 9.11 -34.44 -0.31 -14.44 16 23 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 24 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 25 N -0.89 -25.58 13.29 55.43 0.74 -24.84 16 26 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 27 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 28 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 29 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.33 7.56 -51.93 -0.39 -0.06 16 33 H 0.37 1.07 7.83 45.56 0.36 1.42 16 34 H 0.37 1.30 7.83 45.56 0.36 1.66 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.75 7.56 -51.93 -0.39 0.36 16 37 H 0.40 3.64 8.36 -40.82 -0.34 3.30 16 38 H 0.42 5.68 8.06 -40.82 -0.33 5.35 16 39 H 0.16 1.71 8.06 -52.49 -0.42 1.29 16 40 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 41 H 0.14 1.97 6.44 -52.49 -0.34 1.63 16 42 H 0.05 0.98 7.70 -51.93 -0.40 0.59 16 43 H 0.05 0.99 7.70 -51.93 -0.40 0.59 16 44 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 388.39 15.07 5.85 5.85 Total: -1.00 -35.16 388.39 -8.63 -43.79 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -5.23 Total: 8.25 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: -3.34 Total: 1.42 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: 0.20 Total: -51.00 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -1.10 Total: -23.96 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.16 -8.63 -43.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203676899.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.079 kcal (2) G-P(sol) polarization free energy of solvation -35.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds