Wall clock time and date at job start Sat Apr 11 2020 05:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47579 * 2 1 4 4 O 1.42906 * 109.47183 * 240.00263 * 2 1 3 5 5 C 1.53000 * 109.47450 * 120.00190 * 2 1 3 6 6 H 1.09000 * 109.46897 * 295.00482 * 5 2 1 7 7 O 1.42907 * 109.46738 * 54.99726 * 5 2 1 8 8 C 1.52998 * 109.47441 * 174.99758 * 5 2 1 9 9 N 1.46496 * 109.46991 * 179.97438 * 8 5 2 10 10 C 1.34776 * 119.99988 * 180.02562 * 9 8 5 11 11 O 1.21589 * 120.00100 * 0.02562 * 10 9 8 12 12 N 1.34775 * 120.00018 * 179.97438 * 10 9 8 13 13 C 1.39594 * 119.99902 * 179.97438 * 12 10 9 14 14 N 1.32268 * 119.72347 * 0.29564 * 13 12 10 15 15 C 1.31970 * 121.68397 * 180.28583 * 14 13 12 16 16 C 1.38074 * 120.95656 * 359.70589 * 15 14 13 17 17 C 1.38794 * 119.35179 * 359.97438 * 16 15 14 18 18 C 1.38781 * 118.44773 * 359.97438 * 17 16 15 19 19 O 1.35983 * 120.49767 * 179.97438 * 18 17 16 20 20 C 1.42906 * 116.99537 * 0.02562 * 19 18 17 21 21 C 1.53006 * 109.46748 * 179.97438 * 20 19 18 22 22 C 1.50699 * 109.46866 * 179.97438 * 21 20 19 23 23 H 1.08003 * 119.99962 * 359.97438 * 22 21 20 24 24 C 1.37874 * 120.00270 * 180.02562 * 22 21 20 25 25 N 1.31522 * 119.99834 * 359.97438 * 24 22 21 26 26 Si 1.86793 * 120.00496 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47325 * 59.99531 * 26 24 22 28 28 H 1.48496 * 109.47425 * 179.97438 * 26 24 22 29 29 H 1.48505 * 109.47183 * 299.99726 * 26 24 22 30 30 H 1.08997 * 109.47190 * 299.99863 * 1 2 3 31 31 H 1.08998 * 109.47094 * 59.99541 * 1 2 3 32 32 H 1.08997 * 109.47265 * 179.97438 * 1 2 3 33 33 H 0.96702 * 113.99782 * 300.00332 * 4 2 1 34 34 H 0.96696 * 114.00108 * 60.00218 * 7 5 2 35 35 H 1.08999 * 109.46870 * 60.00046 * 8 5 2 36 36 H 1.08995 * 109.46965 * 300.00283 * 8 5 2 37 37 H 0.97000 * 120.00201 * 0.02562 * 9 8 5 38 38 H 0.97000 * 120.00172 * 0.02562 * 12 10 9 39 39 H 1.08000 * 119.52522 * 179.72561 * 15 14 13 40 40 H 1.07998 * 120.32407 * 180.02562 * 16 15 14 41 41 H 1.07993 * 120.77632 * 180.02562 * 17 16 15 42 42 H 1.09000 * 109.47490 * 59.99651 * 20 19 18 43 43 H 1.09001 * 109.47232 * 299.99005 * 20 19 18 44 44 H 1.08993 * 109.46955 * 299.99993 * 21 20 19 45 45 H 1.09000 * 109.47050 * 59.99822 * 21 20 19 46 46 H 0.96992 * 120.00032 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.0400 -0.7213 1.2492 6 1 1.7516 -0.1584 2.1369 7 8 1.4702 -2.0304 1.3093 8 6 3.5648 -0.8311 1.1879 9 7 4.0532 -1.5212 2.3843 10 6 5.3741 -1.7327 2.5483 11 8 6.1605 -1.3503 1.7035 12 7 5.8234 -2.3671 3.6492 13 6 7.1915 -2.5866 3.8188 14 7 8.0425 -2.1645 2.8984 15 6 9.3428 -2.3561 3.0166 16 6 9.8681 -3.0041 4.1169 17 6 9.0130 -3.4587 5.1112 18 6 7.6504 -3.2424 4.9610 19 8 6.7750 -3.6707 5.9094 20 6 7.3256 -4.3410 7.0450 21 6 6.1968 -4.7448 7.9957 22 6 6.7773 -5.4522 9.1930 23 1 7.8446 -5.5994 9.2681 24 6 5.9460 -5.9124 10.1920 25 7 4.6462 -5.7335 10.1002 26 14 6.6656 -6.7886 11.6764 27 1 7.6040 -5.8790 12.3813 28 1 5.5700 -7.1806 12.5990 29 1 7.3949 -8.0025 11.2292 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.7209 -1.5952 -1.2330 34 1 1.6857 -2.5885 0.5496 35 1 3.9994 0.1674 1.1420 36 1 3.8531 -1.3940 0.3001 37 1 3.4259 -1.8259 3.0585 38 1 5.1961 -2.6718 4.3234 39 1 10.0058 -2.0006 2.2417 40 1 10.9340 -3.1551 4.2034 41 1 9.3990 -3.9680 5.9817 42 1 8.0145 -3.6733 7.5624 43 1 7.8608 -5.2320 6.7168 44 1 5.6619 -3.8536 8.3238 45 1 5.5076 -5.4123 7.4785 46 1 4.0613 -6.0569 10.8032 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203676899.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:09 Heat of formation + Delta-G solvation = -156.673763 kcal Electronic energy + Delta-G solvation = -28806.049542 eV Core-core repulsion = 24502.345872 eV Total energy + Delta-G solvation = -4303.703670 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.08336 -40.86239 -39.89427 -39.08685 -36.75287 -35.97645 -35.44587 -35.32096 -32.87951 -32.35147 -32.04773 -30.59254 -29.25668 -27.15783 -25.40217 -24.43424 -23.76720 -22.73077 -22.47115 -21.73234 -19.90268 -19.38137 -18.90997 -18.51031 -18.01318 -17.52980 -17.31129 -17.15231 -16.80604 -16.50376 -16.49079 -16.08137 -15.63887 -15.39883 -15.18288 -15.03213 -14.91755 -14.77613 -14.34065 -14.13030 -13.69281 -13.62965 -13.41714 -13.28336 -13.05556 -12.80383 -12.71928 -12.67667 -12.44487 -11.87519 -11.80430 -11.70296 -11.68672 -11.65317 -11.59034 -11.41787 -10.69365 -10.59694 -10.43305 -10.23427 -10.12693 -8.81792 -8.25136 -6.37732 0.15444 0.31259 1.38413 1.42833 1.45514 1.53312 2.07333 2.12531 2.44992 2.86255 2.92054 3.10007 3.31290 3.38687 3.57846 3.68027 3.80914 3.87641 3.99502 4.08622 4.14666 4.28558 4.30592 4.34819 4.37970 4.48766 4.66140 4.75675 4.82501 4.90196 4.97298 5.14012 5.14772 5.27849 5.31677 5.32129 5.37235 5.51035 5.51995 5.70980 5.81363 6.08634 6.35584 6.59134 6.70100 6.77056 6.78825 7.15428 7.32250 7.50905 8.87308 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010452 B = 0.002329 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2678.161111 B =12018.301201 C =14547.382597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.080 3.920 3 H 0.111 0.889 4 O -0.573 6.573 5 C 0.077 3.923 6 H 0.121 0.879 7 O -0.560 6.560 8 C 0.114 3.886 9 N -0.726 5.726 10 C 0.692 3.308 11 O -0.576 6.576 12 N -0.661 5.661 13 C 0.328 3.672 14 N -0.473 5.473 15 C 0.074 3.926 16 C -0.147 4.147 17 C -0.147 4.147 18 C 0.040 3.960 19 O -0.329 6.329 20 C 0.083 3.917 21 C 0.030 3.970 22 C -0.545 4.545 23 H 0.071 0.929 24 C 0.003 3.997 25 N -0.929 5.929 26 Si 0.971 3.029 27 H -0.265 1.265 28 H -0.285 1.285 29 H -0.265 1.265 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.387 0.613 34 H 0.386 0.614 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.410 0.590 38 H 0.424 0.576 39 H 0.186 0.814 40 H 0.176 0.824 41 H 0.158 0.842 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.001 0.999 45 H 0.001 0.999 46 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.019 9.370 -18.750 21.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.020 3.980 3 H 0.128 0.872 4 O -0.382 6.382 5 C 0.017 3.983 6 H 0.139 0.861 7 O -0.368 6.368 8 C -0.010 4.010 9 N -0.384 5.384 10 C 0.392 3.608 11 O -0.450 6.450 12 N -0.311 5.311 13 C 0.095 3.905 14 N -0.188 5.188 15 C -0.083 4.083 16 C -0.168 4.168 17 C -0.173 4.173 18 C -0.011 4.011 19 O -0.243 6.243 20 C 0.009 3.991 21 C -0.007 4.007 22 C -0.583 4.583 23 H 0.089 0.911 24 C -0.195 4.195 25 N -0.569 5.569 26 Si 0.795 3.205 27 H -0.189 1.189 28 H -0.211 1.211 29 H -0.189 1.189 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.236 0.764 34 H 0.236 0.764 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.246 0.754 38 H 0.262 0.738 39 H 0.202 0.798 40 H 0.193 0.807 41 H 0.175 0.825 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.019 0.981 45 H 0.019 0.981 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.081 10.966 -19.754 22.689 hybrid contribution -0.204 -1.857 1.933 2.688 sum -2.285 9.109 -17.821 20.144 Atomic orbital electron populations 1.22327 0.94427 1.03508 1.03005 1.22558 0.94596 0.97262 0.83563 0.87156 1.86658 1.77275 1.30314 1.43906 1.22873 0.89137 0.85454 1.00804 0.86116 1.86652 1.75564 1.24777 1.49778 1.21869 0.95099 0.97479 0.86563 1.44947 1.04444 1.63212 1.25790 1.16142 0.83555 0.79265 0.81861 1.90990 1.55340 1.55319 1.43396 1.42510 1.05271 1.59741 1.23558 1.17690 0.85267 0.97625 0.89929 1.67682 1.04911 1.19501 1.26737 1.23060 0.89675 0.97036 0.98497 1.22271 1.02542 0.98617 0.93331 1.21892 0.90834 1.02317 1.02274 1.19681 0.91135 0.99940 0.90384 1.86028 1.35275 1.72102 1.30872 1.22955 0.97850 0.94993 0.83286 1.18939 0.93532 0.95558 0.92681 1.21378 0.94344 1.37749 1.04803 0.91054 1.25969 0.95118 0.96708 1.01744 1.70095 1.04290 1.47215 1.35264 0.85413 0.77946 0.79079 0.78110 1.18948 1.21055 1.18930 0.90972 0.91697 0.91354 0.76360 0.76372 0.91502 0.91376 0.75359 0.73764 0.79761 0.80657 0.82470 0.91778 0.91770 0.98056 0.98059 0.92528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.50 9.34 71.98 0.67 -0.82 16 2 C 0.08 0.80 3.52 30.59 0.11 0.91 16 3 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 4 O -0.57 -6.89 12.46 -144.34 -1.80 -8.69 16 5 C 0.08 0.88 2.98 30.59 0.09 0.97 16 6 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 7 O -0.56 -6.55 12.20 -144.34 -1.76 -8.31 16 8 C 0.11 2.03 5.14 86.38 0.44 2.48 16 9 N -0.73 -15.80 5.45 -478.56 -2.61 -18.41 16 10 C 0.69 21.41 8.53 179.06 1.53 22.94 16 11 O -0.58 -22.00 14.59 -4.00 -0.06 -22.06 16 12 N -0.66 -20.66 5.40 -321.75 -1.74 -22.40 16 13 C 0.33 11.28 7.45 132.98 0.99 12.27 16 14 N -0.47 -16.19 7.87 -192.57 -1.52 -17.70 16 15 C 0.07 1.92 11.17 84.63 0.95 2.86 16 16 C -0.15 -3.27 10.10 22.36 0.23 -3.04 16 17 C -0.15 -4.03 9.14 22.53 0.21 -3.82 16 18 C 0.04 1.33 6.72 22.70 0.15 1.48 16 19 O -0.33 -12.37 9.39 -93.36 -0.88 -13.25 16 20 C 0.08 3.28 4.70 71.98 0.34 3.62 16 21 C 0.03 1.53 5.34 29.85 0.16 1.69 16 22 C -0.54 -29.11 9.11 25.60 0.23 -28.88 16 23 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 24 C 0.00 0.19 5.46 84.65 0.46 0.65 16 25 N -0.93 -54.47 13.29 21.45 0.28 -54.19 16 26 Si 0.97 41.96 29.54 68.60 2.03 43.99 16 27 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 28 H -0.29 -12.20 7.11 99.48 0.71 -11.49 16 29 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 30 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.07 0.58 7.56 -2.39 -0.02 0.56 16 33 H 0.39 1.92 7.83 -74.06 -0.58 1.34 16 34 H 0.39 2.33 7.83 -74.06 -0.58 1.75 16 35 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.07 1.36 7.56 -2.39 -0.02 1.34 16 37 H 0.41 7.46 8.36 -92.71 -0.78 6.68 16 38 H 0.42 12.00 8.06 -92.71 -0.75 11.26 16 39 H 0.19 3.51 8.06 -2.91 -0.02 3.49 16 40 H 0.18 2.42 8.06 -2.91 -0.02 2.40 16 41 H 0.16 3.86 6.44 -2.91 -0.02 3.84 16 42 H 0.06 2.35 7.70 -2.39 -0.02 2.33 16 43 H 0.06 2.35 7.70 -2.39 -0.02 2.33 16 44 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 45 H 0.00 0.05 8.14 -2.39 -0.02 0.04 16 46 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -77.01 388.39 -3.12 -80.13 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: -1.63 Total: 27.60 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: 6.56 Total: 13.29 kcal Atomic # 7 Polarization: -107.12 SS G_CDS: -5.58 Total: -112.70 kcal Atomic # 8 Polarization: -47.81 SS G_CDS: -4.49 Total: -52.31 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -77.01 -3.12 -80.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203676899.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.547 kcal (2) G-P(sol) polarization free energy of solvation -77.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds