Wall clock time and date at job start Sat Apr 11 2020 05:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35366 * 116.99976 * 2 1 4 4 C 1.36091 * 125.57672 * 179.97438 * 3 2 1 5 5 C 1.39917 * 107.17625 * 179.97438 * 4 3 2 6 6 C 1.37830 * 106.67658 * 0.02562 * 5 4 3 7 7 C 1.46123 * 126.02804 * 179.97438 * 6 5 4 8 8 O 1.21768 * 120.00593 * 4.57189 * 7 6 5 9 9 N 1.34783 * 119.99770 * 184.57438 * 7 6 5 10 10 C 1.46501 * 119.99950 * 3.89834 * 9 7 6 11 11 C 1.46500 * 119.99960 * 183.90365 * 9 7 6 12 12 H 1.09000 * 109.47160 * 359.97438 * 11 9 7 13 13 C 1.53002 * 109.46840 * 239.99722 * 11 9 7 14 14 C 1.53000 * 109.47087 * 119.99866 * 11 9 7 15 15 N 1.46901 * 109.47108 * 304.99532 * 14 11 9 16 16 C 1.46894 * 110.99956 * 180.02562 * 15 14 11 17 17 C 1.50701 * 109.47283 * 180.02562 * 16 15 14 18 18 O 1.21295 * 119.99927 * 359.97438 * 17 16 15 19 19 N 1.34773 * 120.00224 * 180.02562 * 17 16 15 20 20 C 1.37105 * 120.00136 * 179.97438 * 19 17 16 21 21 H 1.08001 * 119.99945 * 359.97438 * 20 19 17 22 22 C 1.38952 * 120.00164 * 179.97438 * 20 19 17 23 23 N 1.31401 * 120.00047 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 119.99836 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47370 * 89.99855 * 24 22 20 26 26 H 1.48501 * 109.47091 * 209.99766 * 24 22 20 27 27 H 1.48505 * 109.47062 * 329.99701 * 24 22 20 28 28 O 1.34011 * 125.57911 * 0.30929 * 3 2 1 29 29 H 1.09008 * 109.47283 * 300.00231 * 1 2 3 30 30 H 1.09000 * 109.47536 * 59.99688 * 1 2 3 31 31 H 1.09003 * 109.47308 * 180.02562 * 1 2 3 32 32 H 1.07997 * 126.41269 * 359.97438 * 4 3 2 33 33 H 1.08002 * 126.65706 * 180.02562 * 5 4 3 34 34 H 1.09001 * 109.46674 * 84.16092 * 10 9 7 35 35 H 1.09002 * 109.47311 * 324.16070 * 10 9 7 36 36 H 1.09001 * 109.47025 * 204.16097 * 10 9 7 37 37 H 1.08997 * 109.47013 * 299.99728 * 13 11 9 38 38 H 1.08998 * 109.47458 * 60.00281 * 13 11 9 39 39 H 1.09004 * 109.46537 * 179.97438 * 13 11 9 40 40 H 1.08995 * 109.47286 * 64.99931 * 14 11 9 41 41 H 1.09003 * 109.47024 * 185.00350 * 14 11 9 42 42 H 1.00907 * 110.99930 * 56.05145 * 15 14 11 43 43 H 1.08999 * 109.47160 * 299.99959 * 16 15 14 44 44 H 1.09005 * 109.47506 * 60.00265 * 16 15 14 45 45 H 0.96998 * 120.00075 * 359.97438 * 19 17 16 46 46 H 0.97001 * 120.00234 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0436 1.2061 0.0000 4 6 3.3892 1.4091 0.0005 5 6 3.5985 2.7925 -0.0003 6 6 2.3521 3.3810 -0.0007 7 6 2.0795 4.8166 -0.0010 8 8 2.9986 5.6109 -0.0850 9 7 0.8106 5.2616 0.0918 10 6 -0.2875 4.3100 0.2787 11 6 0.5296 6.6968 0.0055 12 1 1.4632 7.2422 -0.1321 13 6 -0.1472 7.1624 1.2963 14 6 -0.3977 6.9644 -1.1817 15 7 0.1994 6.4100 -2.4041 16 6 -0.6650 6.6493 -3.5675 17 6 -0.0214 6.0674 -4.7996 18 8 1.0521 5.5087 -4.7169 19 7 -0.6380 6.1686 -5.9937 20 6 -0.0522 5.6396 -7.1148 21 1 0.9035 5.1422 -7.0411 22 6 -0.6883 5.7435 -8.3459 23 7 -0.1266 5.2370 -9.4204 24 14 -2.3411 6.6045 -8.4735 25 1 -2.1272 8.0494 -8.7414 26 1 -3.1264 6.0064 -9.5828 27 1 -3.0836 6.4422 -7.1977 28 8 1.4264 2.3957 0.0059 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 4.1528 0.6453 0.0013 33 1 4.5515 3.3005 -0.0006 34 1 -0.3888 4.0760 1.3385 35 1 -0.0751 3.3964 -0.2765 36 1 -1.2155 4.7498 -0.0867 37 1 -1.0808 6.6170 1.4342 38 1 0.5133 6.9718 2.1421 39 1 -0.3559 8.2303 1.2322 40 1 -1.3633 6.4917 -1.0024 41 1 -0.5356 8.0392 -1.3000 42 1 0.3968 5.4263 -2.2961 43 1 -1.6327 6.1746 -3.4049 44 1 -0.8044 7.7219 -3.7021 45 1 -1.4963 6.6157 -6.0600 46 1 -0.5704 5.3099 -10.2799 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319550406.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:05 Heat of formation + Delta-G solvation = -96.602868 kcal Electronic energy + Delta-G solvation = -30077.321904 eV Core-core repulsion = 25776.223103 eV Total energy + Delta-G solvation = -4301.098800 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -43.86479 -41.04808 -40.27980 -39.52095 -38.10898 -36.22355 -35.61392 -34.30383 -33.77494 -32.95507 -30.43108 -29.12722 -28.26351 -27.85822 -26.62680 -24.76724 -24.14442 -23.09333 -21.94973 -21.33224 -20.75420 -20.23744 -19.59031 -18.63434 -18.18449 -17.90621 -17.52899 -17.19371 -16.64958 -16.47420 -16.34638 -15.85510 -15.59744 -15.48592 -15.28650 -14.92978 -14.53936 -14.49283 -14.27573 -14.24757 -14.22636 -14.05378 -13.97204 -13.26561 -13.15334 -13.04646 -13.00524 -12.87394 -12.78360 -12.54362 -12.45724 -12.42470 -11.98511 -11.89243 -11.53524 -11.33627 -11.12125 -10.49495 -10.27051 -9.85672 -9.31419 -9.12887 -8.42709 -6.04394 -0.05935 1.05143 1.28646 1.30183 1.35482 1.44143 1.83847 1.93297 2.08561 2.22265 2.23845 2.70115 3.13234 3.33378 3.53419 3.73107 3.91976 4.11253 4.12864 4.16314 4.20104 4.25375 4.27772 4.31118 4.39687 4.49846 4.53052 4.58911 4.65288 4.69320 4.73117 4.80614 4.81839 4.88322 5.08988 5.21665 5.26454 5.33748 5.50944 5.58176 5.88367 6.03989 6.06755 6.19486 6.30525 6.58177 6.86253 6.95093 7.37379 7.95196 8.75276 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010362 B = 0.003070 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2701.571525 B = 9119.607585 C =10512.431046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.268 6.268 3 C 0.207 3.793 4 C -0.247 4.247 5 C -0.086 4.086 6 C -0.123 4.123 7 C 0.603 3.397 8 O -0.558 6.558 9 N -0.600 5.600 10 C 0.067 3.933 11 C 0.135 3.865 12 H 0.080 0.920 13 C -0.146 4.146 14 C 0.052 3.948 15 N -0.692 5.692 16 C 0.064 3.936 17 C 0.444 3.556 18 O -0.618 6.618 19 N -0.588 5.588 20 C -0.332 4.332 21 H 0.050 0.950 22 C -0.015 4.015 23 N -0.935 5.935 24 Si 0.968 3.032 25 H -0.257 1.257 26 H -0.274 1.274 27 H -0.228 1.228 28 O -0.176 6.176 29 H 0.077 0.923 30 H 0.060 0.940 31 H 0.137 0.863 32 H 0.183 0.817 33 H 0.170 0.830 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.078 0.922 38 H 0.054 0.946 39 H 0.088 0.912 40 H 0.060 0.940 41 H 0.104 0.896 42 H 0.336 0.664 43 H 0.081 0.919 44 H 0.118 0.882 45 H 0.391 0.609 46 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.898 -3.482 26.905 28.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.182 6.182 3 C 0.110 3.890 4 C -0.267 4.267 5 C -0.107 4.107 6 C -0.173 4.173 7 C 0.392 3.608 8 O -0.439 6.439 9 N -0.331 5.331 10 C -0.074 4.074 11 C 0.032 3.968 12 H 0.098 0.902 13 C -0.205 4.205 14 C -0.077 4.077 15 N -0.325 5.325 16 C -0.068 4.068 17 C 0.232 3.768 18 O -0.503 6.503 19 N -0.230 5.230 20 C -0.461 4.461 21 H 0.068 0.932 22 C -0.214 4.214 23 N -0.576 5.576 24 Si 0.788 3.212 25 H -0.182 1.182 26 H -0.199 1.199 27 H -0.152 1.152 28 O -0.077 6.077 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.155 0.845 32 H 0.200 0.800 33 H 0.187 0.813 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.115 0.885 37 H 0.097 0.903 38 H 0.074 0.926 39 H 0.107 0.893 40 H 0.078 0.922 41 H 0.122 0.878 42 H 0.155 0.845 43 H 0.099 0.901 44 H 0.136 0.864 45 H 0.227 0.773 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.601 -3.047 26.597 28.119 hybrid contribution -0.971 -0.623 -0.848 1.432 sum -9.572 -3.669 25.749 27.715 Atomic orbital electron populations 1.23522 0.74734 1.07044 1.03124 1.86421 1.25106 1.17879 1.88745 1.21224 0.90172 0.78980 0.98605 1.21051 0.92875 0.96711 1.16014 1.22227 0.97971 0.93430 0.97038 1.21790 0.87678 0.87302 1.20488 1.16638 0.83606 0.84277 0.76236 1.90861 1.45323 1.54882 1.52856 1.47804 1.05885 1.08550 1.70897 1.22201 0.89753 0.92461 1.02989 1.21326 1.00059 0.79419 0.95962 0.90197 1.22020 1.00935 1.03087 0.94429 1.22489 0.95718 1.02053 0.87414 1.59962 1.46990 1.22668 1.02886 1.21650 0.94580 1.02957 0.87635 1.21102 0.86539 0.83641 0.85531 1.90571 1.24801 1.48404 1.86482 1.41995 1.21157 1.53137 1.06712 1.18996 1.05326 1.35416 0.86354 0.93154 1.26162 1.03727 0.97880 0.93602 1.69810 1.41526 1.46058 1.00160 0.85323 0.76724 0.78933 0.80238 1.18181 1.19899 1.15159 1.84206 1.36351 1.13972 1.73174 0.90463 0.92090 0.84470 0.79994 0.81254 0.90446 0.90905 0.88494 0.90323 0.92638 0.89274 0.92200 0.87833 0.84507 0.90136 0.86367 0.77339 0.91083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 10.74 113.37 1.22 1.32 16 2 O -0.27 -5.06 10.55 -64.35 -0.68 -5.74 16 3 C 0.21 4.73 7.86 67.32 0.53 5.26 16 4 C -0.25 -5.67 10.89 22.18 0.24 -5.43 16 5 C -0.09 -2.29 10.67 22.58 0.24 -2.05 16 6 C -0.12 -3.49 6.84 24.22 0.17 -3.33 16 7 C 0.60 18.78 7.63 86.29 0.66 19.44 16 8 O -0.56 -21.52 16.21 -4.56 -0.07 -21.60 16 9 N -0.60 -14.03 1.83 -827.88 -1.52 -15.54 16 10 C 0.07 1.08 8.83 127.77 1.13 2.20 16 11 C 0.14 2.84 2.94 44.99 0.13 2.97 16 12 H 0.08 2.26 6.90 -2.39 -0.02 2.24 16 13 C -0.15 -1.87 9.19 71.98 0.66 -1.21 16 14 C 0.05 1.03 5.00 86.30 0.43 1.47 16 15 N -0.69 -21.68 6.12 -517.94 -3.17 -24.85 16 16 C 0.06 1.97 6.17 85.56 0.53 2.49 16 17 C 0.44 20.78 7.82 87.66 0.69 21.46 16 18 O -0.62 -36.39 15.78 -3.08 -0.05 -36.44 16 19 N -0.59 -28.21 5.09 -306.98 -1.56 -29.78 16 20 C -0.33 -19.88 10.16 84.04 0.85 -19.03 16 21 H 0.05 3.63 7.39 -2.91 -0.02 3.60 16 22 C -0.02 -0.85 5.50 84.93 0.47 -0.39 16 23 N -0.94 -57.12 13.96 21.66 0.30 -56.81 16 24 Si 0.97 38.71 27.74 68.60 1.90 40.61 16 25 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 26 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 27 H -0.23 -7.53 6.52 99.48 0.65 -6.88 16 28 O -0.18 -4.20 6.65 13.45 0.09 -4.11 16 29 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 30 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.14 0.76 8.14 -2.39 -0.02 0.75 16 32 H 0.18 3.24 8.06 -2.91 -0.02 3.22 16 33 H 0.17 4.22 8.06 -2.91 -0.02 4.20 16 34 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.07 1.37 5.06 -2.39 -0.01 1.36 16 36 H 0.10 1.12 6.54 -2.39 -0.02 1.11 16 37 H 0.08 0.70 7.67 -2.39 -0.02 0.68 16 38 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.06 0.86 6.86 -2.39 -0.02 0.84 16 41 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.34 11.95 7.56 -89.69 -0.68 11.28 16 43 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.12 3.00 8.14 -2.38 -0.02 2.98 16 45 H 0.39 15.24 5.76 -92.71 -0.53 14.70 16 46 H 0.28 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -88.88 386.31 2.94 -85.93 By element: Atomic # 1 Polarization: 43.38 SS G_CDS: -0.24 Total: 43.13 kcal Atomic # 6 Polarization: 17.25 SS G_CDS: 7.94 Total: 25.19 kcal Atomic # 7 Polarization: -121.04 SS G_CDS: -5.95 Total: -126.99 kcal Atomic # 8 Polarization: -67.17 SS G_CDS: -0.71 Total: -67.88 kcal Atomic # 14 Polarization: 38.71 SS G_CDS: 1.90 Total: 40.61 kcal Total: -88.88 2.94 -85.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319550406.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.670 kcal (2) G-P(sol) polarization free energy of solvation -88.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds