Wall clock time and date at job start Sat Apr 11 2020 05:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42897 * 113.99910 * 2 1 4 4 C 1.50698 * 109.47015 * 180.02562 * 3 2 1 5 5 C 1.35319 * 126.66148 * 90.00243 * 4 3 2 6 6 C 1.42274 * 103.91847 * 180.20555 * 5 4 3 7 7 C 1.48332 * 126.93977 * 179.75655 * 6 5 4 8 8 O 1.21501 * 119.99882 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00342 * 180.02562 * 7 6 5 10 10 C 1.46497 * 119.99990 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.46820 * 175.89741 * 10 9 7 12 12 N 1.46497 * 109.54448 * 305.05219 * 11 10 9 13 13 C 1.36941 * 119.99868 * 300.69377 * 12 11 10 14 14 H 1.07998 * 119.99867 * 354.08306 * 13 12 11 15 15 C 1.38816 * 119.99722 * 174.07644 * 13 12 11 16 16 N 1.31613 * 120.00455 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99702 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46917 * 90.00170 * 17 15 13 19 19 H 1.48500 * 109.46877 * 210.00190 * 17 15 13 20 20 H 1.48496 * 109.47286 * 330.00067 * 17 15 13 21 21 C 1.53183 * 109.54224 * 184.87959 * 11 10 9 22 22 C 1.53098 * 109.15712 * 183.24173 * 21 11 10 23 23 O 1.42907 * 109.48916 * 57.47115 * 22 21 11 24 24 C 1.42900 * 114.09450 * 298.88718 * 23 22 21 25 25 C 1.53095 * 109.41265 * 61.16284 * 24 23 22 26 26 N 1.30985 * 106.12501 * 359.63539 * 6 5 4 27 27 O 1.20908 * 111.43825 * 0.38587 * 26 6 5 28 28 H 1.09003 * 109.46867 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46676 * 299.99399 * 1 2 3 30 30 H 1.08994 * 109.47044 * 59.99582 * 1 2 3 31 31 H 1.09004 * 109.47325 * 60.00262 * 3 2 1 32 32 H 1.08999 * 109.47071 * 300.00425 * 3 2 1 33 33 H 1.07996 * 128.04613 * 359.94194 * 5 4 3 34 34 H 0.97004 * 119.99779 * 359.97438 * 9 7 6 35 35 H 1.09005 * 109.46980 * 295.89036 * 10 9 7 36 36 H 1.08995 * 109.47842 * 55.89277 * 10 9 7 37 37 H 0.97000 * 120.00121 * 120.69208 * 12 11 10 38 38 H 0.96998 * 120.00517 * 180.02562 * 16 15 13 39 39 H 1.09006 * 109.52007 * 303.05521 * 21 11 10 40 40 H 1.08999 * 109.52497 * 63.24213 * 21 11 10 41 41 H 1.08997 * 109.40558 * 297.48876 * 22 21 11 42 42 H 1.09001 * 109.49351 * 177.50588 * 22 21 11 43 43 H 1.08993 * 109.48291 * 301.17616 * 24 23 22 44 44 H 1.09008 * 109.48583 * 181.14454 * 24 23 22 45 45 H 1.09001 * 109.51658 * 182.48304 * 25 24 23 46 46 H 1.08995 * 109.57621 * 62.32682 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.3176 1.1229 -1.0865 6 6 5.6254 1.0142 -0.5370 7 6 6.9010 0.9062 -1.2863 8 8 6.8935 0.9044 -2.5013 9 7 8.0682 0.8090 -0.6195 10 6 9.3280 0.7028 -1.3596 11 6 10.4996 0.7091 -0.3756 12 7 10.4197 1.8998 0.4741 13 6 10.4419 3.1469 -0.0911 14 1 10.6141 3.2561 -1.1517 15 6 10.2429 4.2707 0.6991 16 7 10.0334 4.1377 1.9917 17 14 10.2724 5.9719 -0.0720 18 1 8.9018 6.3416 -0.5080 19 1 10.7578 6.9591 0.9255 20 1 11.1812 5.9673 -1.2464 21 6 11.8203 0.7210 -1.1514 22 6 12.9855 0.6453 -0.1611 23 8 12.8546 -0.5307 0.6401 24 6 11.6606 -0.5725 1.4242 25 6 10.4422 -0.5482 0.4975 26 7 5.4759 1.0315 0.7642 27 8 4.3108 1.1235 1.0740 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.6887 1.8464 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 4.0331 1.1448 -2.1281 34 1 8.0741 0.8100 0.3506 35 1 9.3373 -0.2262 -1.9297 36 1 9.4214 1.5482 -2.0412 37 1 10.3510 1.8049 1.4370 38 1 9.8940 4.9229 2.5438 39 1 11.8570 -0.1382 -1.8213 40 1 11.8933 1.6403 -1.7324 41 1 12.9727 1.5260 0.4810 42 1 13.9269 0.6088 -0.7093 43 1 11.6305 0.2922 2.0870 44 1 11.6474 -1.4865 2.0181 45 1 9.5306 -0.5355 1.0948 46 1 10.4490 -1.4337 -0.1380 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325027956.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:15 Heat of formation + Delta-G solvation = -69.378263 kcal Electronic energy + Delta-G solvation = -30299.969892 eV Core-core repulsion = 26000.051639 eV Total energy + Delta-G solvation = -4299.918253 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -46.27079 -41.18558 -40.20214 -38.91329 -37.38128 -35.34384 -35.11355 -34.07955 -33.54947 -32.01904 -30.99282 -28.75174 -28.68883 -26.53706 -26.06823 -25.58603 -24.45057 -23.89182 -23.15300 -21.20280 -20.17440 -19.24958 -19.06520 -18.95595 -18.04007 -17.26016 -17.22605 -17.11159 -16.79007 -16.68361 -16.42477 -16.26581 -16.04272 -15.82932 -15.41738 -15.37993 -14.89113 -14.69432 -14.26738 -13.82938 -13.80074 -13.68638 -13.22731 -13.21455 -12.97849 -12.89353 -12.72494 -12.61144 -12.39232 -12.26528 -12.12929 -11.75609 -11.64065 -11.61930 -11.44097 -11.17526 -10.95796 -10.76191 -10.70913 -10.37042 -10.12637 -9.02209 -7.94155 -5.21211 -0.04910 0.46727 1.41012 1.43609 1.49230 1.74289 1.92430 2.04857 2.52472 2.83065 2.99341 3.04609 3.38268 3.50058 3.69454 3.79426 3.79814 3.93077 4.01550 4.08583 4.10145 4.19925 4.40397 4.42756 4.50020 4.56683 4.58895 4.66557 4.69021 4.71157 4.77777 4.78919 4.85478 4.95476 4.97718 5.04386 5.16109 5.23860 5.29720 5.36366 5.57639 6.09855 6.26323 6.31155 6.33691 6.85942 6.98966 7.35894 8.04609 8.30744 9.27973 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011452 B = 0.003249 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2444.498904 B = 8616.783962 C = 9928.342882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.414 6.414 3 C 0.147 3.853 4 C -0.031 4.031 5 C -0.162 4.162 6 C -0.051 4.051 7 C 0.590 3.410 8 O -0.563 6.563 9 N -0.680 5.680 10 C 0.122 3.878 11 C 0.185 3.815 12 N -0.714 5.714 13 C -0.216 4.216 14 H 0.069 0.931 15 C -0.063 4.063 16 N -0.959 5.959 17 Si 0.950 3.050 18 H -0.300 1.300 19 H -0.297 1.297 20 H -0.272 1.272 21 C -0.149 4.149 22 C 0.074 3.926 23 O -0.395 6.395 24 C 0.067 3.933 25 C -0.145 4.145 26 N -0.339 5.339 27 O 0.137 5.863 28 H 0.095 0.905 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.101 0.899 32 H 0.118 0.882 33 H 0.200 0.800 34 H 0.407 0.593 35 H 0.076 0.924 36 H 0.048 0.952 37 H 0.376 0.624 38 H 0.247 0.753 39 H 0.082 0.918 40 H 0.063 0.937 41 H 0.035 0.965 42 H 0.103 0.897 43 H 0.036 0.964 44 H 0.112 0.888 45 H 0.071 0.929 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.813 -10.008 -3.529 18.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.334 6.334 3 C 0.070 3.930 4 C -0.094 4.094 5 C -0.185 4.185 6 C -0.208 4.208 7 C 0.374 3.626 8 O -0.442 6.442 9 N -0.329 5.329 10 C -0.003 4.003 11 C 0.094 3.906 12 N -0.354 5.354 13 C -0.348 4.348 14 H 0.087 0.913 15 C -0.255 4.255 16 N -0.609 5.609 17 Si 0.781 3.219 18 H -0.228 1.228 19 H -0.224 1.224 20 H -0.197 1.197 21 C -0.189 4.189 22 C -0.002 4.002 23 O -0.314 6.314 24 C -0.010 4.010 25 C -0.183 4.183 26 N -0.037 5.037 27 O 0.056 5.944 28 H 0.114 0.886 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.119 0.881 32 H 0.135 0.865 33 H 0.217 0.783 34 H 0.244 0.756 35 H 0.094 0.906 36 H 0.066 0.934 37 H 0.209 0.791 38 H 0.056 0.944 39 H 0.101 0.899 40 H 0.082 0.918 41 H 0.054 0.946 42 H 0.121 0.879 43 H 0.054 0.946 44 H 0.130 0.870 45 H 0.089 0.911 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.575 -10.256 -3.523 17.375 hybrid contribution -0.580 1.910 -0.192 2.006 sum -14.156 -8.345 -3.715 16.847 Atomic orbital electron populations 1.23021 0.77833 1.04272 1.01851 1.87926 1.22587 1.27021 1.95889 1.20938 0.80158 0.86206 1.05723 1.24618 0.96578 1.03687 0.84539 1.22718 0.88637 1.04371 1.02742 1.23592 0.97381 1.09376 0.90484 1.17100 0.82396 0.76930 0.86194 1.90721 1.87177 1.52862 1.13418 1.45645 1.05408 1.70647 1.11151 1.21886 0.82940 1.00719 0.94795 1.20077 0.92188 0.87532 0.90799 1.42525 1.87585 1.00233 1.05090 1.19233 1.38242 0.84399 0.92883 0.91344 1.25251 1.03893 1.00332 0.96073 1.69759 1.57759 1.28723 1.04697 0.85494 0.77041 0.81915 0.77463 1.22800 1.22406 1.19677 1.22430 0.95504 1.02325 0.98668 1.22398 0.98242 0.87129 0.92464 1.87808 1.41555 1.42246 1.59762 1.22540 0.83754 1.02164 0.92557 1.22327 0.99211 0.97446 0.99341 1.74258 0.98141 1.15381 1.15878 1.84766 1.11071 1.64499 1.34100 0.88620 0.92193 0.92009 0.88136 0.86454 0.78336 0.75645 0.90566 0.93387 0.79077 0.94370 0.89923 0.91793 0.94620 0.87877 0.94554 0.86959 0.91078 0.88888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 113.37 1.25 1.46 16 2 O -0.41 -6.79 10.69 -148.98 -1.59 -8.38 16 3 C 0.15 1.97 6.49 71.24 0.46 2.43 16 4 C -0.03 -0.71 7.10 25.01 0.18 -0.53 16 5 C -0.16 -4.36 10.92 22.60 0.25 -4.11 16 6 C -0.05 -1.76 7.19 42.96 0.31 -1.45 16 7 C 0.59 23.09 7.85 86.93 0.68 23.77 16 8 O -0.56 -24.01 16.95 -3.72 -0.06 -24.07 16 9 N -0.68 -25.90 5.16 -465.50 -2.40 -28.31 16 10 C 0.12 4.46 4.32 86.38 0.37 4.83 16 11 C 0.18 6.56 0.41 3.72 0.00 6.56 16 12 N -0.71 -31.80 3.77 -302.80 -1.14 -32.94 16 13 C -0.22 -11.04 8.70 84.03 0.73 -10.31 16 14 H 0.07 3.50 6.75 -2.91 -0.02 3.48 16 15 C -0.06 -3.45 5.50 84.86 0.47 -2.98 16 16 N -0.96 -56.16 13.07 21.65 0.28 -55.88 16 17 Si 0.95 46.04 29.55 68.60 2.03 48.07 16 18 H -0.30 -14.83 7.11 99.48 0.71 -14.12 16 19 H -0.30 -14.57 7.11 99.48 0.71 -13.87 16 20 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 21 C -0.15 -4.90 4.83 30.69 0.15 -4.75 16 22 C 0.07 2.45 6.68 72.01 0.48 2.93 16 23 O -0.39 -12.88 10.77 -148.98 -1.60 -14.48 16 24 C 0.07 2.02 6.67 72.01 0.48 2.50 16 25 C -0.15 -4.34 4.80 30.68 0.15 -4.19 16 26 N -0.34 -11.70 11.84 -49.51 -0.59 -12.29 16 27 O 0.14 3.92 11.18 71.90 0.80 4.72 16 28 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 0.33 8.14 -2.38 -0.02 0.31 16 30 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.20 4.41 8.06 -2.91 -0.02 4.38 16 34 H 0.41 15.87 7.07 -92.71 -0.66 15.21 16 35 H 0.08 2.48 8.14 -2.38 -0.02 2.46 16 36 H 0.05 2.00 7.54 -2.39 -0.02 1.98 16 37 H 0.38 18.31 6.72 -92.71 -0.62 17.69 16 38 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 39 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 40 H 0.06 2.28 7.12 -2.39 -0.02 2.26 16 41 H 0.04 1.40 7.75 -2.39 -0.02 1.39 16 42 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 43 H 0.04 1.28 7.09 -2.39 -0.02 1.26 16 44 H 0.11 2.76 8.14 -2.38 -0.02 2.74 16 45 H 0.07 2.12 7.21 -2.39 -0.02 2.11 16 46 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -69.47 381.81 1.43 -68.04 By element: Atomic # 1 Polarization: 39.62 SS G_CDS: -0.25 Total: 39.37 kcal Atomic # 6 Polarization: 10.19 SS G_CDS: 5.96 Total: 16.15 kcal Atomic # 7 Polarization: -125.57 SS G_CDS: -3.85 Total: -129.42 kcal Atomic # 8 Polarization: -39.76 SS G_CDS: -2.46 Total: -42.22 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -69.47 1.43 -68.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325027956.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.334 kcal (2) G-P(sol) polarization free energy of solvation -69.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds