Wall clock time and date at job start Sat Apr 11 2020 05:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.21229 * 2 1 4 4 C 1.52991 * 109.21547 * 240.62230 * 2 1 3 5 5 N 1.47274 * 108.18726 * 192.93512 * 4 2 1 6 6 C 1.34768 * 121.35703 * 241.23138 * 5 4 2 7 7 O 1.21347 * 120.00032 * 357.89339 * 6 5 4 8 8 C 1.49445 * 120.00314 * 177.89407 * 6 5 4 9 9 O 1.21354 * 119.99974 * 6.15075 * 8 6 5 10 10 N 1.34773 * 120.00288 * 186.15469 * 8 6 5 11 11 C 1.47425 * 125.64783 * 0.02562 * 10 8 6 12 12 C 1.54917 * 104.83109 * 204.09328 * 11 10 8 13 13 C 1.55149 * 101.58245 * 322.99059 * 12 11 10 14 14 O 1.42903 * 110.72199 * 276.96046 * 13 12 11 15 15 C 1.50702 * 110.72062 * 153.86706 * 13 12 11 16 16 H 1.07994 * 119.99830 * 359.97438 * 15 13 12 17 17 C 1.37878 * 120.00214 * 180.02562 * 15 13 12 18 18 N 1.31517 * 120.00010 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 120.00120 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47042 * 59.99866 * 19 17 15 21 21 H 1.48498 * 109.47440 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47284 * 300.00144 * 19 17 15 23 23 C 1.47028 * 125.64991 * 179.71344 * 10 8 6 24 24 C 1.47048 * 117.28769 * 61.50831 * 5 4 2 25 25 C 1.50439 * 108.89459 * 317.27401 * 24 5 4 26 26 O 1.21280 * 118.48550 * 192.69756 * 25 24 5 27 27 N 1.33384 * 123.02488 * 12.67342 * 25 24 5 28 28 C 1.46494 * 117.70287 * 175.69865 * 27 25 24 29 29 H 1.09000 * 109.46963 * 179.37840 * 1 2 3 30 30 H 1.09003 * 109.47072 * 299.37272 * 1 2 3 31 31 H 1.08996 * 109.47440 * 59.38173 * 1 2 3 32 32 H 1.09004 * 109.71954 * 73.26614 * 4 2 1 33 33 H 1.08997 * 109.76045 * 312.63210 * 4 2 1 34 34 H 1.08993 * 110.37099 * 322.93264 * 11 10 8 35 35 H 1.09003 * 110.36638 * 85.14964 * 11 10 8 36 36 H 1.08991 * 111.00323 * 81.07055 * 12 11 10 37 37 H 1.09000 * 111.00185 * 204.91817 * 12 11 10 38 38 H 0.96703 * 114.00263 * 179.97438 * 14 13 12 39 39 H 0.96997 * 119.99789 * 179.97438 * 18 17 15 40 40 H 1.08997 * 109.88132 * 298.39725 * 23 10 8 41 41 H 1.09006 * 109.87631 * 59.55849 * 23 10 8 42 42 H 1.08994 * 109.57146 * 77.08194 * 24 5 4 43 43 H 1.09003 * 109.56458 * 197.43695 * 24 5 4 44 44 H 1.08998 * 109.47542 * 270.01859 * 28 27 25 45 45 H 1.09001 * 109.47380 * 30.02736 * 28 27 25 46 46 H 1.09004 * 109.46491 * 150.02470 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8886 1.0293 0.0000 4 6 2.0335 -0.7087 -1.2589 5 7 3.4725 -0.9744 -1.0924 6 6 4.3850 -0.4449 -1.9310 7 8 4.0245 0.2358 -2.8686 8 6 5.8409 -0.6961 -1.7062 9 8 6.1970 -1.4655 -0.8379 10 7 6.7586 -0.0680 -2.4676 11 6 6.4669 0.8877 -3.5516 12 6 7.7102 0.8325 -4.4742 13 6 8.8567 0.6660 -3.4422 14 8 9.2408 1.9330 -2.9044 15 6 10.0402 -0.0266 -4.0672 16 1 10.0030 -0.3305 -5.1028 17 6 11.1701 -0.2733 -3.3165 18 7 11.2152 0.0963 -2.0552 19 14 12.6369 -1.1325 -4.0910 20 1 13.1349 -0.3272 -5.2350 21 1 13.7155 -1.2782 -3.0808 22 1 12.2260 -2.4757 -4.5730 23 6 8.2166 -0.2175 -2.3506 24 6 3.8725 -1.8460 0.0223 25 6 3.0781 -1.4707 1.2435 26 8 3.4256 -1.9129 2.3180 27 7 2.0094 -0.6738 1.1989 28 6 1.2655 -0.4620 2.4430 29 1 -0.3633 -1.0276 -0.0111 30 1 -0.3633 0.5041 0.8956 31 1 -0.3634 0.5234 -0.8843 32 1 1.8756 -0.0705 -2.1283 33 1 1.4987 -1.6492 -1.3912 34 1 5.5751 0.5810 -4.0981 35 1 6.3367 1.8916 -3.1474 36 1 7.6609 -0.0250 -5.1452 37 1 7.8215 1.7601 -5.0356 38 1 9.9544 1.8841 -2.2536 39 1 12.0100 -0.0777 -1.5270 40 1 8.5450 0.1115 -1.3647 41 1 8.4962 -1.2592 -2.5082 42 1 3.6731 -2.8856 -0.2373 43 1 4.9358 -1.7158 0.2240 44 1 0.4867 -1.2190 2.5341 45 1 1.9464 -0.5372 3.2908 46 1 0.8099 0.5282 2.4296 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327023133.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:42 Heat of formation + Delta-G solvation = -111.264352 kcal Electronic energy + Delta-G solvation = -30953.790143 eV Core-core repulsion = 26652.055573 eV Total energy + Delta-G solvation = -4301.734570 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.28750 -40.07572 -38.57499 -37.49381 -37.06657 -35.44529 -34.25112 -32.22230 -31.94488 -30.28023 -28.92275 -28.22947 -27.82863 -26.31841 -25.19891 -23.39296 -22.95194 -21.75073 -19.88521 -19.58263 -18.76873 -17.80459 -17.27849 -17.19087 -16.47611 -16.30268 -16.23101 -15.76193 -15.48392 -15.19766 -14.76347 -14.57826 -14.34436 -13.87101 -13.64559 -13.43580 -13.17925 -13.05834 -12.95990 -12.84320 -12.63451 -12.48909 -12.43643 -12.18687 -11.92392 -11.84589 -11.71197 -11.53807 -11.13424 -10.99953 -10.76879 -10.58933 -10.53312 -10.39432 -10.19613 -9.38885 -9.15317 -9.02039 -8.91737 -8.70251 -8.40337 -8.13853 -6.35005 -4.43878 1.54984 2.17738 2.43085 2.70771 3.19807 3.25844 3.27522 3.35675 3.49696 4.11145 4.21053 4.24004 4.35735 4.53084 4.65996 4.92677 4.98825 5.00544 5.09878 5.20264 5.26055 5.27870 5.40483 5.42865 5.55388 5.64372 5.66650 5.77401 5.81529 5.90599 6.01999 6.10180 6.21398 6.44238 6.69314 6.72790 6.76299 6.79236 7.13117 7.14731 7.25193 7.58013 7.67648 7.88052 7.91846 7.94721 8.25524 8.59578 9.25201 9.37701 10.72792 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021460 B = 0.002837 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.454756 B = 9865.507638 C =10570.368908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.126 3.874 3 H 0.080 0.920 4 C 0.099 3.901 5 N -0.596 5.596 6 C 0.521 3.479 7 O -0.510 6.510 8 C 0.507 3.493 9 O -0.527 6.527 10 N -0.567 5.567 11 C 0.094 3.906 12 C -0.120 4.120 13 C 0.249 3.751 14 O -0.585 6.585 15 C -0.538 4.538 16 H 0.068 0.932 17 C 0.070 3.930 18 N -0.896 5.896 19 Si 0.906 3.094 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.274 1.274 23 C 0.096 3.904 24 C 0.059 3.941 25 C 0.510 3.490 26 O -0.541 6.541 27 N -0.606 5.606 28 C 0.075 3.925 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.115 0.885 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.386 0.614 39 H 0.273 0.727 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.104 0.896 43 H 0.181 0.819 44 H 0.056 0.944 45 H 0.080 0.920 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.737 -0.051 2.705 20.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.022 3.978 3 H 0.098 0.902 4 C -0.024 4.024 5 N -0.332 5.332 6 C 0.304 3.696 7 O -0.385 6.385 8 C 0.290 3.710 9 O -0.408 6.408 10 N -0.298 5.298 11 C -0.028 4.028 12 C -0.158 4.158 13 C 0.208 3.792 14 O -0.395 6.395 15 C -0.576 4.576 16 H 0.086 0.914 17 C -0.133 4.133 18 N -0.536 5.536 19 Si 0.733 3.267 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.200 1.200 23 C -0.025 4.025 24 C -0.064 4.064 25 C 0.298 3.702 26 O -0.418 6.418 27 N -0.341 5.341 28 C -0.067 4.067 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.133 0.867 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.238 0.762 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.122 0.878 43 H 0.197 0.803 44 H 0.074 0.926 45 H 0.099 0.901 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -20.891 -0.119 2.973 21.102 hybrid contribution 1.042 -0.716 0.146 1.272 sum -19.850 -0.835 3.120 20.111 Atomic orbital electron populations 1.22175 0.93078 1.03265 1.03501 1.21370 0.95353 0.96872 0.84235 0.90227 1.22137 0.79975 1.01989 0.98283 1.48006 1.06335 1.48972 1.29894 1.20360 0.87419 0.79612 0.82170 1.90693 1.81161 1.37540 1.29085 1.19484 0.85903 0.82618 0.82989 1.90407 1.80223 1.37340 1.32873 1.48722 1.08424 1.40414 1.32246 1.22735 0.99590 0.92382 0.88094 1.22821 0.93334 1.02318 0.97323 1.19490 0.90971 0.81391 0.87321 1.86094 1.59038 1.31260 1.63086 1.21488 0.98880 1.39093 0.98167 0.91370 1.25088 0.98921 0.94567 0.94700 1.69555 1.30097 1.46862 1.07050 0.86418 0.81283 0.79972 0.79008 1.19934 1.21032 1.19983 1.23365 0.74099 1.02582 1.02446 1.23234 1.06153 0.95179 0.81871 1.20537 0.80005 0.78273 0.91392 1.90743 1.67879 1.53693 1.29450 1.47338 1.28523 1.47975 1.10231 1.21710 0.96719 1.01002 0.87295 0.91583 0.91187 0.90491 0.86672 0.89791 0.89101 0.91289 0.90414 0.90186 0.76153 0.91729 0.90963 0.90691 0.87783 0.80336 0.92581 0.90081 0.91204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.79 8.68 37.16 0.32 -0.47 16 2 C 0.13 1.02 3.50 -68.40 -0.24 0.78 16 3 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 4 C 0.10 0.89 5.83 -3.62 -0.02 0.87 16 5 N -0.60 -7.63 2.98 -174.66 -0.52 -8.15 16 6 C 0.52 8.20 7.74 -11.59 -0.09 8.11 16 7 O -0.51 -8.30 13.24 5.50 0.07 -8.23 16 8 C 0.51 9.56 7.84 -11.59 -0.09 9.47 16 9 O -0.53 -10.68 13.42 5.49 0.07 -10.61 16 10 N -0.57 -11.43 3.33 -171.01 -0.57 -12.00 16 11 C 0.09 1.73 6.16 -2.52 -0.02 1.71 16 12 C -0.12 -2.37 6.23 -24.58 -0.15 -2.52 16 13 C 0.25 5.86 0.86 -89.93 -0.08 5.78 16 14 O -0.58 -14.46 13.08 -35.23 -0.46 -14.92 16 15 C -0.54 -13.65 8.11 -34.44 -0.28 -13.93 16 16 H 0.07 1.70 7.76 -52.49 -0.41 1.29 16 17 C 0.07 1.79 5.28 -17.82 -0.09 1.69 16 18 N -0.90 -23.20 10.97 55.43 0.61 -22.59 16 19 Si 0.91 20.00 29.54 -169.99 -5.02 14.98 16 20 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 23 C 0.10 2.22 5.54 -3.05 -0.02 2.20 16 24 C 0.06 0.80 6.14 -5.02 -0.03 0.77 16 25 C 0.51 6.99 7.58 -11.73 -0.09 6.90 16 26 O -0.54 -9.20 16.18 5.56 0.09 -9.11 16 27 N -0.61 -6.35 3.12 -175.09 -0.55 -6.90 16 28 C 0.08 0.64 9.03 59.84 0.54 1.18 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.30 6.48 -51.93 -0.34 -0.04 16 31 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.12 1.00 7.06 -51.93 -0.37 0.64 16 33 H 0.08 0.61 8.09 -51.93 -0.42 0.19 16 34 H 0.09 1.55 6.01 -51.93 -0.31 1.23 16 35 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 36 H 0.08 1.46 8.02 -51.93 -0.42 1.05 16 37 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 38 H 0.39 9.83 6.98 45.56 0.32 10.15 16 39 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 40 H 0.07 1.81 8.07 -51.93 -0.42 1.39 16 41 H 0.07 1.85 7.81 -51.93 -0.41 1.44 16 42 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 43 H 0.18 2.95 4.35 -54.90 -0.24 2.71 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.08 0.84 7.10 -51.93 -0.37 0.48 16 46 H 0.07 0.42 6.91 -51.93 -0.36 0.07 16 LS Contribution 365.62 15.07 5.51 5.51 Total: -1.00 -29.93 365.62 -6.92 -36.86 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -5.83 Total: 12.63 kcal Atomic # 6 Polarization: 22.86 SS G_CDS: -0.33 Total: 22.53 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: -1.03 Total: -49.64 kcal Atomic # 8 Polarization: -42.64 SS G_CDS: -0.22 Total: -42.87 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.93 -6.92 -36.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327023133.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.408 kcal (2) G-P(sol) polarization free energy of solvation -29.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds