Wall clock time and date at job start Sat Apr 11 2020 05:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.21229 * 2 1 4 4 C 1.52991 * 109.21547 * 240.62230 * 2 1 3 5 5 N 1.47274 * 108.18726 * 192.93512 * 4 2 1 6 6 C 1.34768 * 121.35703 * 241.23138 * 5 4 2 7 7 O 1.21347 * 120.00032 * 357.89339 * 6 5 4 8 8 C 1.49445 * 120.00314 * 177.89407 * 6 5 4 9 9 O 1.21354 * 119.99974 * 6.15075 * 8 6 5 10 10 N 1.34773 * 120.00288 * 186.15469 * 8 6 5 11 11 C 1.47425 * 125.64783 * 0.02562 * 10 8 6 12 12 C 1.54917 * 104.83109 * 204.09328 * 11 10 8 13 13 C 1.55149 * 101.58245 * 322.99059 * 12 11 10 14 14 O 1.42903 * 110.72199 * 276.96046 * 13 12 11 15 15 C 1.50702 * 110.72062 * 153.86706 * 13 12 11 16 16 H 1.07994 * 119.99830 * 359.97438 * 15 13 12 17 17 C 1.37878 * 120.00214 * 180.02562 * 15 13 12 18 18 N 1.31517 * 120.00010 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 120.00120 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47042 * 59.99866 * 19 17 15 21 21 H 1.48498 * 109.47440 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47284 * 300.00144 * 19 17 15 23 23 C 1.47028 * 125.64991 * 179.71344 * 10 8 6 24 24 C 1.47048 * 117.28769 * 61.50831 * 5 4 2 25 25 C 1.50439 * 108.89459 * 317.27401 * 24 5 4 26 26 O 1.21280 * 118.48550 * 192.69756 * 25 24 5 27 27 N 1.33384 * 123.02488 * 12.67342 * 25 24 5 28 28 C 1.46494 * 117.70287 * 175.69865 * 27 25 24 29 29 H 1.09000 * 109.46963 * 179.37840 * 1 2 3 30 30 H 1.09003 * 109.47072 * 299.37272 * 1 2 3 31 31 H 1.08996 * 109.47440 * 59.38173 * 1 2 3 32 32 H 1.09004 * 109.71954 * 73.26614 * 4 2 1 33 33 H 1.08997 * 109.76045 * 312.63210 * 4 2 1 34 34 H 1.08993 * 110.37099 * 322.93264 * 11 10 8 35 35 H 1.09003 * 110.36638 * 85.14964 * 11 10 8 36 36 H 1.08991 * 111.00323 * 81.07055 * 12 11 10 37 37 H 1.09000 * 111.00185 * 204.91817 * 12 11 10 38 38 H 0.96703 * 114.00263 * 179.97438 * 14 13 12 39 39 H 0.96997 * 119.99789 * 179.97438 * 18 17 15 40 40 H 1.08997 * 109.88132 * 298.39725 * 23 10 8 41 41 H 1.09006 * 109.87631 * 59.55849 * 23 10 8 42 42 H 1.08994 * 109.57146 * 77.08194 * 24 5 4 43 43 H 1.09003 * 109.56458 * 197.43695 * 24 5 4 44 44 H 1.08998 * 109.47542 * 270.01859 * 28 27 25 45 45 H 1.09001 * 109.47380 * 30.02736 * 28 27 25 46 46 H 1.09004 * 109.46491 * 150.02470 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8886 1.0293 0.0000 4 6 2.0335 -0.7087 -1.2589 5 7 3.4725 -0.9744 -1.0924 6 6 4.3850 -0.4449 -1.9310 7 8 4.0245 0.2358 -2.8686 8 6 5.8409 -0.6961 -1.7062 9 8 6.1970 -1.4655 -0.8379 10 7 6.7586 -0.0680 -2.4676 11 6 6.4669 0.8877 -3.5516 12 6 7.7102 0.8325 -4.4742 13 6 8.8567 0.6660 -3.4422 14 8 9.2408 1.9330 -2.9044 15 6 10.0402 -0.0266 -4.0672 16 1 10.0030 -0.3305 -5.1028 17 6 11.1701 -0.2733 -3.3165 18 7 11.2152 0.0963 -2.0552 19 14 12.6369 -1.1325 -4.0910 20 1 13.1349 -0.3272 -5.2350 21 1 13.7155 -1.2782 -3.0808 22 1 12.2260 -2.4757 -4.5730 23 6 8.2166 -0.2175 -2.3506 24 6 3.8725 -1.8460 0.0223 25 6 3.0781 -1.4707 1.2435 26 8 3.4256 -1.9129 2.3180 27 7 2.0094 -0.6738 1.1989 28 6 1.2655 -0.4620 2.4430 29 1 -0.3633 -1.0276 -0.0111 30 1 -0.3633 0.5041 0.8956 31 1 -0.3634 0.5234 -0.8843 32 1 1.8756 -0.0705 -2.1283 33 1 1.4987 -1.6492 -1.3912 34 1 5.5751 0.5810 -4.0981 35 1 6.3367 1.8916 -3.1474 36 1 7.6609 -0.0250 -5.1452 37 1 7.8215 1.7601 -5.0356 38 1 9.9544 1.8841 -2.2536 39 1 12.0100 -0.0777 -1.5270 40 1 8.5450 0.1115 -1.3647 41 1 8.4962 -1.2592 -2.5082 42 1 3.6731 -2.8856 -0.2373 43 1 4.9358 -1.7158 0.2240 44 1 0.4867 -1.2190 2.5341 45 1 1.9464 -0.5372 3.2908 46 1 0.8099 0.5282 2.4296 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327023133.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:41 Heat of formation + Delta-G solvation = -134.284326 kcal Electronic energy + Delta-G solvation = -30954.788364 eV Core-core repulsion = 26652.055573 eV Total energy + Delta-G solvation = -4302.732791 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.43945 -41.32715 -39.99391 -39.09335 -38.07806 -36.69025 -35.81995 -34.18470 -32.71427 -31.94634 -29.94780 -29.81023 -28.76293 -27.73594 -26.53954 -24.80152 -23.79846 -23.08352 -21.49925 -20.98050 -19.82546 -19.18600 -18.89410 -18.34920 -17.83489 -17.52926 -17.35423 -17.05580 -16.84643 -16.61650 -16.28453 -15.81588 -15.73635 -14.93402 -14.90031 -14.78911 -14.70280 -14.48787 -14.19150 -14.06917 -13.69416 -13.59470 -13.48052 -13.34487 -13.11613 -12.90384 -12.85899 -12.64078 -12.51767 -12.44132 -12.33871 -12.32230 -12.23207 -11.92779 -11.53899 -11.18884 -10.67067 -10.45407 -10.26842 -10.14040 -9.84023 -9.75218 -8.28314 -6.44101 0.18237 0.98358 1.36710 1.44174 1.44881 1.52728 1.78740 1.97846 2.16325 2.38180 2.92724 2.98846 3.25330 3.54308 3.77571 3.92371 3.99481 4.04165 4.12430 4.16726 4.30420 4.34025 4.43647 4.49548 4.55506 4.57826 4.63558 4.75126 4.80217 4.85761 4.91087 4.96086 5.02443 5.08908 5.15210 5.22410 5.31678 5.38640 5.43839 5.63180 5.72922 5.99566 6.18080 6.25740 6.45424 6.63363 6.77275 6.90421 7.27730 7.37261 8.77808 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021460 B = 0.002837 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.454756 B = 9865.507638 C =10570.368908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.123 3.877 3 H 0.078 0.922 4 C 0.095 3.905 5 N -0.585 5.585 6 C 0.529 3.471 7 O -0.513 6.513 8 C 0.499 3.501 9 O -0.547 6.547 10 N -0.578 5.578 11 C 0.104 3.896 12 C -0.114 4.114 13 C 0.234 3.766 14 O -0.589 6.589 15 C -0.557 4.557 16 H 0.070 0.930 17 C 0.027 3.973 18 N -0.917 5.917 19 Si 0.965 3.035 20 H -0.269 1.269 21 H -0.285 1.285 22 H -0.272 1.272 23 C 0.114 3.886 24 C 0.063 3.937 25 C 0.507 3.493 26 O -0.584 6.584 27 N -0.600 5.600 28 C 0.072 3.928 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.125 0.875 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.379 0.621 39 H 0.272 0.728 40 H 0.042 0.958 41 H 0.050 0.950 42 H 0.123 0.877 43 H 0.150 0.850 44 H 0.073 0.927 45 H 0.056 0.944 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.627 0.176 1.543 23.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.020 3.980 3 H 0.096 0.904 4 C -0.026 4.026 5 N -0.320 5.320 6 C 0.312 3.688 7 O -0.389 6.389 8 C 0.284 3.716 9 O -0.429 6.429 10 N -0.309 5.309 11 C -0.017 4.017 12 C -0.151 4.151 13 C 0.193 3.807 14 O -0.399 6.399 15 C -0.595 4.595 16 H 0.088 0.912 17 C -0.174 4.174 18 N -0.556 5.556 19 Si 0.790 3.210 20 H -0.194 1.194 21 H -0.210 1.210 22 H -0.197 1.197 23 C -0.009 4.009 24 C -0.062 4.062 25 C 0.295 3.705 26 O -0.464 6.464 27 N -0.332 5.332 28 C -0.070 4.070 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.114 0.886 32 H 0.143 0.857 33 H 0.127 0.873 34 H 0.129 0.871 35 H 0.088 0.912 36 H 0.105 0.895 37 H 0.110 0.890 38 H 0.230 0.770 39 H 0.082 0.918 40 H 0.060 0.940 41 H 0.069 0.931 42 H 0.141 0.859 43 H 0.166 0.834 44 H 0.091 0.909 45 H 0.075 0.925 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -23.867 0.133 1.796 23.935 hybrid contribution 1.854 -0.786 0.579 2.095 sum -22.013 -0.653 2.375 22.151 Atomic orbital electron populations 1.22150 0.89871 1.04139 1.04991 1.21597 0.97719 0.96123 0.82604 0.90371 1.22537 0.77118 1.03723 0.99210 1.47997 1.07675 1.47708 1.28579 1.19594 0.86034 0.80291 0.82915 1.90684 1.80735 1.38081 1.29420 1.20251 0.87518 0.81761 0.82107 1.90443 1.81253 1.37846 1.33355 1.48740 1.07321 1.41483 1.33351 1.22742 0.99561 0.92068 0.87318 1.22821 0.92162 1.03330 0.96836 1.19710 0.91829 0.80871 0.88255 1.86083 1.58751 1.32112 1.62917 1.21805 0.99862 1.39439 0.98405 0.91210 1.25807 1.01299 0.95172 0.95105 1.69657 1.30531 1.47507 1.07937 0.85500 0.78319 0.78985 0.78209 1.19369 1.21005 1.19716 1.22849 0.76467 1.00823 1.00742 1.22995 1.04501 0.96326 0.82333 1.20487 0.80760 0.78718 0.90565 1.90725 1.69292 1.55755 1.30659 1.47466 1.27407 1.46407 1.11918 1.21874 0.96298 1.03319 0.85467 0.91017 0.90116 0.88624 0.85668 0.87261 0.87052 0.91225 0.89481 0.89024 0.76973 0.91839 0.93972 0.93146 0.85938 0.83379 0.90850 0.92524 0.88253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 8.68 71.98 0.62 -0.18 16 2 C 0.12 1.57 3.50 45.15 0.16 1.73 16 3 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 4 C 0.09 1.39 5.83 86.23 0.50 1.89 16 5 N -0.58 -13.99 2.98 -824.86 -2.46 -16.44 16 6 C 0.53 16.01 7.74 87.27 0.68 16.68 16 7 O -0.51 -15.55 13.24 -3.24 -0.04 -15.59 16 8 C 0.50 19.06 7.84 87.27 0.68 19.74 16 9 O -0.55 -23.03 13.42 -3.26 -0.04 -23.07 16 10 N -0.58 -23.59 3.33 -813.32 -2.70 -26.30 16 11 C 0.10 3.73 6.16 86.86 0.53 4.27 16 12 C -0.11 -4.41 6.23 31.99 0.20 -4.21 16 13 C 0.23 11.20 0.86 -10.35 -0.01 11.19 16 14 O -0.59 -29.80 13.08 -148.98 -1.95 -31.75 16 15 C -0.56 -28.62 8.11 25.60 0.21 -28.41 16 16 H 0.07 3.47 7.76 -2.91 -0.02 3.45 16 17 C 0.03 1.39 5.28 84.65 0.45 1.83 16 18 N -0.92 -48.81 10.97 21.45 0.24 -48.58 16 19 Si 0.96 41.30 29.54 68.60 2.03 43.33 16 20 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 21 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 22 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 23 C 0.11 5.47 5.54 86.73 0.48 5.95 16 24 C 0.06 1.66 6.14 85.45 0.52 2.19 16 25 C 0.51 13.63 7.58 87.79 0.67 14.29 16 26 O -0.58 -20.28 16.18 -3.03 -0.05 -20.33 16 27 N -0.60 -11.34 3.12 -827.04 -2.58 -13.92 16 28 C 0.07 1.07 9.03 127.77 1.15 2.22 16 29 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.08 0.31 6.48 -2.39 -0.02 0.29 16 31 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 32 H 0.13 1.69 7.06 -2.38 -0.02 1.67 16 33 H 0.11 1.13 8.09 -2.39 -0.02 1.11 16 34 H 0.11 3.55 6.01 -2.39 -0.01 3.54 16 35 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.09 3.19 8.02 -2.39 -0.02 3.17 16 37 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 38 H 0.38 20.04 6.98 -74.06 -0.52 19.52 16 39 H 0.27 13.93 8.31 -92.71 -0.77 13.15 16 40 H 0.04 2.23 8.07 -2.39 -0.02 2.21 16 41 H 0.05 2.61 7.81 -2.38 -0.02 2.60 16 42 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 43 H 0.15 5.07 4.35 -49.44 -0.21 4.86 16 44 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.06 1.15 7.10 -2.39 -0.02 1.13 16 46 H 0.10 0.87 6.91 -2.38 -0.02 0.86 16 Total: -1.00 -67.15 365.62 -0.41 -67.56 By element: Atomic # 1 Polarization: 35.61 SS G_CDS: 0.30 Total: 35.91 kcal Atomic # 6 Polarization: 42.33 SS G_CDS: 6.85 Total: 49.18 kcal Atomic # 7 Polarization: -97.73 SS G_CDS: -7.50 Total: -105.23 kcal Atomic # 8 Polarization: -88.66 SS G_CDS: -2.08 Total: -90.75 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Total: -67.15 -0.41 -67.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327023133.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.724 kcal (2) G-P(sol) polarization free energy of solvation -67.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds