Wall clock time and date at job start Sat Apr 11 2020 05:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.21241 * 2 1 4 4 C 1.52510 * 109.26482 * 240.73446 * 2 1 3 5 5 N 1.47267 * 108.44413 * 193.08103 * 4 2 1 6 6 C 1.34782 * 121.35046 * 241.51982 * 5 4 2 7 7 O 1.21346 * 120.00079 * 6.44959 * 6 5 4 8 8 C 1.49450 * 119.99828 * 186.45272 * 6 5 4 9 9 O 1.21352 * 119.99797 * 6.36243 * 8 6 5 10 10 N 1.34771 * 119.99967 * 186.09292 * 8 6 5 11 11 C 1.47020 * 125.64988 * 0.02562 * 10 8 6 12 12 C 1.54319 * 107.27541 * 181.02482 * 11 10 8 13 13 C 1.55160 * 102.94349 * 22.18788 * 12 11 10 14 14 O 1.42907 * 110.99766 * 82.57214 * 13 12 11 15 15 C 1.50690 * 111.00875 * 206.42525 * 13 12 11 16 16 H 1.08004 * 120.00406 * 0.02562 * 15 13 12 17 17 C 1.37875 * 119.99883 * 180.02562 * 15 13 12 18 18 N 1.31509 * 120.00444 * 359.97438 * 17 15 13 19 19 Si 1.86805 * 119.99754 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47342 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47165 * 120.00112 * 19 17 15 22 22 H 1.48500 * 109.47387 * 239.99825 * 19 17 15 23 23 C 1.47422 * 125.64910 * 179.71221 * 10 8 6 24 24 C 1.47050 * 117.29523 * 61.24066 * 5 4 2 25 25 C 1.50442 * 108.89004 * 317.51551 * 24 5 4 26 26 O 1.21281 * 118.48392 * 192.72756 * 25 24 5 27 27 N 1.33380 * 123.02328 * 12.70679 * 25 24 5 28 28 C 1.46495 * 117.70558 * 175.65896 * 27 25 24 29 29 H 1.08993 * 109.46875 * 300.61715 * 1 2 3 30 30 H 1.08998 * 109.47028 * 60.62058 * 1 2 3 31 31 H 1.09008 * 109.46802 * 180.61945 * 1 2 3 32 32 H 1.08995 * 109.60374 * 73.31936 * 4 2 1 33 33 H 1.09007 * 109.58630 * 312.82490 * 4 2 1 34 34 H 1.09000 * 109.88357 * 300.44267 * 11 10 8 35 35 H 1.09001 * 109.88162 * 61.60468 * 11 10 8 36 36 H 1.08993 * 110.72512 * 140.55676 * 12 11 10 37 37 H 1.09010 * 110.71952 * 263.83280 * 12 11 10 38 38 H 0.96705 * 113.99491 * 179.97438 * 14 13 12 39 39 H 0.96996 * 120.00443 * 179.97438 * 18 17 15 40 40 H 1.08998 * 110.36973 * 274.74863 * 23 10 8 41 41 H 1.09000 * 110.36819 * 37.07251 * 23 10 8 42 42 H 1.09001 * 109.56687 * 77.33802 * 24 5 4 43 43 H 1.09000 * 109.56744 * 197.57274 * 24 5 4 44 44 H 1.09000 * 109.47093 * 359.97438 * 28 27 25 45 45 H 1.08998 * 109.47308 * 119.99801 * 28 27 25 46 46 H 1.09003 * 109.47211 * 240.00313 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8887 1.0292 0.0000 4 6 2.0332 -0.7038 -1.2559 5 7 3.4715 -0.9752 -1.0934 6 6 4.3846 -0.4410 -1.9286 7 8 4.0422 0.3708 -2.7629 8 6 5.8189 -0.8487 -1.8270 9 8 6.1436 -1.7429 -1.0736 10 7 6.7508 -0.2271 -2.5763 11 6 6.4965 0.8630 -3.5294 12 6 7.8501 1.2380 -4.1687 13 6 8.7010 -0.0419 -3.9564 14 8 8.4297 -1.0113 -4.9708 15 6 10.1705 0.2883 -3.9072 16 1 10.4979 1.3119 -4.0144 17 6 11.0971 -0.7163 -3.7252 18 7 10.6986 -1.9627 -3.5941 19 14 12.9187 -0.3070 -3.6648 20 1 13.1032 1.1566 -3.8355 21 1 13.4772 -0.7263 -2.3542 22 1 13.6241 -1.0258 -4.7561 23 6 8.1950 -0.5231 -2.5711 24 6 3.8714 -1.8475 0.0208 25 6 3.0778 -1.4719 1.2425 26 8 3.4258 -1.9142 2.3168 27 7 2.0094 -0.6747 1.1985 28 6 1.2657 -0.4632 2.4428 29 1 -0.3633 0.5234 0.8843 30 1 -0.3633 0.5042 -0.8955 31 1 -0.3633 -1.0277 0.0111 32 1 1.8756 -0.0621 -2.1227 33 1 1.4947 -1.6421 -1.3896 34 1 5.8029 0.5272 -4.3003 35 1 6.0826 1.7246 -3.0054 36 1 7.7296 1.4492 -5.2311 37 1 8.2974 2.0882 -3.6536 38 1 8.9387 -1.8285 -4.8800 39 1 11.3505 -2.6695 -3.4665 40 1 8.6919 0.0261 -1.7714 41 1 8.3623 -1.5942 -2.4577 42 1 3.6713 -2.8869 -0.2393 43 1 4.9353 -1.7196 0.2209 44 1 1.7368 -1.0270 3.2479 45 1 1.2685 0.5979 2.6919 46 1 0.2382 -0.8036 2.3143 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327023136.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:45 Heat of formation + Delta-G solvation = -115.757592 kcal Electronic energy + Delta-G solvation = -30950.799380 eV Core-core repulsion = 26648.869968 eV Total energy + Delta-G solvation = -4301.929412 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.28132 -40.06110 -38.55598 -37.40911 -37.08497 -35.41746 -34.22367 -32.20731 -31.96870 -30.32778 -28.94224 -28.22117 -27.83725 -26.28999 -25.19530 -23.40505 -22.94721 -21.66771 -19.85845 -19.61427 -18.67951 -17.83413 -17.31255 -17.19451 -16.45295 -16.30016 -16.17462 -15.77359 -15.37615 -15.16176 -14.72344 -14.57640 -14.39147 -13.88743 -13.66621 -13.57676 -13.16426 -13.12140 -12.91772 -12.83672 -12.55621 -12.39068 -12.35005 -12.21762 -11.92237 -11.72491 -11.67525 -11.58628 -11.11213 -11.02437 -10.81068 -10.59624 -10.49416 -10.40419 -10.22685 -9.45828 -9.15985 -9.09978 -8.91945 -8.73432 -8.47336 -7.97506 -6.35156 -4.44611 1.59321 2.19651 2.38551 2.69392 3.16756 3.26174 3.29301 3.38035 3.53684 4.09675 4.20849 4.24312 4.41035 4.52106 4.66638 4.92367 5.00538 5.02165 5.13351 5.18851 5.25550 5.27556 5.40117 5.42177 5.53401 5.63925 5.65793 5.73118 5.80006 5.92667 5.99314 6.09577 6.23297 6.44622 6.67323 6.71058 6.75777 6.81971 7.10606 7.12500 7.25259 7.58355 7.68538 7.87356 7.92190 7.92987 8.29502 8.59594 9.25489 9.40226 10.72224 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022320 B = 0.002802 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.207006 B = 9992.184912 C =10716.049440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.127 3.873 3 H 0.080 0.920 4 C 0.100 3.900 5 N -0.599 5.599 6 C 0.519 3.481 7 O -0.508 6.508 8 C 0.508 3.492 9 O -0.530 6.530 10 N -0.568 5.568 11 C 0.109 3.891 12 C -0.122 4.122 13 C 0.250 3.750 14 O -0.582 6.582 15 C -0.537 4.537 16 H 0.069 0.931 17 C 0.070 3.930 18 N -0.895 5.895 19 Si 0.906 3.094 20 H -0.271 1.271 21 H -0.281 1.281 22 H -0.281 1.281 23 C 0.088 3.912 24 C 0.080 3.920 25 C 0.509 3.491 26 O -0.542 6.542 27 N -0.605 5.605 28 C 0.067 3.933 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.115 0.885 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.386 0.614 39 H 0.272 0.728 40 H 0.070 0.930 41 H 0.088 0.912 42 H 0.107 0.893 43 H 0.164 0.836 44 H 0.091 0.909 45 H 0.059 0.941 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.601 3.752 5.920 20.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.022 3.978 3 H 0.098 0.902 4 C -0.023 4.023 5 N -0.335 5.335 6 C 0.303 3.697 7 O -0.382 6.382 8 C 0.290 3.710 9 O -0.410 6.410 10 N -0.299 5.299 11 C -0.013 4.013 12 C -0.160 4.160 13 C 0.209 3.791 14 O -0.392 6.392 15 C -0.575 4.575 16 H 0.088 0.912 17 C -0.133 4.133 18 N -0.534 5.534 19 Si 0.733 3.267 20 H -0.195 1.195 21 H -0.207 1.207 22 H -0.207 1.207 23 C -0.032 4.032 24 C -0.045 4.045 25 C 0.297 3.703 26 O -0.419 6.419 27 N -0.339 5.339 28 C -0.076 4.076 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.133 0.867 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.239 0.761 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.107 0.893 42 H 0.125 0.875 43 H 0.181 0.819 44 H 0.110 0.890 45 H 0.077 0.923 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -19.768 3.751 6.229 21.063 hybrid contribution 1.150 -0.324 0.303 1.232 sum -18.618 3.427 6.532 20.027 Atomic orbital electron populations 1.22145 0.93132 1.03211 1.03494 1.21259 0.95366 0.96932 0.84202 0.90214 1.22034 0.79951 1.01981 0.98340 1.47966 1.06371 1.49137 1.30062 1.20432 0.87188 0.80943 0.81128 1.90730 1.80948 1.31303 1.35259 1.19463 0.85515 0.83672 0.82342 1.90573 1.81079 1.30819 1.38544 1.48665 1.09345 1.34167 1.37693 1.22189 0.98721 0.88629 0.91775 1.22724 0.93475 0.98924 1.00853 1.19641 0.92261 0.84671 0.82548 1.86091 1.69481 1.31223 1.52448 1.21531 0.90149 0.94747 1.51068 0.91240 1.25096 1.00068 0.94887 0.93223 1.69556 1.35244 0.99758 1.48873 0.86313 0.83816 0.78756 0.77819 1.19538 1.20725 1.20700 1.23629 0.74612 1.03102 1.01890 1.22778 1.04362 0.95575 0.81765 1.20577 0.80263 0.78044 0.91377 1.90735 1.67657 1.54024 1.29455 1.47297 1.28519 1.47781 1.10341 1.21795 0.96350 1.01912 0.87507 0.91216 0.90469 0.91562 0.86699 0.89772 0.90788 0.91893 0.90389 0.90376 0.76137 0.91825 0.91203 0.89342 0.87499 0.81947 0.89022 0.92258 0.91893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.79 8.25 37.16 0.31 -0.48 16 2 C 0.13 1.01 3.54 -68.64 -0.24 0.77 16 3 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 4 C 0.10 0.91 5.80 -3.87 -0.02 0.89 16 5 N -0.60 -7.78 2.99 -174.94 -0.52 -8.31 16 6 C 0.52 8.37 7.73 -11.58 -0.09 8.28 16 7 O -0.51 -8.53 13.67 5.50 0.08 -8.46 16 8 C 0.51 9.74 7.77 -11.59 -0.09 9.65 16 9 O -0.53 -10.88 13.54 5.49 0.07 -10.81 16 10 N -0.57 -11.55 3.32 -170.89 -0.57 -12.12 16 11 C 0.11 2.02 5.50 -3.07 -0.02 2.00 16 12 C -0.12 -2.40 6.12 -24.90 -0.15 -2.55 16 13 C 0.25 5.89 0.89 -89.50 -0.08 5.81 16 14 O -0.58 -14.64 13.19 -35.23 -0.46 -15.11 16 15 C -0.54 -13.52 8.25 -34.45 -0.28 -13.81 16 16 H 0.07 1.72 7.76 -52.48 -0.41 1.31 16 17 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 18 N -0.90 -23.14 10.72 55.43 0.59 -22.55 16 19 Si 0.91 19.87 29.54 -169.99 -5.02 14.85 16 20 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 21 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 23 C 0.09 2.03 5.65 -2.41 -0.01 2.02 16 24 C 0.08 1.07 5.86 -5.02 -0.03 1.04 16 25 C 0.51 6.83 7.58 -11.73 -0.09 6.75 16 26 O -0.54 -8.99 15.97 5.56 0.09 -8.90 16 27 N -0.61 -6.21 3.12 -175.37 -0.55 -6.76 16 28 C 0.07 0.55 9.36 59.84 0.56 1.11 16 29 H 0.07 0.30 6.90 -51.93 -0.36 -0.06 16 30 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.32 8.14 -51.92 -0.42 -0.10 16 32 H 0.11 1.03 7.09 -51.93 -0.37 0.66 16 33 H 0.08 0.63 8.08 -51.92 -0.42 0.21 16 34 H 0.07 1.38 7.45 -51.93 -0.39 1.00 16 35 H 0.06 1.05 7.83 -51.93 -0.41 0.65 16 36 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 37 H 0.08 1.43 8.01 -51.92 -0.42 1.01 16 38 H 0.39 10.02 6.93 45.56 0.32 10.34 16 39 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 40 H 0.07 1.62 8.03 -51.93 -0.42 1.20 16 41 H 0.09 2.26 7.64 -51.93 -0.40 1.86 16 42 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.16 2.64 4.91 -52.28 -0.26 2.38 16 44 H 0.09 0.93 6.59 -51.93 -0.34 0.59 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.06 0.38 6.90 -51.93 -0.36 0.02 16 LS Contribution 366.24 15.07 5.52 5.52 Total: -1.00 -30.05 366.24 -7.00 -37.04 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -5.89 Total: 12.44 kcal Atomic # 6 Polarization: 23.49 SS G_CDS: -0.34 Total: 23.16 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: -1.04 Total: -49.73 kcal Atomic # 8 Polarization: -43.05 SS G_CDS: -0.23 Total: -43.27 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.05 -7.00 -37.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327023136.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.713 kcal (2) G-P(sol) polarization free energy of solvation -30.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds