Wall clock time and date at job start Sat Apr 11 2020 05:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.21241 * 2 1 4 4 C 1.52510 * 109.26482 * 240.73446 * 2 1 3 5 5 N 1.47267 * 108.44413 * 193.08103 * 4 2 1 6 6 C 1.34782 * 121.35046 * 241.51982 * 5 4 2 7 7 O 1.21346 * 120.00079 * 6.44959 * 6 5 4 8 8 C 1.49450 * 119.99828 * 186.45272 * 6 5 4 9 9 O 1.21352 * 119.99797 * 6.36243 * 8 6 5 10 10 N 1.34771 * 119.99967 * 186.09292 * 8 6 5 11 11 C 1.47020 * 125.64988 * 0.02562 * 10 8 6 12 12 C 1.54319 * 107.27541 * 181.02482 * 11 10 8 13 13 C 1.55160 * 102.94349 * 22.18788 * 12 11 10 14 14 O 1.42907 * 110.99766 * 82.57214 * 13 12 11 15 15 C 1.50690 * 111.00875 * 206.42525 * 13 12 11 16 16 H 1.08004 * 120.00406 * 0.02562 * 15 13 12 17 17 C 1.37875 * 119.99883 * 180.02562 * 15 13 12 18 18 N 1.31509 * 120.00444 * 359.97438 * 17 15 13 19 19 Si 1.86805 * 119.99754 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47342 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47165 * 120.00112 * 19 17 15 22 22 H 1.48500 * 109.47387 * 239.99825 * 19 17 15 23 23 C 1.47422 * 125.64910 * 179.71221 * 10 8 6 24 24 C 1.47050 * 117.29523 * 61.24066 * 5 4 2 25 25 C 1.50442 * 108.89004 * 317.51551 * 24 5 4 26 26 O 1.21281 * 118.48392 * 192.72756 * 25 24 5 27 27 N 1.33380 * 123.02328 * 12.70679 * 25 24 5 28 28 C 1.46495 * 117.70558 * 175.65896 * 27 25 24 29 29 H 1.08993 * 109.46875 * 300.61715 * 1 2 3 30 30 H 1.08998 * 109.47028 * 60.62058 * 1 2 3 31 31 H 1.09008 * 109.46802 * 180.61945 * 1 2 3 32 32 H 1.08995 * 109.60374 * 73.31936 * 4 2 1 33 33 H 1.09007 * 109.58630 * 312.82490 * 4 2 1 34 34 H 1.09000 * 109.88357 * 300.44267 * 11 10 8 35 35 H 1.09001 * 109.88162 * 61.60468 * 11 10 8 36 36 H 1.08993 * 110.72512 * 140.55676 * 12 11 10 37 37 H 1.09010 * 110.71952 * 263.83280 * 12 11 10 38 38 H 0.96705 * 113.99491 * 179.97438 * 14 13 12 39 39 H 0.96996 * 120.00443 * 179.97438 * 18 17 15 40 40 H 1.08998 * 110.36973 * 274.74863 * 23 10 8 41 41 H 1.09000 * 110.36819 * 37.07251 * 23 10 8 42 42 H 1.09001 * 109.56687 * 77.33802 * 24 5 4 43 43 H 1.09000 * 109.56744 * 197.57274 * 24 5 4 44 44 H 1.09000 * 109.47093 * 359.97438 * 28 27 25 45 45 H 1.08998 * 109.47308 * 119.99801 * 28 27 25 46 46 H 1.09003 * 109.47211 * 240.00313 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8887 1.0292 0.0000 4 6 2.0332 -0.7038 -1.2559 5 7 3.4715 -0.9752 -1.0934 6 6 4.3846 -0.4410 -1.9286 7 8 4.0422 0.3708 -2.7629 8 6 5.8189 -0.8487 -1.8270 9 8 6.1436 -1.7429 -1.0736 10 7 6.7508 -0.2271 -2.5763 11 6 6.4965 0.8630 -3.5294 12 6 7.8501 1.2380 -4.1687 13 6 8.7010 -0.0419 -3.9564 14 8 8.4297 -1.0113 -4.9708 15 6 10.1705 0.2883 -3.9072 16 1 10.4979 1.3119 -4.0144 17 6 11.0971 -0.7163 -3.7252 18 7 10.6986 -1.9627 -3.5941 19 14 12.9187 -0.3070 -3.6648 20 1 13.1032 1.1566 -3.8355 21 1 13.4772 -0.7263 -2.3542 22 1 13.6241 -1.0258 -4.7561 23 6 8.1950 -0.5231 -2.5711 24 6 3.8714 -1.8475 0.0208 25 6 3.0778 -1.4719 1.2425 26 8 3.4258 -1.9142 2.3168 27 7 2.0094 -0.6747 1.1985 28 6 1.2657 -0.4632 2.4428 29 1 -0.3633 0.5234 0.8843 30 1 -0.3633 0.5042 -0.8955 31 1 -0.3633 -1.0277 0.0111 32 1 1.8756 -0.0621 -2.1227 33 1 1.4947 -1.6421 -1.3896 34 1 5.8029 0.5272 -4.3003 35 1 6.0826 1.7246 -3.0054 36 1 7.7296 1.4492 -5.2311 37 1 8.2974 2.0882 -3.6536 38 1 8.9387 -1.8285 -4.8800 39 1 11.3505 -2.6695 -3.4665 40 1 8.6919 0.0261 -1.7714 41 1 8.3623 -1.5942 -2.4577 42 1 3.6713 -2.8869 -0.2393 43 1 4.9353 -1.7196 0.2209 44 1 1.7368 -1.0270 3.2479 45 1 1.2685 0.5979 2.6919 46 1 0.2382 -0.8036 2.3143 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327023136.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:44 Heat of formation + Delta-G solvation = -138.664986 kcal Electronic energy + Delta-G solvation = -30951.792719 eV Core-core repulsion = 26648.869968 eV Total energy + Delta-G solvation = -4302.922751 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.41865 -41.32628 -39.98141 -39.01484 -38.09145 -36.64903 -35.82436 -34.16501 -32.73431 -31.99666 -29.96329 -29.77738 -28.78362 -27.70993 -26.52557 -24.80445 -23.78326 -23.01491 -21.53011 -20.92721 -19.76432 -19.20947 -18.90934 -18.35931 -17.80501 -17.48599 -17.28905 -17.04666 -16.85696 -16.59809 -16.24742 -15.92233 -15.69729 -15.08005 -14.83933 -14.74985 -14.64350 -14.46699 -14.19327 -14.01352 -13.70780 -13.51570 -13.44287 -13.29293 -13.06237 -12.91018 -12.87061 -12.63157 -12.53658 -12.45432 -12.34703 -12.27700 -12.12742 -12.10902 -11.51617 -11.25340 -10.70264 -10.54375 -10.29479 -10.11346 -9.84368 -9.63846 -8.27097 -6.43428 0.20788 1.00478 1.33651 1.42322 1.46239 1.56536 1.78689 1.97331 2.18778 2.38856 2.96845 3.00014 3.22953 3.55460 3.76412 3.90710 3.98863 4.06758 4.12557 4.14464 4.31194 4.32500 4.43059 4.52288 4.56564 4.64059 4.65677 4.73087 4.80894 4.87349 4.89955 4.97282 5.02068 5.05310 5.15953 5.21506 5.33957 5.38692 5.42854 5.62433 5.75032 6.00574 6.16548 6.24155 6.45665 6.65156 6.79605 6.88572 7.29107 7.38632 8.78959 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022320 B = 0.002802 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.207006 B = 9992.184912 C =10716.049440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.125 3.875 3 H 0.080 0.920 4 C 0.095 3.905 5 N -0.588 5.588 6 C 0.527 3.473 7 O -0.514 6.514 8 C 0.498 3.502 9 O -0.550 6.550 10 N -0.578 5.578 11 C 0.117 3.883 12 C -0.115 4.115 13 C 0.233 3.767 14 O -0.589 6.589 15 C -0.553 4.553 16 H 0.072 0.928 17 C 0.027 3.973 18 N -0.917 5.917 19 Si 0.966 3.034 20 H -0.264 1.264 21 H -0.283 1.283 22 H -0.280 1.280 23 C 0.102 3.898 24 C 0.083 3.917 25 C 0.508 3.492 26 O -0.582 6.582 27 N -0.598 5.598 28 C 0.064 3.936 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.071 0.929 32 H 0.123 0.877 33 H 0.108 0.892 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.378 0.622 39 H 0.272 0.728 40 H 0.060 0.940 41 H 0.054 0.946 42 H 0.120 0.880 43 H 0.135 0.865 44 H 0.068 0.932 45 H 0.076 0.924 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.043 5.323 5.788 23.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.022 3.978 3 H 0.098 0.902 4 C -0.026 4.026 5 N -0.323 5.323 6 C 0.310 3.690 7 O -0.389 6.389 8 C 0.282 3.718 9 O -0.431 6.431 10 N -0.309 5.309 11 C -0.004 4.004 12 C -0.153 4.153 13 C 0.193 3.807 14 O -0.399 6.399 15 C -0.591 4.591 16 H 0.090 0.910 17 C -0.174 4.174 18 N -0.557 5.557 19 Si 0.791 3.209 20 H -0.188 1.188 21 H -0.209 1.209 22 H -0.206 1.206 23 C -0.020 4.020 24 C -0.042 4.042 25 C 0.296 3.704 26 O -0.463 6.463 27 N -0.331 5.331 28 C -0.077 4.077 29 H 0.099 0.901 30 H 0.113 0.887 31 H 0.090 0.910 32 H 0.142 0.858 33 H 0.126 0.874 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.111 0.889 38 H 0.229 0.771 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.137 0.863 43 H 0.152 0.848 44 H 0.087 0.913 45 H 0.094 0.906 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -22.292 5.361 6.091 23.723 hybrid contribution 1.823 -0.831 0.386 2.041 sum -20.469 4.530 6.477 21.942 Atomic orbital electron populations 1.22128 0.89970 1.04068 1.05006 1.21460 0.97681 0.96197 0.82480 0.90225 1.22433 0.77143 1.03634 0.99404 1.47968 1.07688 1.47919 1.28720 1.19701 0.85966 0.81440 0.81938 1.90726 1.80623 1.31775 1.35806 1.20197 0.87018 0.83114 0.81471 1.90584 1.81972 1.31541 1.39052 1.48693 1.08459 1.35117 1.38636 1.22207 0.97967 0.88729 0.91536 1.22730 0.93373 0.97383 1.01822 1.19888 0.92602 0.85842 0.82410 1.86081 1.69381 1.31185 1.53238 1.21825 0.91297 0.94915 1.51099 0.91012 1.25817 1.03778 0.94819 0.92990 1.69660 1.36226 1.00412 1.49358 0.85381 0.79295 0.78732 0.77460 1.18801 1.20865 1.20628 1.23176 0.76710 1.00608 1.01482 1.22570 1.02932 0.96414 0.82294 1.20436 0.80984 0.78533 0.90433 1.90720 1.69017 1.55999 1.30546 1.47422 1.27379 1.46257 1.11992 1.21958 0.97214 1.02729 0.85844 0.90052 0.88690 0.91001 0.85842 0.87430 0.90786 0.89593 0.89566 0.88903 0.77057 0.91890 0.92147 0.92785 0.86252 0.84834 0.91324 0.90590 0.88910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 8.25 71.98 0.59 -0.22 16 2 C 0.13 1.59 3.54 44.99 0.16 1.75 16 3 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 4 C 0.09 1.44 5.80 86.07 0.50 1.94 16 5 N -0.59 -14.46 2.99 -825.76 -2.47 -16.93 16 6 C 0.53 16.48 7.73 87.27 0.67 17.16 16 7 O -0.51 -16.28 13.67 -3.23 -0.04 -16.33 16 8 C 0.50 19.40 7.77 87.27 0.68 20.08 16 9 O -0.55 -23.52 13.54 -3.25 -0.04 -23.57 16 10 N -0.58 -23.76 3.32 -812.94 -2.70 -26.46 16 11 C 0.12 4.21 5.50 86.73 0.48 4.69 16 12 C -0.12 -4.44 6.12 31.78 0.19 -4.24 16 13 C 0.23 11.13 0.89 -10.07 -0.01 11.12 16 14 O -0.59 -30.30 13.19 -148.98 -1.97 -32.27 16 15 C -0.55 -28.09 8.25 25.60 0.21 -27.88 16 16 H 0.07 3.52 7.76 -2.91 -0.02 3.50 16 17 C 0.03 1.36 5.30 84.66 0.45 1.81 16 18 N -0.92 -48.70 10.72 21.45 0.23 -48.47 16 19 Si 0.97 40.98 29.54 68.60 2.03 43.01 16 20 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 21 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 22 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 23 C 0.10 4.86 5.65 86.94 0.49 5.35 16 24 C 0.08 2.22 5.86 85.45 0.50 2.72 16 25 C 0.51 13.38 7.58 87.79 0.67 14.05 16 26 O -0.58 -19.69 15.97 -3.03 -0.05 -19.74 16 27 N -0.60 -11.02 3.12 -827.93 -2.58 -13.60 16 28 C 0.06 0.91 9.36 127.77 1.20 2.10 16 29 H 0.08 0.30 6.90 -2.39 -0.02 0.29 16 30 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.07 0.36 8.14 -2.38 -0.02 0.34 16 32 H 0.12 1.78 7.09 -2.39 -0.02 1.76 16 33 H 0.11 1.21 8.08 -2.38 -0.02 1.19 16 34 H 0.07 2.66 7.45 -2.39 -0.02 2.65 16 35 H 0.09 2.70 7.83 -2.39 -0.02 2.68 16 36 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 37 H 0.09 3.26 8.01 -2.38 -0.02 3.25 16 38 H 0.38 20.39 6.93 -74.05 -0.51 19.88 16 39 H 0.27 13.80 8.31 -92.71 -0.77 13.03 16 40 H 0.06 2.91 8.03 -2.39 -0.02 2.89 16 41 H 0.05 2.90 7.64 -2.39 -0.02 2.89 16 42 H 0.12 2.87 8.14 -2.39 -0.02 2.85 16 43 H 0.13 4.52 4.91 -7.88 -0.04 4.48 16 44 H 0.07 1.34 6.59 -2.39 -0.02 1.33 16 45 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.09 0.78 6.90 -2.39 -0.02 0.76 16 Total: -1.00 -67.03 366.24 -0.33 -67.37 By element: Atomic # 1 Polarization: 36.06 SS G_CDS: 0.48 Total: 36.54 kcal Atomic # 6 Polarization: 43.65 SS G_CDS: 6.78 Total: 50.43 kcal Atomic # 7 Polarization: -97.94 SS G_CDS: -7.52 Total: -105.46 kcal Atomic # 8 Polarization: -89.79 SS G_CDS: -2.10 Total: -91.89 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.01 kcal Total: -67.03 -0.33 -67.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327023136.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.299 kcal (2) G-P(sol) polarization free energy of solvation -67.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds