Wall clock time and date at job start Sat Apr 11 2020 05:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21283 * 120.00040 * 2 1 4 4 N 1.34776 * 119.99935 * 180.02562 * 2 1 3 5 5 C 1.46501 * 119.99481 * 180.02562 * 4 2 1 6 6 H 1.09000 * 110.88915 * 328.87312 * 5 4 2 7 7 C 1.55158 * 110.99985 * 204.99963 * 5 4 2 8 8 C 1.54319 * 102.94399 * 206.42477 * 7 5 4 9 9 N 1.47025 * 107.27371 * 22.19301 * 8 7 5 10 10 C 1.34771 * 125.65438 * 181.02239 * 9 8 7 11 11 O 1.21350 * 120.00011 * 180.02562 * 10 9 8 12 12 C 1.49451 * 119.99736 * 0.02597 * 10 9 8 13 13 O 1.21349 * 120.00079 * 0.02562 * 12 10 9 14 14 N 1.34783 * 120.00030 * 179.97438 * 12 10 9 15 15 C 1.47025 * 125.64487 * 359.97438 * 14 12 10 16 16 C 1.54325 * 107.39934 * 178.89811 * 15 14 12 17 17 C 1.55405 * 102.82609 * 337.97912 * 16 15 14 18 18 O 1.42907 * 110.89158 * 277.26458 * 17 16 15 19 19 C 1.50705 * 111.06912 * 153.49165 * 17 16 15 20 20 H 1.08002 * 119.99085 * 272.48421 * 19 17 16 21 21 C 1.37871 * 120.00177 * 92.48523 * 19 17 16 22 22 N 1.31515 * 119.99812 * 173.52077 * 21 19 17 23 23 Si 1.86792 * 120.00321 * 353.51696 * 21 19 17 24 24 H 1.48507 * 109.47173 * 87.32378 * 23 21 19 25 25 H 1.48503 * 109.47516 * 207.32211 * 23 21 19 26 26 H 1.48503 * 109.47146 * 327.32600 * 23 21 19 27 27 C 1.47418 * 125.64888 * 180.02562 * 14 12 10 28 28 C 1.47432 * 108.69838 * 1.28844 * 9 8 7 29 29 H 1.08999 * 109.47291 * 270.00024 * 1 2 3 30 30 H 1.09009 * 109.47594 * 30.00027 * 1 2 3 31 31 H 1.08997 * 109.47299 * 149.99819 * 1 2 3 32 32 H 0.96999 * 119.99898 * 359.97438 * 4 2 1 33 33 H 1.09006 * 110.72383 * 88.06292 * 7 5 4 34 34 H 1.08997 * 110.87662 * 324.85971 * 7 5 4 35 35 H 1.09002 * 109.88732 * 262.77638 * 8 7 5 36 36 H 1.09004 * 109.88499 * 141.60782 * 8 7 5 37 37 H 1.08994 * 109.88389 * 298.39406 * 15 14 12 38 38 H 1.09001 * 109.87876 * 59.40743 * 15 14 12 39 39 H 1.08997 * 110.72180 * 96.24579 * 16 15 14 40 40 H 1.08996 * 110.71842 * 219.52603 * 16 15 14 41 41 H 0.96695 * 113.99858 * 168.43858 * 18 17 16 42 42 H 0.97006 * 120.00268 * 179.97438 * 22 21 19 43 43 H 1.09004 * 110.36641 * 322.92911 * 27 14 12 44 44 H 1.08996 * 110.37136 * 85.25133 * 27 14 12 45 45 H 1.08995 * 110.36482 * 94.48144 * 28 9 8 46 46 H 1.08999 * 110.36555 * 216.80923 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6458 -1.1671 0.0000 6 1 4.0346 -0.2950 -0.5256 7 6 4.2022 -2.4794 -0.6128 8 6 5.5832 -2.6177 0.0618 9 7 5.5425 -1.8330 1.3045 10 6 6.5627 -1.6824 2.1723 11 8 6.4153 -1.0090 3.1710 12 6 7.8753 -2.3449 1.9046 13 8 8.0227 -3.0180 0.9056 14 7 8.8957 -2.1939 2.7721 15 6 8.8550 -1.4088 4.0144 16 6 10.2345 -1.5462 4.6926 17 6 10.7925 -2.8592 4.0764 18 8 10.2823 -4.0025 4.7654 19 6 12.2996 -2.8601 4.0768 20 1 12.8399 -2.4266 3.2482 21 6 12.9884 -3.4143 5.1347 22 7 14.2972 -3.5306 5.0785 23 14 12.0628 -3.9999 6.6478 24 1 11.6238 -5.4042 6.4469 25 1 12.9542 -3.9248 7.8333 26 1 10.8747 -3.1363 6.8664 27 6 10.2376 -2.7879 2.6319 28 6 4.1988 -1.2434 1.4474 29 1 -0.3634 0.0000 1.0276 30 1 -0.3634 0.8900 -0.5139 31 1 -0.3634 -0.8899 -0.5138 32 1 1.6958 -2.0072 -0.0005 33 1 4.3087 -2.3857 -1.6936 34 1 3.5639 -3.3265 -0.3617 35 1 6.3587 -2.2277 -0.5975 36 1 5.7807 -3.6649 0.2911 37 1 8.6574 -0.3617 3.7849 38 1 8.0780 -1.7969 4.6729 39 1 10.8741 -0.7003 4.4406 40 1 10.1254 -1.6403 5.7730 41 1 10.4552 -4.8415 4.3169 42 1 14.7820 -3.9201 5.8230 43 1 10.1671 -3.7875 2.2028 44 1 10.8710 -2.1524 2.0130 45 1 3.5675 -1.8831 2.0640 46 1 4.2667 -0.2452 1.8801 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327038277.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:48 Heat of formation + Delta-G solvation = -132.481840 kcal Electronic energy + Delta-G solvation = -30040.048215 eV Core-core repulsion = 25737.393585 eV Total energy + Delta-G solvation = -4302.654629 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.90985 -40.10051 -38.99384 -37.64954 -37.53485 -34.99449 -34.48222 -32.39980 -31.56361 -30.46816 -30.12382 -28.74814 -28.37665 -26.14571 -24.58049 -22.84028 -21.97018 -21.46416 -20.99846 -19.87235 -19.21965 -17.67965 -17.50235 -17.35657 -16.81805 -16.76437 -15.95450 -15.72814 -15.41470 -15.26175 -15.04441 -14.70035 -14.44637 -13.96402 -13.91664 -13.65527 -13.39987 -13.30693 -13.14120 -12.94325 -12.69569 -12.60393 -12.53568 -12.20151 -12.03573 -11.98649 -11.75600 -11.58459 -11.31389 -11.11525 -10.98371 -10.50681 -10.37269 -10.35882 -10.25310 -9.71409 -9.29240 -9.25615 -8.97602 -8.70896 -8.55176 -8.22985 -6.21665 -4.34198 1.57525 2.11176 2.21881 2.75378 3.35159 3.44973 3.49436 3.52210 3.69583 3.96175 4.17085 4.35665 4.42853 4.48562 4.54150 4.71818 4.78753 4.89288 4.92289 4.99946 5.12597 5.25773 5.30060 5.37091 5.41624 5.51279 5.56717 5.67274 5.70125 5.75220 5.82943 5.96838 6.02299 6.13270 6.33675 6.44800 6.63816 6.76117 6.97438 7.00963 7.03711 7.39839 7.54311 7.73535 7.75317 8.09052 8.17733 8.57845 8.77996 9.39466 10.86876 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.031217 B = 0.002283 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.735298 B =12260.359451 C =12582.598574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.511 3.489 3 O -0.540 6.540 4 N -0.721 5.721 5 C 0.130 3.870 6 H 0.110 0.890 7 C -0.141 4.141 8 C 0.111 3.889 9 N -0.597 5.597 10 C 0.525 3.475 11 O -0.511 6.511 12 C 0.516 3.484 13 O -0.533 6.533 14 N -0.575 5.575 15 C 0.107 3.893 16 C -0.125 4.125 17 C 0.219 3.781 18 O -0.558 6.558 19 C -0.552 4.552 20 H 0.082 0.918 21 C 0.075 3.925 22 N -0.886 5.886 23 Si 0.950 3.050 24 H -0.293 1.293 25 H -0.326 1.326 26 H -0.268 1.268 27 C 0.088 3.912 28 C 0.097 3.903 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.404 0.596 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.371 0.629 42 H 0.267 0.733 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.074 0.926 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.507 1.314 -11.170 28.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.298 3.702 3 O -0.417 6.417 4 N -0.374 5.374 5 C 0.024 3.976 6 H 0.128 0.872 7 C -0.179 4.179 8 C -0.011 4.011 9 N -0.333 5.333 10 C 0.308 3.692 11 O -0.386 6.386 12 C 0.298 3.702 13 O -0.412 6.412 14 N -0.307 5.307 15 C -0.016 4.016 16 C -0.163 4.163 17 C 0.179 3.821 18 O -0.366 6.366 19 C -0.590 4.590 20 H 0.100 0.900 21 C -0.130 4.130 22 N -0.521 5.521 23 Si 0.786 3.214 24 H -0.221 1.221 25 H -0.257 1.257 26 H -0.194 1.194 27 C -0.033 4.033 28 C -0.027 4.027 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.099 0.901 32 H 0.239 0.761 33 H 0.111 0.889 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.105 0.895 40 H 0.101 0.899 41 H 0.219 0.781 42 H 0.076 0.924 43 H 0.094 0.906 44 H 0.098 0.902 45 H 0.092 0.908 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -26.077 2.520 -10.664 28.286 hybrid contribution -0.421 -1.212 0.392 1.342 sum -26.499 1.309 -10.271 28.450 Atomic orbital electron populations 1.21888 0.91267 1.05023 1.05011 1.20925 0.90768 0.83403 0.75100 1.90771 1.70746 1.31345 1.48805 1.45961 1.06301 1.09139 1.76018 1.22141 0.80104 0.99923 0.95443 0.87176 1.23036 0.96514 0.96891 1.01463 1.22137 0.96751 0.97299 0.84954 1.48058 1.11428 1.50431 1.23420 1.20018 0.84535 0.81826 0.82774 1.90768 1.82527 1.38909 1.26348 1.19433 0.84244 0.82793 0.83723 1.90707 1.82725 1.40685 1.27093 1.48444 1.12061 1.48033 1.22183 1.22277 0.99596 0.95017 0.84675 1.23114 0.93262 0.99012 1.00941 1.20333 0.93293 0.83227 0.85257 1.86146 1.81325 1.17461 1.51649 1.21068 0.87594 1.42126 1.08176 0.89976 1.25106 0.94926 0.93800 0.99186 1.69965 1.07325 1.42550 1.32233 0.85658 0.77403 0.79157 0.79224 1.22070 1.25720 1.19419 1.23326 0.80047 0.98628 1.01336 1.22685 0.82693 1.00113 0.97221 0.88640 0.88728 0.90072 0.76100 0.88936 0.89825 0.89751 0.89821 0.91382 0.91038 0.89500 0.89922 0.78130 0.92351 0.90606 0.90169 0.90761 0.89485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.59 10.30 36.00 0.37 -0.22 16 2 C 0.51 3.86 7.94 -10.99 -0.09 3.77 16 3 O -0.54 -6.89 16.74 5.56 0.09 -6.80 16 4 N -0.72 -3.94 5.19 -51.62 -0.27 -4.21 16 5 C 0.13 0.99 3.44 -65.66 -0.23 0.77 16 6 H 0.11 1.06 7.54 -51.93 -0.39 0.67 16 7 C -0.14 -0.83 6.59 -24.90 -0.16 -0.99 16 8 C 0.11 1.09 5.49 -3.07 -0.02 1.08 16 9 N -0.60 -7.48 3.32 -170.88 -0.57 -8.05 16 10 C 0.52 8.47 7.88 -11.59 -0.09 8.38 16 11 O -0.51 -9.20 14.37 5.50 0.08 -9.12 16 12 C 0.52 9.13 7.88 -11.58 -0.09 9.04 16 13 O -0.53 -9.72 14.38 5.50 0.08 -9.64 16 14 N -0.58 -10.73 3.33 -171.03 -0.57 -11.30 16 15 C 0.11 1.95 5.48 -3.06 -0.02 1.93 16 16 C -0.13 -2.50 5.92 -24.76 -0.15 -2.65 16 17 C 0.22 4.78 0.70 -89.48 -0.06 4.72 16 18 O -0.56 -12.04 8.51 -35.23 -0.30 -12.34 16 19 C -0.55 -14.32 8.89 -34.44 -0.31 -14.63 16 20 H 0.08 2.30 8.00 -52.49 -0.42 1.88 16 21 C 0.08 2.06 5.46 -17.82 -0.10 1.96 16 22 N -0.89 -25.89 13.96 55.43 0.77 -25.12 16 23 Si 0.95 23.19 24.93 -169.99 -4.24 18.95 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 25 H -0.33 -8.18 7.11 56.52 0.40 -7.78 16 26 H -0.27 -6.45 5.42 56.52 0.31 -6.14 16 27 C 0.09 1.73 6.07 -2.53 -0.02 1.72 16 28 C 0.10 0.99 6.61 -2.41 -0.02 0.97 16 29 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.09 0.36 8.14 -51.92 -0.42 -0.07 16 31 H 0.08 0.07 8.14 -51.93 -0.42 -0.35 16 32 H 0.40 0.90 8.57 -40.82 -0.35 0.55 16 33 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.34 8.01 -51.93 -0.42 -0.08 16 35 H 0.08 0.91 7.58 -51.93 -0.39 0.51 16 36 H 0.08 0.87 7.70 -51.93 -0.40 0.47 16 37 H 0.07 1.18 7.69 -51.93 -0.40 0.78 16 38 H 0.07 1.33 7.57 -51.93 -0.39 0.94 16 39 H 0.09 1.69 8.03 -51.93 -0.42 1.27 16 40 H 0.08 1.70 6.66 -51.93 -0.35 1.35 16 41 H 0.37 7.05 8.98 45.56 0.41 7.46 16 42 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.08 1.47 8.02 -51.93 -0.42 1.05 16 44 H 0.08 1.59 7.98 -51.93 -0.41 1.17 16 45 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.09 1.07 8.03 -51.93 -0.42 0.66 16 LS Contribution 372.42 15.07 5.61 5.61 Total: -1.00 -34.94 372.42 -6.38 -41.33 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -6.11 Total: 4.85 kcal Atomic # 6 Polarization: 16.82 SS G_CDS: -0.97 Total: 15.85 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: -0.63 Total: -48.68 kcal Atomic # 8 Polarization: -37.86 SS G_CDS: -0.05 Total: -37.91 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -4.24 Total: 18.95 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.94 -6.38 -41.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327038277.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.156 kcal (2) G-P(sol) polarization free energy of solvation -34.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds