Wall clock time and date at job start Sat Apr 11 2020 05:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21283 * 120.00040 * 2 1 4 4 N 1.34776 * 119.99935 * 180.02562 * 2 1 3 5 5 C 1.46501 * 119.99481 * 180.02562 * 4 2 1 6 6 H 1.09000 * 110.88915 * 328.87312 * 5 4 2 7 7 C 1.55158 * 110.99985 * 204.99963 * 5 4 2 8 8 C 1.54319 * 102.94399 * 206.42477 * 7 5 4 9 9 N 1.47025 * 107.27371 * 22.19301 * 8 7 5 10 10 C 1.34771 * 125.65438 * 181.02239 * 9 8 7 11 11 O 1.21350 * 120.00011 * 180.02562 * 10 9 8 12 12 C 1.49451 * 119.99736 * 0.02597 * 10 9 8 13 13 O 1.21349 * 120.00079 * 0.02562 * 12 10 9 14 14 N 1.34783 * 120.00030 * 179.97438 * 12 10 9 15 15 C 1.47025 * 125.64487 * 359.97438 * 14 12 10 16 16 C 1.54325 * 107.39934 * 178.89811 * 15 14 12 17 17 C 1.55405 * 102.82609 * 337.97912 * 16 15 14 18 18 O 1.42907 * 110.89158 * 277.26458 * 17 16 15 19 19 C 1.50705 * 111.06912 * 153.49165 * 17 16 15 20 20 H 1.08002 * 119.99085 * 272.48421 * 19 17 16 21 21 C 1.37871 * 120.00177 * 92.48523 * 19 17 16 22 22 N 1.31515 * 119.99812 * 173.52077 * 21 19 17 23 23 Si 1.86792 * 120.00321 * 353.51696 * 21 19 17 24 24 H 1.48507 * 109.47173 * 87.32378 * 23 21 19 25 25 H 1.48503 * 109.47516 * 207.32211 * 23 21 19 26 26 H 1.48503 * 109.47146 * 327.32600 * 23 21 19 27 27 C 1.47418 * 125.64888 * 180.02562 * 14 12 10 28 28 C 1.47432 * 108.69838 * 1.28844 * 9 8 7 29 29 H 1.08999 * 109.47291 * 270.00024 * 1 2 3 30 30 H 1.09009 * 109.47594 * 30.00027 * 1 2 3 31 31 H 1.08997 * 109.47299 * 149.99819 * 1 2 3 32 32 H 0.96999 * 119.99898 * 359.97438 * 4 2 1 33 33 H 1.09006 * 110.72383 * 88.06292 * 7 5 4 34 34 H 1.08997 * 110.87662 * 324.85971 * 7 5 4 35 35 H 1.09002 * 109.88732 * 262.77638 * 8 7 5 36 36 H 1.09004 * 109.88499 * 141.60782 * 8 7 5 37 37 H 1.08994 * 109.88389 * 298.39406 * 15 14 12 38 38 H 1.09001 * 109.87876 * 59.40743 * 15 14 12 39 39 H 1.08997 * 110.72180 * 96.24579 * 16 15 14 40 40 H 1.08996 * 110.71842 * 219.52603 * 16 15 14 41 41 H 0.96695 * 113.99858 * 168.43858 * 18 17 16 42 42 H 0.97006 * 120.00268 * 179.97438 * 22 21 19 43 43 H 1.09004 * 110.36641 * 322.92911 * 27 14 12 44 44 H 1.08996 * 110.37136 * 85.25133 * 27 14 12 45 45 H 1.08995 * 110.36482 * 94.48144 * 28 9 8 46 46 H 1.08999 * 110.36555 * 216.80923 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6458 -1.1671 0.0000 6 1 4.0346 -0.2950 -0.5256 7 6 4.2022 -2.4794 -0.6128 8 6 5.5832 -2.6177 0.0618 9 7 5.5425 -1.8330 1.3045 10 6 6.5627 -1.6824 2.1723 11 8 6.4153 -1.0090 3.1710 12 6 7.8753 -2.3449 1.9046 13 8 8.0227 -3.0180 0.9056 14 7 8.8957 -2.1939 2.7721 15 6 8.8550 -1.4088 4.0144 16 6 10.2345 -1.5462 4.6926 17 6 10.7925 -2.8592 4.0764 18 8 10.2823 -4.0025 4.7654 19 6 12.2996 -2.8601 4.0768 20 1 12.8399 -2.4266 3.2482 21 6 12.9884 -3.4143 5.1347 22 7 14.2972 -3.5306 5.0785 23 14 12.0628 -3.9999 6.6478 24 1 11.6238 -5.4042 6.4469 25 1 12.9542 -3.9248 7.8333 26 1 10.8747 -3.1363 6.8664 27 6 10.2376 -2.7879 2.6319 28 6 4.1988 -1.2434 1.4474 29 1 -0.3634 0.0000 1.0276 30 1 -0.3634 0.8900 -0.5139 31 1 -0.3634 -0.8899 -0.5138 32 1 1.6958 -2.0072 -0.0005 33 1 4.3087 -2.3857 -1.6936 34 1 3.5639 -3.3265 -0.3617 35 1 6.3587 -2.2277 -0.5975 36 1 5.7807 -3.6649 0.2911 37 1 8.6574 -0.3617 3.7849 38 1 8.0780 -1.7969 4.6729 39 1 10.8741 -0.7003 4.4406 40 1 10.1254 -1.6403 5.7730 41 1 10.4552 -4.8415 4.3169 42 1 14.7820 -3.9201 5.8230 43 1 10.1671 -3.7875 2.2028 44 1 10.8710 -2.1524 2.0130 45 1 3.5675 -1.8831 2.0640 46 1 4.2667 -0.2452 1.8801 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327038277.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:47 Heat of formation + Delta-G solvation = -162.139484 kcal Electronic energy + Delta-G solvation = -30041.334267 eV Core-core repulsion = 25737.393585 eV Total energy + Delta-G solvation = -4303.940681 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.07632 -40.98895 -40.21117 -39.06686 -38.65878 -36.48997 -35.36247 -34.46876 -32.29918 -32.09963 -30.68692 -30.14509 -29.35911 -27.76675 -25.88729 -24.21088 -22.99171 -22.33680 -21.68059 -21.56281 -20.46108 -19.47928 -18.60880 -18.25084 -18.03282 -17.65977 -17.23025 -17.04411 -16.70504 -16.60733 -16.32843 -15.98613 -15.64605 -15.25591 -14.78096 -14.71238 -14.57115 -14.52689 -14.34869 -14.03192 -13.91036 -13.86400 -13.40553 -13.35806 -13.30566 -13.05689 -12.95938 -12.76060 -12.68433 -12.45027 -12.31436 -12.20193 -12.01379 -11.90293 -11.25612 -11.02092 -10.72090 -10.64300 -10.45453 -10.28205 -10.01056 -9.71250 -8.34524 -6.48083 0.24799 1.01132 1.49813 1.54140 1.60581 1.74778 1.99951 2.06724 2.39675 2.45563 2.93976 3.02543 3.40130 3.45608 3.48558 3.77204 3.92600 3.95723 3.99784 4.13735 4.20854 4.21098 4.34435 4.48662 4.54701 4.60810 4.68465 4.71251 4.74317 4.75973 4.85114 4.89929 5.01021 5.03378 5.06769 5.15691 5.17356 5.29341 5.41866 5.49211 5.92436 6.04737 6.14900 6.41649 6.54798 6.58042 6.81333 6.90772 7.25013 7.29780 8.77860 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.031217 B = 0.002283 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.735298 B =12260.359451 C =12582.598574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.505 3.495 3 O -0.601 6.601 4 N -0.703 5.703 5 C 0.137 3.863 6 H 0.088 0.912 7 C -0.119 4.119 8 C 0.103 3.897 9 N -0.589 5.589 10 C 0.522 3.478 11 O -0.537 6.537 12 C 0.515 3.485 13 O -0.539 6.539 14 N -0.582 5.582 15 C 0.120 3.880 16 C -0.123 4.123 17 C 0.217 3.783 18 O -0.560 6.560 19 C -0.545 4.545 20 H 0.050 0.950 21 C 0.028 3.972 22 N -0.933 5.933 23 Si 1.006 2.994 24 H -0.283 1.283 25 H -0.337 1.337 26 H -0.261 1.261 27 C 0.098 3.902 28 C 0.095 3.905 29 H 0.108 0.892 30 H 0.089 0.911 31 H 0.114 0.886 32 H 0.424 0.576 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.382 0.618 42 H 0.268 0.732 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.092 0.908 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.208 0.049 -11.954 32.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.294 3.706 3 O -0.482 6.482 4 N -0.357 5.357 5 C 0.030 3.970 6 H 0.106 0.894 7 C -0.157 4.157 8 C -0.019 4.019 9 N -0.324 5.324 10 C 0.304 3.696 11 O -0.414 6.414 12 C 0.299 3.701 13 O -0.418 6.418 14 N -0.314 5.314 15 C -0.002 4.002 16 C -0.161 4.161 17 C 0.177 3.823 18 O -0.369 6.369 19 C -0.583 4.583 20 H 0.069 0.931 21 C -0.172 4.172 22 N -0.570 5.570 23 Si 0.840 3.160 24 H -0.210 1.210 25 H -0.270 1.270 26 H -0.186 1.186 27 C -0.024 4.024 28 C -0.028 4.028 29 H 0.126 0.874 30 H 0.108 0.892 31 H 0.133 0.867 32 H 0.264 0.736 33 H 0.131 0.869 34 H 0.133 0.867 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.107 0.893 40 H 0.098 0.902 41 H 0.231 0.769 42 H 0.076 0.924 43 H 0.098 0.902 44 H 0.093 0.907 45 H 0.111 0.889 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -29.853 1.194 -11.505 32.016 hybrid contribution 0.699 -0.818 0.504 1.188 sum -29.154 0.376 -11.001 31.163 Atomic orbital electron populations 1.21906 0.87739 1.06476 1.06209 1.21740 0.92452 0.82784 0.73602 1.90753 1.72193 1.33567 1.51674 1.45813 1.05283 1.09790 1.74772 1.21896 0.81421 1.00244 0.93448 0.89410 1.23000 0.94081 0.96632 1.02034 1.22356 0.99184 0.96579 0.83768 1.48154 1.11353 1.49589 1.23267 1.19694 0.84644 0.81944 0.83273 1.90752 1.82861 1.40233 1.27579 1.19776 0.84635 0.82478 0.83258 1.90698 1.83013 1.40868 1.27215 1.48420 1.11881 1.48434 1.22682 1.22138 0.98157 0.95604 0.84336 1.23040 0.94326 0.97903 1.00842 1.20186 0.90951 0.84163 0.87036 1.86099 1.80872 1.17989 1.51954 1.21268 0.89952 1.40465 1.06595 0.93132 1.25807 0.95337 0.94358 1.01724 1.70073 1.08905 1.44809 1.33216 0.84742 0.76133 0.79239 0.75887 1.21045 1.26965 1.18614 1.23015 0.80775 0.98907 0.99669 1.22850 0.81773 0.98912 0.99288 0.87389 0.89222 0.86707 0.73641 0.86894 0.86703 0.90875 0.89915 0.90344 0.91039 0.89331 0.90165 0.76853 0.92370 0.90237 0.90709 0.88944 0.92095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.64 10.30 71.23 0.73 0.09 16 2 C 0.50 6.73 7.94 87.66 0.70 7.43 16 3 O -0.60 -15.38 16.74 -3.04 -0.05 -15.43 16 4 N -0.70 -5.61 5.19 -435.60 -2.26 -7.87 16 5 C 0.14 1.81 3.44 46.46 0.16 1.97 16 6 H 0.09 1.63 7.54 -2.39 -0.02 1.61 16 7 C -0.12 -0.97 6.59 31.78 0.21 -0.76 16 8 C 0.10 1.81 5.49 86.73 0.48 2.28 16 9 N -0.59 -14.01 3.32 -812.91 -2.70 -16.71 16 10 C 0.52 16.41 7.88 87.27 0.69 17.10 16 11 O -0.54 -19.05 14.37 -3.25 -0.05 -19.10 16 12 C 0.52 17.76 7.88 87.27 0.69 18.45 16 13 O -0.54 -19.05 14.38 -3.24 -0.05 -19.10 16 14 N -0.58 -21.17 3.33 -813.37 -2.71 -23.87 16 15 C 0.12 4.24 5.48 86.73 0.48 4.72 16 16 C -0.12 -4.81 5.92 31.87 0.19 -4.63 16 17 C 0.22 9.34 0.70 -10.06 -0.01 9.33 16 18 O -0.56 -23.23 8.51 -148.98 -1.27 -24.50 16 19 C -0.55 -28.61 8.89 25.60 0.23 -28.38 16 20 H 0.05 2.93 8.00 -2.91 -0.02 2.90 16 21 C 0.03 1.55 5.46 84.65 0.46 2.02 16 22 N -0.93 -55.73 13.96 21.45 0.30 -55.43 16 23 Si 1.01 47.61 24.93 68.60 1.71 49.32 16 24 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 25 H -0.34 -16.51 7.11 99.48 0.71 -15.80 16 26 H -0.26 -11.90 5.42 99.48 0.54 -11.36 16 27 C 0.10 3.82 6.07 86.86 0.53 4.34 16 28 C 0.09 1.81 6.61 86.93 0.57 2.39 16 29 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 30 H 0.09 0.50 8.14 -2.38 -0.02 0.48 16 31 H 0.11 -0.32 8.14 -2.39 -0.02 -0.34 16 32 H 0.42 -0.04 8.57 -92.71 -0.79 -0.83 16 33 H 0.11 0.58 8.14 -2.38 -0.02 0.56 16 34 H 0.11 0.30 8.01 -2.39 -0.02 0.28 16 35 H 0.07 1.47 7.58 -2.39 -0.02 1.45 16 36 H 0.08 1.52 7.70 -2.38 -0.02 1.50 16 37 H 0.08 2.63 7.69 -2.39 -0.02 2.61 16 38 H 0.07 2.56 7.57 -2.39 -0.02 2.54 16 39 H 0.09 3.40 8.03 -2.39 -0.02 3.39 16 40 H 0.08 3.19 6.66 -2.39 -0.02 3.17 16 41 H 0.38 13.85 8.98 -74.06 -0.67 13.19 16 42 H 0.27 15.16 8.31 -92.70 -0.77 14.39 16 43 H 0.08 3.01 8.02 -2.38 -0.02 2.99 16 44 H 0.07 2.97 7.98 -2.39 -0.02 2.95 16 45 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.06 1.51 8.03 -2.39 -0.02 1.49 16 Total: -1.00 -78.10 372.42 -1.58 -79.67 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -0.60 Total: 16.67 kcal Atomic # 6 Polarization: 30.25 SS G_CDS: 6.10 Total: 36.35 kcal Atomic # 7 Polarization: -96.51 SS G_CDS: -7.37 Total: -103.88 kcal Atomic # 8 Polarization: -76.72 SS G_CDS: -1.41 Total: -78.13 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 1.71 Total: 49.32 kcal Total: -78.10 -1.58 -79.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327038277.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.469 kcal (2) G-P(sol) polarization free energy of solvation -78.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds