Wall clock time and date at job start Sat Apr 11 2020 05:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21283 * 120.00472 * 2 1 4 4 N 1.34777 * 119.99538 * 179.97438 * 2 1 3 5 5 C 1.46499 * 119.99665 * 179.72653 * 4 2 1 6 6 H 1.08997 * 110.64239 * 36.96345 * 5 4 2 7 7 C 1.55162 * 110.72136 * 160.30228 * 5 4 2 8 8 C 1.54914 * 101.58093 * 153.86324 * 7 5 4 9 9 N 1.47425 * 104.83224 * 322.98989 * 8 7 5 10 10 C 1.34778 * 125.64472 * 204.15866 * 9 8 7 11 11 O 1.21347 * 119.99890 * 179.97438 * 10 9 8 12 12 C 1.49446 * 120.00155 * 359.96594 * 10 9 8 13 13 O 1.21359 * 120.00159 * 359.97438 * 12 10 9 14 14 N 1.34777 * 120.00259 * 179.97438 * 12 10 9 15 15 C 1.47425 * 125.64537 * 0.02562 * 14 12 10 16 16 C 1.54909 * 104.83341 * 204.09218 * 15 14 12 17 17 C 1.55164 * 101.57862 * 322.98988 * 16 15 14 18 18 O 1.42895 * 110.72370 * 277.13752 * 17 16 15 19 19 C 1.50708 * 110.71674 * 154.04178 * 17 16 15 20 20 H 1.07993 * 119.99594 * 0.02562 * 19 17 16 21 21 C 1.37878 * 119.99746 * 179.97438 * 19 17 16 22 22 N 1.31519 * 119.99982 * 0.02562 * 21 19 17 23 23 Si 1.86795 * 119.99849 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47154 * 0.02562 * 23 21 19 25 25 H 1.48494 * 109.47084 * 120.00464 * 23 21 19 26 26 H 1.48508 * 109.47170 * 240.00483 * 23 21 19 27 27 C 1.47025 * 125.65058 * 179.71818 * 14 12 10 28 28 C 1.47018 * 108.70281 * 24.13393 * 9 8 7 29 29 H 1.08998 * 109.47276 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47399 * 300.00720 * 1 2 3 31 31 H 1.09005 * 109.46616 * 60.00278 * 1 2 3 32 32 H 0.97001 * 120.00485 * 0.02562 * 4 2 1 33 33 H 1.08990 * 111.00256 * 271.94268 * 7 5 4 34 34 H 1.08997 * 111.00060 * 35.79533 * 7 5 4 35 35 H 1.09000 * 110.36394 * 204.14726 * 8 7 5 36 36 H 1.08994 * 110.36325 * 81.83101 * 8 7 5 37 37 H 1.08995 * 110.36982 * 322.93171 * 15 14 12 38 38 H 1.09008 * 110.36422 * 85.25244 * 15 14 12 39 39 H 1.08993 * 111.00790 * 81.06473 * 16 15 14 40 40 H 1.08999 * 111.00283 * 204.92332 * 16 15 14 41 41 H 0.96698 * 114.00107 * 180.02562 * 18 17 16 42 42 H 0.96997 * 119.99712 * 179.97438 * 22 21 19 43 43 H 1.09001 * 109.87893 * 298.39325 * 27 14 12 44 44 H 1.08999 * 109.88043 * 59.55994 * 27 14 12 45 45 H 1.09007 * 109.87577 * 239.51773 * 28 9 8 46 46 H 1.08995 * 110.01627 * 118.42884 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.6458 -1.1673 -0.0055 6 1 4.0325 -0.3506 0.6039 7 6 4.1967 -2.5323 0.4852 8 6 5.5782 -2.5796 -0.2142 9 7 5.3539 -1.9637 -1.5348 10 6 6.0964 -2.1800 -2.6386 11 8 5.8185 -1.6166 -3.6767 12 6 7.2621 -3.1136 -2.5840 13 8 7.5405 -3.6766 -1.5455 14 7 8.0043 -3.3303 -3.6879 15 6 7.7796 -2.7150 -5.0086 16 6 8.4294 -3.6941 -6.0180 17 6 9.6797 -4.1684 -5.2309 18 8 10.7470 -3.2275 -5.3625 19 6 10.1154 -5.5344 -5.6951 20 1 9.5683 -6.0385 -6.4779 21 6 11.2131 -6.1399 -5.1212 22 7 11.8796 -5.5256 -4.1682 23 14 11.7536 -7.8326 -5.6970 24 1 10.8440 -8.3035 -6.7723 25 1 13.1412 -7.7577 -6.2206 26 1 11.7056 -8.7823 -4.5563 27 6 9.1759 -4.2145 -3.7728 28 6 4.1859 -1.0751 -1.4482 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.6958 -2.0073 0.0005 33 1 4.3072 -2.5419 1.5695 34 1 3.5616 -3.3527 0.1514 35 1 5.9104 -3.6115 -0.3283 36 1 6.3104 -2.0050 0.3530 37 1 6.7119 -2.6199 -5.2062 38 1 8.2641 -1.7399 -5.0603 39 1 7.7643 -4.5298 -6.2352 40 1 8.7171 -3.1774 -6.9336 41 1 11.5524 -3.4774 -4.8892 42 1 12.6517 -5.9517 -3.7642 43 1 9.9558 -3.8621 -3.0978 44 1 8.8906 -5.2339 -3.5131 45 1 3.4199 -1.4003 -2.1524 46 1 4.4805 -0.0492 -1.6689 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327038280.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:57 Heat of formation + Delta-G solvation = -136.189623 kcal Electronic energy + Delta-G solvation = -30050.534259 eV Core-core repulsion = 25747.718849 eV Total energy + Delta-G solvation = -4302.815411 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.79632 -39.98513 -38.74440 -37.48839 -37.24378 -34.72392 -34.18491 -32.20300 -31.47012 -30.17813 -30.03056 -28.59168 -27.91593 -25.97516 -24.51508 -22.91468 -21.95100 -21.34232 -20.75153 -19.62323 -19.04208 -17.44129 -17.27000 -17.21698 -16.79612 -16.52237 -15.77331 -15.70597 -15.39127 -15.21924 -14.89876 -14.36339 -14.12264 -13.92762 -13.66867 -13.29171 -13.13521 -13.01623 -12.99704 -12.92993 -12.71588 -12.48964 -12.30587 -12.17879 -11.96353 -11.76419 -11.55109 -11.29683 -11.12164 -10.92443 -10.72772 -10.57089 -10.49938 -10.29614 -10.17008 -9.63730 -9.36546 -9.06758 -8.85564 -8.69416 -8.35986 -8.03744 -6.33895 -4.42352 1.74283 2.19530 2.36321 2.83920 3.17256 3.26260 3.29969 3.53488 3.69372 4.04710 4.22497 4.26572 4.44235 4.58002 4.68523 4.74237 4.87277 4.94297 4.97580 5.03353 5.34013 5.37760 5.48894 5.51578 5.56790 5.70085 5.75657 5.82571 5.88089 5.98796 6.03469 6.09985 6.29340 6.49060 6.74560 6.77688 6.81607 7.04117 7.14957 7.18272 7.29821 7.69220 7.74428 7.79889 7.96750 7.99800 8.40148 8.61849 9.26986 9.40797 10.73947 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.027045 B = 0.002292 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.044598 B =12215.730617 C =12641.138531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.511 3.489 3 O -0.542 6.542 4 N -0.722 5.722 5 C 0.132 3.868 6 H 0.107 0.893 7 C -0.141 4.141 8 C 0.100 3.900 9 N -0.596 5.596 10 C 0.525 3.475 11 O -0.515 6.515 12 C 0.511 3.489 13 O -0.535 6.535 14 N -0.574 5.574 15 C 0.098 3.902 16 C -0.121 4.121 17 C 0.248 3.752 18 O -0.585 6.585 19 C -0.535 4.535 20 H 0.069 0.931 21 C 0.069 3.931 22 N -0.897 5.897 23 Si 0.905 3.095 24 H -0.271 1.271 25 H -0.281 1.281 26 H -0.282 1.282 27 C 0.099 3.901 28 C 0.098 3.902 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.404 0.596 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.110 0.890 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.386 0.614 42 H 0.271 0.729 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.727 5.334 9.973 22.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.298 3.702 3 O -0.419 6.419 4 N -0.375 5.375 5 C 0.026 3.974 6 H 0.125 0.875 7 C -0.179 4.179 8 C -0.023 4.023 9 N -0.332 5.332 10 C 0.309 3.691 11 O -0.391 6.391 12 C 0.293 3.707 13 O -0.414 6.414 14 N -0.305 5.305 15 C -0.024 4.024 16 C -0.159 4.159 17 C 0.207 3.793 18 O -0.395 6.395 19 C -0.573 4.573 20 H 0.087 0.913 21 C -0.134 4.134 22 N -0.536 5.536 23 Si 0.733 3.267 24 H -0.195 1.195 25 H -0.207 1.207 26 H -0.208 1.208 27 C -0.022 4.022 28 C -0.026 4.026 29 H 0.095 0.905 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.239 0.761 33 H 0.112 0.888 34 H 0.102 0.898 35 H 0.128 0.872 36 H 0.095 0.905 37 H 0.104 0.896 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.238 0.762 42 H 0.081 0.919 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.092 0.908 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -19.555 6.399 9.686 22.741 hybrid contribution 0.545 -1.593 0.201 1.696 sum -19.010 4.806 9.886 21.959 Atomic orbital electron populations 1.21853 0.91372 1.04324 1.05490 1.20915 0.90748 0.83440 0.75111 1.90761 1.70701 1.31348 1.49090 1.46111 1.06440 1.09106 1.75807 1.21986 0.80140 0.99570 0.95660 0.87464 1.23170 0.97006 0.96041 1.01696 1.22635 0.95895 1.01794 0.81944 1.48138 1.29551 1.44971 1.10588 1.20152 0.83565 0.82856 0.82546 1.90714 1.70048 1.49252 1.29036 1.19413 0.83762 0.83624 0.83929 1.90666 1.70428 1.50961 1.29352 1.48676 1.28939 1.43424 1.09499 1.22651 1.01485 0.96819 0.81442 1.22828 0.97144 0.98137 0.97760 1.19518 0.84304 0.88037 0.87442 1.86097 1.26342 1.49920 1.77107 1.21571 1.13203 1.01377 1.21173 0.91293 1.25097 0.95817 0.98488 0.93975 1.69582 1.19875 1.38864 1.25280 0.86315 0.78603 0.83075 0.78732 1.19548 1.20706 1.20754 1.23274 0.84449 0.92345 1.02117 1.22372 0.88006 0.95098 0.97152 0.90492 0.88632 0.88564 0.76082 0.88752 0.89821 0.87199 0.90482 0.89567 0.91310 0.90521 0.90250 0.76205 0.91907 0.91159 0.90974 0.90811 0.90387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.70 10.39 36.00 0.37 -0.32 16 2 C 0.51 4.18 7.93 -10.99 -0.09 4.09 16 3 O -0.54 -7.10 16.83 5.55 0.09 -7.01 16 4 N -0.72 -4.61 5.13 -52.03 -0.27 -4.88 16 5 C 0.13 1.11 3.23 -66.09 -0.21 0.89 16 6 H 0.11 1.01 7.70 -51.93 -0.40 0.61 16 7 C -0.14 -0.98 6.69 -24.58 -0.16 -1.15 16 8 C 0.10 1.11 6.06 -2.53 -0.02 1.09 16 9 N -0.60 -8.19 3.33 -171.03 -0.57 -8.76 16 10 C 0.52 9.14 7.88 -11.59 -0.09 9.05 16 11 O -0.52 -9.74 14.11 5.50 0.08 -9.67 16 12 C 0.51 10.11 7.88 -11.59 -0.09 10.02 16 13 O -0.53 -11.04 14.11 5.49 0.08 -10.96 16 14 N -0.57 -12.12 3.33 -171.02 -0.57 -12.69 16 15 C 0.10 1.93 6.05 -2.53 -0.02 1.91 16 16 C -0.12 -2.49 6.23 -24.58 -0.15 -2.64 16 17 C 0.25 5.98 0.86 -89.92 -0.08 5.91 16 18 O -0.58 -14.82 13.07 -35.23 -0.46 -15.28 16 19 C -0.54 -13.77 8.12 -34.44 -0.28 -14.05 16 20 H 0.07 1.75 7.76 -52.49 -0.41 1.34 16 21 C 0.07 1.77 5.28 -17.82 -0.09 1.67 16 22 N -0.90 -23.37 10.97 55.43 0.61 -22.76 16 23 Si 0.91 20.09 29.54 -169.99 -5.02 15.07 16 24 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 C 0.10 2.35 5.54 -3.06 -0.02 2.33 16 28 C 0.10 1.12 6.62 -3.06 -0.02 1.10 16 29 H 0.08 0.12 7.91 -51.93 -0.41 -0.29 16 30 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.40 1.38 8.36 -40.82 -0.34 1.04 16 33 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.49 8.00 -51.93 -0.42 0.08 16 35 H 0.11 1.41 6.16 -51.93 -0.32 1.09 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.09 1.60 6.16 -51.93 -0.32 1.28 16 38 H 0.07 1.37 8.14 -51.92 -0.42 0.94 16 39 H 0.08 1.50 8.03 -51.93 -0.42 1.08 16 40 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 41 H 0.39 10.00 6.98 45.56 0.32 10.32 16 42 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 43 H 0.07 1.80 8.07 -51.93 -0.42 1.38 16 44 H 0.07 1.81 7.82 -51.93 -0.41 1.40 16 45 H 0.07 0.85 8.03 -51.93 -0.42 0.43 16 46 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 376.77 15.07 5.68 5.68 Total: -1.00 -32.03 376.77 -7.35 -39.38 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -6.05 Total: 11.97 kcal Atomic # 6 Polarization: 20.86 SS G_CDS: -0.95 Total: 19.92 kcal Atomic # 7 Polarization: -48.29 SS G_CDS: -0.80 Total: -49.09 kcal Atomic # 8 Polarization: -42.71 SS G_CDS: -0.21 Total: -42.92 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.03 -7.35 -39.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327038280.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.812 kcal (2) G-P(sol) polarization free energy of solvation -32.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds