Wall clock time and date at job start Sat Apr 11 2020 05:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21283 * 120.00472 * 2 1 4 4 N 1.34777 * 119.99538 * 179.97438 * 2 1 3 5 5 C 1.46499 * 119.99665 * 179.72653 * 4 2 1 6 6 H 1.08997 * 110.64239 * 36.96345 * 5 4 2 7 7 C 1.55162 * 110.72136 * 160.30228 * 5 4 2 8 8 C 1.54914 * 101.58093 * 153.86324 * 7 5 4 9 9 N 1.47425 * 104.83224 * 322.98989 * 8 7 5 10 10 C 1.34778 * 125.64472 * 204.15866 * 9 8 7 11 11 O 1.21347 * 119.99890 * 179.97438 * 10 9 8 12 12 C 1.49446 * 120.00155 * 359.96594 * 10 9 8 13 13 O 1.21359 * 120.00159 * 359.97438 * 12 10 9 14 14 N 1.34777 * 120.00259 * 179.97438 * 12 10 9 15 15 C 1.47425 * 125.64537 * 0.02562 * 14 12 10 16 16 C 1.54909 * 104.83341 * 204.09218 * 15 14 12 17 17 C 1.55164 * 101.57862 * 322.98988 * 16 15 14 18 18 O 1.42895 * 110.72370 * 277.13752 * 17 16 15 19 19 C 1.50708 * 110.71674 * 154.04178 * 17 16 15 20 20 H 1.07993 * 119.99594 * 0.02562 * 19 17 16 21 21 C 1.37878 * 119.99746 * 179.97438 * 19 17 16 22 22 N 1.31519 * 119.99982 * 0.02562 * 21 19 17 23 23 Si 1.86795 * 119.99849 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47154 * 0.02562 * 23 21 19 25 25 H 1.48494 * 109.47084 * 120.00464 * 23 21 19 26 26 H 1.48508 * 109.47170 * 240.00483 * 23 21 19 27 27 C 1.47025 * 125.65058 * 179.71818 * 14 12 10 28 28 C 1.47018 * 108.70281 * 24.13393 * 9 8 7 29 29 H 1.08998 * 109.47276 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47399 * 300.00720 * 1 2 3 31 31 H 1.09005 * 109.46616 * 60.00278 * 1 2 3 32 32 H 0.97001 * 120.00485 * 0.02562 * 4 2 1 33 33 H 1.08990 * 111.00256 * 271.94268 * 7 5 4 34 34 H 1.08997 * 111.00060 * 35.79533 * 7 5 4 35 35 H 1.09000 * 110.36394 * 204.14726 * 8 7 5 36 36 H 1.08994 * 110.36325 * 81.83101 * 8 7 5 37 37 H 1.08995 * 110.36982 * 322.93171 * 15 14 12 38 38 H 1.09008 * 110.36422 * 85.25244 * 15 14 12 39 39 H 1.08993 * 111.00790 * 81.06473 * 16 15 14 40 40 H 1.08999 * 111.00283 * 204.92332 * 16 15 14 41 41 H 0.96698 * 114.00107 * 180.02562 * 18 17 16 42 42 H 0.96997 * 119.99712 * 179.97438 * 22 21 19 43 43 H 1.09001 * 109.87893 * 298.39325 * 27 14 12 44 44 H 1.08999 * 109.88043 * 59.55994 * 27 14 12 45 45 H 1.09007 * 109.87577 * 239.51773 * 28 9 8 46 46 H 1.08995 * 110.01627 * 118.42884 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.6458 -1.1673 -0.0055 6 1 4.0325 -0.3506 0.6039 7 6 4.1967 -2.5323 0.4852 8 6 5.5782 -2.5796 -0.2142 9 7 5.3539 -1.9637 -1.5348 10 6 6.0964 -2.1800 -2.6386 11 8 5.8185 -1.6166 -3.6767 12 6 7.2621 -3.1136 -2.5840 13 8 7.5405 -3.6766 -1.5455 14 7 8.0043 -3.3303 -3.6879 15 6 7.7796 -2.7150 -5.0086 16 6 8.4294 -3.6941 -6.0180 17 6 9.6797 -4.1684 -5.2309 18 8 10.7470 -3.2275 -5.3625 19 6 10.1154 -5.5344 -5.6951 20 1 9.5683 -6.0385 -6.4779 21 6 11.2131 -6.1399 -5.1212 22 7 11.8796 -5.5256 -4.1682 23 14 11.7536 -7.8326 -5.6970 24 1 10.8440 -8.3035 -6.7723 25 1 13.1412 -7.7577 -6.2206 26 1 11.7056 -8.7823 -4.5563 27 6 9.1759 -4.2145 -3.7728 28 6 4.1859 -1.0751 -1.4482 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.6958 -2.0073 0.0005 33 1 4.3072 -2.5419 1.5695 34 1 3.5616 -3.3527 0.1514 35 1 5.9104 -3.6115 -0.3283 36 1 6.3104 -2.0050 0.3530 37 1 6.7119 -2.6199 -5.2062 38 1 8.2641 -1.7399 -5.0603 39 1 7.7643 -4.5298 -6.2352 40 1 8.7171 -3.1774 -6.9336 41 1 11.5524 -3.4774 -4.8892 42 1 12.6517 -5.9517 -3.7642 43 1 9.9558 -3.8621 -3.0978 44 1 8.8906 -5.2339 -3.5131 45 1 3.4199 -1.4003 -2.1524 46 1 4.4805 -0.0492 -1.6689 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327038280.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:57 Heat of formation + Delta-G solvation = -162.046532 kcal Electronic energy + Delta-G solvation = -30051.655499 eV Core-core repulsion = 25747.718849 eV Total energy + Delta-G solvation = -4303.936651 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.06503 -40.95932 -40.08984 -38.94056 -38.64011 -36.23829 -35.32757 -34.19095 -32.28586 -31.92166 -30.68686 -29.84053 -29.31652 -27.65915 -25.92444 -24.34236 -23.08675 -22.26220 -21.58930 -21.40270 -20.40599 -19.19027 -18.54137 -18.27806 -17.93696 -17.69324 -17.21651 -17.00266 -16.67225 -16.52746 -16.20904 -15.96141 -15.33755 -14.90664 -14.81787 -14.80311 -14.61980 -14.40789 -14.37641 -13.98172 -13.64606 -13.53718 -13.44430 -13.42350 -13.07264 -12.96583 -12.88976 -12.71840 -12.61401 -12.44169 -12.33619 -12.25437 -12.08412 -11.84443 -11.22188 -11.00400 -10.73985 -10.57143 -10.35081 -10.21553 -10.05353 -9.72707 -8.28698 -6.44534 0.25494 1.03618 1.41425 1.44916 1.55661 1.61314 2.01796 2.10605 2.36024 2.42728 2.96938 3.04021 3.36262 3.48202 3.76889 3.95166 3.97660 4.03343 4.10907 4.12995 4.22090 4.31518 4.51130 4.52466 4.57652 4.63726 4.69120 4.71188 4.77971 4.86099 4.91987 4.97981 5.03520 5.06647 5.14401 5.16032 5.29650 5.40472 5.42355 5.72421 5.92186 5.99887 6.24992 6.46169 6.54683 6.63575 6.83340 7.24054 7.27275 7.37029 8.78112 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.027045 B = 0.002292 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.044598 B =12215.730617 C =12641.138531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.505 3.495 3 O -0.598 6.598 4 N -0.706 5.706 5 C 0.141 3.859 6 H 0.098 0.902 7 C -0.119 4.119 8 C 0.090 3.910 9 N -0.587 5.587 10 C 0.526 3.474 11 O -0.535 6.535 12 C 0.507 3.493 13 O -0.546 6.546 14 N -0.584 5.584 15 C 0.108 3.892 16 C -0.114 4.114 17 C 0.233 3.767 18 O -0.590 6.590 19 C -0.555 4.555 20 H 0.069 0.931 21 C 0.026 3.974 22 N -0.917 5.917 23 Si 0.967 3.033 24 H -0.266 1.266 25 H -0.279 1.279 26 H -0.281 1.281 27 C 0.117 3.883 28 C 0.096 3.904 29 H 0.108 0.892 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.422 0.578 33 H 0.123 0.877 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.102 0.898 38 H 0.065 0.935 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.380 0.620 42 H 0.273 0.727 43 H 0.042 0.958 44 H 0.051 0.949 45 H 0.077 0.923 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.207 4.462 10.664 25.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.295 3.705 3 O -0.479 6.479 4 N -0.360 5.360 5 C 0.034 3.966 6 H 0.116 0.884 7 C -0.157 4.157 8 C -0.032 4.032 9 N -0.321 5.321 10 C 0.309 3.691 11 O -0.413 6.413 12 C 0.291 3.709 13 O -0.426 6.426 14 N -0.316 5.316 15 C -0.013 4.013 16 C -0.152 4.152 17 C 0.192 3.808 18 O -0.400 6.400 19 C -0.593 4.593 20 H 0.087 0.913 21 C -0.174 4.174 22 N -0.556 5.556 23 Si 0.792 3.208 24 H -0.190 1.190 25 H -0.205 1.205 26 H -0.206 1.206 27 C -0.005 4.005 28 C -0.027 4.027 29 H 0.127 0.873 30 H 0.121 0.879 31 H 0.116 0.884 32 H 0.261 0.739 33 H 0.141 0.859 34 H 0.122 0.878 35 H 0.112 0.888 36 H 0.096 0.904 37 H 0.120 0.880 38 H 0.083 0.917 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.231 0.769 42 H 0.082 0.918 43 H 0.061 0.939 44 H 0.070 0.930 45 H 0.096 0.904 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -22.096 5.500 10.413 25.038 hybrid contribution 1.294 -1.300 0.073 1.835 sum -20.802 4.201 10.486 23.671 Atomic orbital electron populations 1.21880 0.87906 1.06610 1.05883 1.21707 0.92402 0.82782 0.73642 1.90743 1.72080 1.33379 1.51712 1.45995 1.05499 1.09780 1.74693 1.21784 0.81396 1.00201 0.93187 0.88377 1.23126 0.94146 0.95565 1.02850 1.22835 0.98856 1.00547 0.80947 1.48203 1.29072 1.44363 1.10440 1.19594 0.83357 0.82693 0.83485 1.90694 1.70505 1.50096 1.29976 1.19957 0.84148 0.83580 0.83265 1.90655 1.70888 1.51366 1.29687 1.48695 1.28661 1.43595 1.10624 1.22618 1.02209 0.96109 0.80394 1.22827 0.95593 0.98764 0.97977 1.19738 0.85058 0.87779 0.88188 1.86088 1.26451 1.50402 1.77042 1.21831 1.13713 1.02255 1.21467 0.91253 1.25825 0.95886 1.01718 0.94021 1.69674 1.20062 1.40040 1.25852 0.85366 0.78131 0.79033 0.78267 1.18984 1.20459 1.20643 1.22803 0.84739 0.91551 1.01402 1.22532 0.87052 0.93481 0.99615 0.87291 0.87871 0.88407 0.73873 0.85920 0.87786 0.88797 0.90389 0.88014 0.91708 0.89444 0.89190 0.76931 0.91794 0.93915 0.93038 0.90421 0.92211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.86 10.39 71.24 0.74 -0.12 16 2 C 0.51 7.31 7.93 87.66 0.70 8.00 16 3 O -0.60 -15.43 16.83 -3.04 -0.05 -15.48 16 4 N -0.71 -7.02 5.13 -436.91 -2.24 -9.26 16 5 C 0.14 2.06 3.23 46.18 0.15 2.21 16 6 H 0.10 1.71 7.70 -2.39 -0.02 1.70 16 7 C -0.12 -1.28 6.69 31.99 0.21 -1.07 16 8 C 0.09 1.88 6.06 86.86 0.53 2.41 16 9 N -0.59 -15.68 3.33 -813.37 -2.71 -18.38 16 10 C 0.53 18.24 7.88 87.27 0.69 18.92 16 11 O -0.54 -20.08 14.11 -3.24 -0.05 -20.13 16 12 C 0.51 20.33 7.88 87.27 0.69 21.02 16 13 O -0.55 -22.92 14.11 -3.28 -0.05 -22.97 16 14 N -0.58 -25.07 3.33 -813.33 -2.70 -27.77 16 15 C 0.11 4.24 6.05 86.85 0.53 4.76 16 16 C -0.11 -4.64 6.23 31.99 0.20 -4.44 16 17 C 0.23 11.42 0.86 -10.34 -0.01 11.41 16 18 O -0.59 -30.60 13.07 -148.98 -1.95 -32.54 16 19 C -0.55 -28.77 8.12 25.60 0.21 -28.56 16 20 H 0.07 3.51 7.76 -2.91 -0.02 3.48 16 21 C 0.03 1.35 5.28 84.65 0.45 1.80 16 22 N -0.92 -48.66 10.97 21.45 0.24 -48.43 16 23 Si 0.97 41.19 29.54 68.60 2.03 43.22 16 24 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 25 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 26 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 27 C 0.12 5.74 5.54 86.73 0.48 6.22 16 28 C 0.10 2.12 6.62 86.73 0.57 2.69 16 29 H 0.11 -0.13 7.91 -2.39 -0.02 -0.15 16 30 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.10 0.55 8.14 -2.38 -0.02 0.53 16 32 H 0.42 1.16 8.36 -92.71 -0.77 0.38 16 33 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.10 0.78 8.00 -2.39 -0.02 0.76 16 35 H 0.09 2.34 6.16 -2.39 -0.01 2.32 16 36 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.10 3.69 6.16 -2.39 -0.01 3.68 16 38 H 0.06 2.58 8.14 -2.38 -0.02 2.56 16 39 H 0.09 3.35 8.03 -2.39 -0.02 3.33 16 40 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 41 H 0.38 20.35 6.98 -74.06 -0.52 19.83 16 42 H 0.27 13.75 8.31 -92.71 -0.77 12.98 16 43 H 0.04 2.28 8.07 -2.39 -0.02 2.27 16 44 H 0.05 2.68 7.82 -2.39 -0.02 2.66 16 45 H 0.08 1.67 8.03 -2.38 -0.02 1.65 16 46 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -71.56 376.77 -1.62 -73.18 By element: Atomic # 1 Polarization: 33.57 SS G_CDS: -0.26 Total: 33.31 kcal Atomic # 6 Polarization: 39.13 SS G_CDS: 6.13 Total: 45.25 kcal Atomic # 7 Polarization: -96.42 SS G_CDS: -7.42 Total: -103.84 kcal Atomic # 8 Polarization: -89.03 SS G_CDS: -2.09 Total: -91.12 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.22 kcal Total: -71.56 -1.62 -73.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327038280.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.867 kcal (2) G-P(sol) polarization free energy of solvation -71.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds