Wall clock time and date at job start Sat Apr 11 2020 05:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.46834 * 2 1 4 4 C 1.45649 * 117.70429 * 90.00533 * 3 2 1 5 5 C 1.52990 * 110.77554 * 158.09579 * 4 3 2 6 6 N 1.47269 * 108.18345 * 46.72518 * 5 4 3 7 7 C 1.34773 * 121.35270 * 118.22967 * 6 5 4 8 8 O 1.21351 * 119.99716 * 353.24083 * 7 6 5 9 9 C 1.49449 * 120.00430 * 173.24771 * 7 6 5 10 10 O 1.21352 * 119.99713 * 353.77549 * 9 7 6 11 11 N 1.34771 * 120.00406 * 173.76922 * 9 7 6 12 12 C 1.47432 * 125.64598 * 359.69462 * 11 9 7 13 13 C 1.55132 * 104.72044 * 155.81558 * 12 11 9 14 14 C 1.55159 * 101.48481 * 37.29301 * 13 12 11 15 15 O 1.42898 * 110.71694 * 82.70104 * 14 13 12 16 16 C 1.50701 * 110.86867 * 205.89634 * 14 13 12 17 17 H 1.08000 * 119.99826 * 120.24547 * 16 14 13 18 18 C 1.37874 * 120.00705 * 300.23545 * 16 14 13 19 19 N 1.31506 * 120.00807 * 187.01208 * 18 16 14 20 20 Si 1.86803 * 119.99582 * 7.01538 * 18 16 14 21 21 H 1.48499 * 109.47182 * 84.70982 * 20 18 16 22 22 H 1.48491 * 109.47293 * 204.71125 * 20 18 16 23 23 H 1.48501 * 109.47236 * 324.71555 * 20 18 16 24 24 C 1.47016 * 125.64942 * 180.02562 * 11 9 7 25 25 C 1.47050 * 117.29334 * 298.49535 * 6 5 4 26 26 C 1.33381 * 117.70729 * 269.97684 * 3 2 1 27 27 O 1.21279 * 118.48654 * 4.32795 * 26 3 2 28 28 H 1.09004 * 109.47159 * 299.99664 * 1 2 3 29 29 H 1.08999 * 109.47611 * 59.99956 * 1 2 3 30 30 H 1.08999 * 109.47527 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46465 * 240.00617 * 2 1 3 32 32 H 1.08999 * 109.47101 * 120.00176 * 2 1 3 33 33 H 1.09007 * 109.21606 * 37.76300 * 4 3 2 34 34 H 1.09001 * 109.21596 * 278.42873 * 4 3 2 35 35 H 1.09001 * 109.71685 * 287.05550 * 5 4 3 36 36 H 1.08991 * 109.75704 * 166.41901 * 5 4 3 37 37 H 1.08994 * 110.36739 * 274.74503 * 12 11 9 38 38 H 1.08995 * 110.36662 * 37.07197 * 12 11 9 39 39 H 1.09001 * 111.19217 * 279.19158 * 13 12 11 40 40 H 1.09000 * 110.93823 * 155.29138 * 13 12 11 41 41 H 0.96705 * 114.00134 * 185.02223 * 15 14 13 42 42 H 0.97002 * 120.00690 * 180.02562 * 19 18 16 43 43 H 1.09007 * 109.88491 * 300.44069 * 24 11 9 44 44 H 1.09002 * 109.88628 * 61.45487 * 24 11 9 45 45 H 1.09000 * 109.56808 * 162.56669 * 25 6 5 46 46 H 1.09002 * 109.56722 * 282.91932 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2441 2.0196 1.2895 5 6 3.2229 3.1875 1.1529 6 7 2.8117 3.9986 -0.0054 7 6 2.4441 5.2875 0.1362 8 8 2.3291 5.7674 1.2448 9 6 2.1780 6.1258 -1.0721 10 8 2.4010 5.6822 -2.1794 11 7 1.6901 7.3743 -0.9321 12 6 1.3691 8.0328 0.3473 13 6 1.4603 9.5512 0.0429 14 6 0.8769 9.6139 -1.3935 15 8 -0.5514 9.6396 -1.3583 16 6 1.4114 10.8100 -2.1383 17 1 1.9678 10.6717 -3.0536 18 6 1.1902 12.0808 -1.6515 19 7 1.5343 13.1286 -2.3677 20 14 0.4017 12.3142 0.0258 21 1 1.4464 12.2400 1.0786 22 1 -0.2625 13.6412 0.0803 23 1 -0.6056 11.2468 0.2522 24 6 1.3835 8.3026 -2.0301 25 6 2.8127 3.3435 -1.3219 26 6 2.2254 1.9658 -1.1809 27 8 1.9260 1.3588 -2.1872 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8932 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8900 33 1 2.6539 1.2875 1.9854 34 1 1.2952 2.3903 1.6774 35 1 4.2314 2.8054 0.9950 36 1 3.1977 3.7969 2.0562 37 1 0.3617 7.7677 0.6681 38 1 2.0965 7.7550 1.1100 39 1 2.4945 9.8951 0.0599 40 1 0.8484 10.1254 0.7386 41 1 -0.9672 9.6014 -2.2306 42 1 1.3790 14.0227 -2.0250 43 1 2.2837 8.4974 -2.6132 44 1 0.6117 7.8766 -2.6712 45 1 2.2127 3.9267 -2.0204 46 1 3.8355 3.2679 -1.6912 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328427092.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:17 Heat of formation + Delta-G solvation = -103.087595 kcal Electronic energy + Delta-G solvation = -30826.946689 eV Core-core repulsion = 26525.566690 eV Total energy + Delta-G solvation = -4301.379999 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.36831 -40.25467 -38.82556 -37.74017 -36.80537 -35.72767 -34.53583 -32.49149 -31.70769 -30.49594 -30.25922 -28.55816 -27.76882 -26.14970 -24.83568 -23.64565 -22.91935 -21.97163 -20.18420 -19.72911 -18.75145 -17.92752 -17.54749 -17.42808 -16.70047 -16.54800 -16.39437 -15.80912 -15.53615 -15.14358 -14.77365 -14.72127 -14.62147 -14.19222 -13.88216 -13.52651 -13.43282 -13.35839 -13.15961 -13.01479 -12.91650 -12.70142 -12.37453 -12.30301 -12.19315 -11.99465 -11.89340 -11.36367 -11.35788 -11.27779 -10.87645 -10.64725 -10.52690 -10.36539 -10.02880 -9.28546 -9.19526 -9.10340 -9.06030 -8.83480 -8.57825 -8.40046 -6.27404 -4.39598 1.37711 2.02255 2.29269 2.58594 3.16606 3.25610 3.29930 3.38062 3.52254 4.03633 4.12120 4.29997 4.35846 4.57701 4.65749 4.80741 4.90837 5.00834 5.01596 5.07968 5.12342 5.14585 5.26740 5.31334 5.34966 5.39692 5.58936 5.60677 5.69094 5.79440 5.86549 5.93051 6.02982 6.07941 6.32202 6.38062 6.53470 6.57960 6.65589 7.02723 7.03063 7.33640 7.45574 7.62027 7.79018 8.01984 8.13168 8.67356 8.83051 9.35415 10.82875 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024816 B = 0.002726 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.050138 B =10268.274268 C =10551.496097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.103 3.897 3 N -0.606 5.606 4 C 0.101 3.899 5 C 0.095 3.905 6 N -0.597 5.597 7 C 0.521 3.479 8 O -0.506 6.506 9 C 0.511 3.489 10 O -0.528 6.528 11 N -0.570 5.570 12 C 0.094 3.906 13 C -0.133 4.133 14 C 0.217 3.783 15 O -0.573 6.573 16 C -0.553 4.553 17 H 0.080 0.920 18 C 0.091 3.909 19 N -0.883 5.883 20 Si 0.877 3.123 21 H -0.281 1.281 22 H -0.299 1.299 23 H -0.233 1.233 24 C 0.091 3.909 25 C 0.080 3.920 26 C 0.509 3.491 27 O -0.539 6.539 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.116 0.884 37 H 0.071 0.929 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.366 0.634 42 H 0.268 0.732 43 H 0.083 0.917 44 H 0.067 0.933 45 H 0.162 0.838 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.927 -23.111 9.840 25.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.019 4.019 3 N -0.340 5.340 4 C -0.023 4.023 5 C -0.027 4.027 6 N -0.334 5.334 7 C 0.305 3.695 8 O -0.381 6.381 9 C 0.294 3.706 10 O -0.408 6.408 11 N -0.301 5.301 12 C -0.027 4.027 13 C -0.171 4.171 14 C 0.177 3.823 15 O -0.379 6.379 16 C -0.591 4.591 17 H 0.098 0.902 18 C -0.114 4.114 19 N -0.519 5.519 20 Si 0.705 3.295 21 H -0.208 1.208 22 H -0.226 1.226 23 H -0.157 1.157 24 C -0.030 4.030 25 C -0.045 4.045 26 C 0.297 3.703 27 O -0.415 6.415 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.105 0.895 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.090 0.910 35 H 0.104 0.896 36 H 0.134 0.866 37 H 0.090 0.910 38 H 0.113 0.887 39 H 0.108 0.892 40 H 0.098 0.902 41 H 0.213 0.787 42 H 0.078 0.922 43 H 0.101 0.899 44 H 0.085 0.915 45 H 0.178 0.822 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.968 -23.192 9.949 25.312 hybrid contribution -0.334 0.236 0.344 0.535 sum 1.634 -22.956 10.293 25.211 Atomic orbital electron populations 1.22094 0.95645 1.02280 1.02528 1.21548 0.94916 0.82215 1.03245 1.47377 1.65816 1.14878 1.05920 1.21794 1.00262 0.95285 0.84975 1.22079 0.97824 0.91856 0.90954 1.47972 1.66047 1.10299 1.09053 1.20259 0.77354 0.82008 0.89909 1.90716 1.49681 1.71063 1.26594 1.19487 0.80133 0.82175 0.88812 1.90586 1.53288 1.70307 1.26581 1.48473 1.58370 1.12058 1.11174 1.22828 1.01622 0.93117 0.85169 1.23277 1.02380 0.93462 0.97955 1.19986 0.79394 0.91024 0.91900 1.86480 1.20837 1.96730 1.33884 1.21146 1.37795 0.89004 1.11113 0.90226 1.24933 0.93376 0.95537 0.97603 1.69922 1.45981 0.98600 1.37418 0.87052 0.80983 0.77582 0.83883 1.20761 1.22646 1.15680 1.23073 1.01449 0.89644 0.88829 1.22782 1.05359 0.90201 0.86136 1.20517 0.78301 0.88546 0.82981 1.90753 1.51239 1.63913 1.35600 0.92646 0.91995 0.91545 0.89540 0.90505 0.89071 0.91011 0.89630 0.86611 0.91028 0.88656 0.89164 0.90200 0.78653 0.92220 0.89897 0.91520 0.82154 0.87454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.28 10.23 37.16 0.38 -0.90 16 2 C 0.10 0.77 5.88 -4.04 -0.02 0.75 16 3 N -0.61 -5.40 2.81 -174.88 -0.49 -5.89 16 4 C 0.10 0.64 6.57 -4.51 -0.03 0.61 16 5 C 0.10 0.70 6.52 -3.63 -0.02 0.68 16 6 N -0.60 -6.69 2.98 -174.66 -0.52 -7.21 16 7 C 0.52 7.41 7.72 -11.59 -0.09 7.32 16 8 O -0.51 -7.67 13.27 5.50 0.07 -7.60 16 9 C 0.51 8.56 7.76 -11.59 -0.09 8.47 16 10 O -0.53 -9.36 13.62 5.49 0.07 -9.29 16 11 N -0.57 -10.23 3.32 -170.89 -0.57 -10.80 16 12 C 0.09 1.65 6.17 -2.40 -0.01 1.64 16 13 C -0.13 -2.67 4.60 -24.46 -0.11 -2.79 16 14 C 0.22 4.69 0.67 -89.94 -0.06 4.63 16 15 O -0.57 -12.06 10.88 -35.23 -0.38 -12.44 16 16 C -0.55 -14.31 8.82 -34.44 -0.30 -14.62 16 17 H 0.08 2.24 7.84 -52.49 -0.41 1.82 16 18 C 0.09 2.48 5.47 -17.82 -0.10 2.38 16 19 N -0.88 -25.63 13.96 55.43 0.77 -24.86 16 20 Si 0.88 20.74 23.91 -169.99 -4.07 16.67 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.30 -7.24 7.11 56.52 0.40 -6.83 16 23 H -0.23 -5.38 5.41 56.52 0.31 -5.08 16 24 C 0.09 1.78 6.21 -3.07 -0.02 1.77 16 25 C 0.08 0.93 5.85 -5.03 -0.03 0.90 16 26 C 0.51 6.07 7.57 -11.74 -0.09 5.98 16 27 O -0.54 -8.18 16.25 5.56 0.09 -8.09 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.77 7.23 -51.93 -0.38 0.39 16 32 H 0.08 0.36 7.80 -51.93 -0.41 -0.04 16 33 H 0.09 0.31 7.85 -51.92 -0.41 -0.10 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.12 0.85 7.09 -51.93 -0.37 0.48 16 37 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.10 1.57 5.99 -51.93 -0.31 1.26 16 39 H 0.09 1.83 8.04 -51.93 -0.42 1.41 16 40 H 0.08 1.64 4.62 -51.93 -0.24 1.40 16 41 H 0.37 6.65 9.08 45.56 0.41 7.07 16 42 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.08 1.70 7.67 -51.93 -0.40 1.30 16 44 H 0.07 1.24 8.06 -51.93 -0.42 0.82 16 45 H 0.16 2.28 4.91 -52.25 -0.26 2.02 16 46 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 362.17 15.07 5.46 5.46 Total: -1.00 -32.64 362.17 -5.95 -38.58 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -5.79 Total: 8.66 kcal Atomic # 6 Polarization: 17.42 SS G_CDS: -0.60 Total: 16.82 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: -0.81 Total: -48.76 kcal Atomic # 8 Polarization: -37.28 SS G_CDS: -0.15 Total: -37.42 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.07 Total: 16.67 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.64 -5.95 -38.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328427092.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.504 kcal (2) G-P(sol) polarization free energy of solvation -32.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds