Wall clock time and date at job start Sat Apr 11 2020 05:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46495 * 109.47502 * 2 1 4 4 C 1.45650 * 117.70506 * 269.97959 * 3 2 1 5 5 C 1.53472 * 110.73827 * 157.99919 * 4 3 2 6 6 N 1.47261 * 107.93430 * 46.91602 * 5 4 3 7 7 C 1.34772 * 121.35450 * 118.50927 * 6 5 4 8 8 O 1.21345 * 120.00286 * 1.75846 * 7 6 5 9 9 C 1.49453 * 120.00204 * 181.75536 * 7 6 5 10 10 O 1.21348 * 119.99689 * 353.80919 * 9 7 6 11 11 N 1.34778 * 120.00279 * 173.80864 * 9 7 6 12 12 C 1.47025 * 125.64605 * 0.02855 * 11 9 7 13 13 C 1.54323 * 107.26911 * 178.90669 * 12 11 9 14 14 C 1.55157 * 102.94189 * 337.80356 * 13 12 11 15 15 O 1.42899 * 111.00356 * 277.43010 * 14 13 12 16 16 C 1.50699 * 111.00352 * 153.61667 * 14 13 12 17 17 H 1.07997 * 120.00160 * 3.17654 * 16 14 13 18 18 C 1.37881 * 120.00182 * 183.17718 * 16 14 13 19 19 N 1.31510 * 119.99693 * 0.02562 * 18 16 14 20 20 Si 1.86792 * 120.00079 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47510 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46911 * 120.00333 * 20 18 16 23 23 H 1.48500 * 109.47542 * 240.00152 * 20 18 16 24 24 C 1.47526 * 125.63630 * 179.97438 * 11 9 7 25 25 C 1.47047 * 117.29298 * 298.23670 * 6 5 4 26 26 C 1.33378 * 117.70714 * 89.99819 * 3 2 1 27 27 O 1.21282 * 118.48928 * 4.32261 * 26 3 2 28 28 H 1.08998 * 109.47063 * 60.00003 * 1 2 3 29 29 H 1.09000 * 109.47156 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46992 * 299.99935 * 1 2 3 31 31 H 1.09000 * 109.47167 * 239.99718 * 2 1 3 32 32 H 1.09007 * 109.46939 * 119.99796 * 2 1 3 33 33 H 1.08997 * 109.21770 * 278.45512 * 4 3 2 34 34 H 1.09000 * 109.21594 * 37.83135 * 4 3 2 35 35 H 1.08998 * 109.84674 * 287.31434 * 5 4 3 36 36 H 1.09004 * 109.83775 * 166.50586 * 5 4 3 37 37 H 1.08995 * 109.88303 * 59.48738 * 12 11 9 38 38 H 1.09002 * 110.00807 * 298.39336 * 12 11 9 39 39 H 1.08993 * 110.71691 * 219.44087 * 13 12 11 40 40 H 1.09001 * 110.72237 * 96.17005 * 13 12 11 41 41 H 0.96699 * 113.99994 * 176.82376 * 15 14 13 42 42 H 0.97003 * 120.00233 * 180.02562 * 19 18 16 43 43 H 1.09001 * 110.36971 * 85.34754 * 24 11 9 44 44 H 1.08994 * 110.41203 * 322.98717 * 24 11 9 45 45 H 1.09000 * 109.57007 * 162.80955 * 25 6 5 46 46 H 1.08993 * 109.57073 * 283.16714 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2446 2.0194 -1.2895 5 6 2.2146 3.5477 -1.1521 6 7 3.0474 3.9153 0.0054 7 6 4.1404 4.6910 -0.1351 8 8 4.4381 5.1279 -1.2274 9 6 4.9861 5.0133 1.0542 10 8 4.6293 4.6720 2.1627 11 7 6.1449 5.6830 0.8957 12 6 6.6939 6.1545 -0.3841 13 6 8.0157 6.8879 -0.0733 14 6 7.8526 7.2806 1.4189 15 8 7.0919 8.4830 1.5518 16 6 9.1943 7.4166 2.0914 17 1 10.1009 7.2945 1.5173 18 6 9.2645 7.6967 3.4396 19 7 8.1605 7.8447 4.1387 20 14 10.9276 7.8645 4.2733 21 1 12.0058 7.6537 3.2742 22 1 11.0536 9.2240 4.8574 23 1 11.0458 6.8498 5.3511 24 6 7.0719 6.0651 1.9779 25 6 2.6343 3.4067 1.3219 26 6 2.2251 1.9658 1.1808 27 8 2.0767 1.3054 2.1872 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 3.2154 1.7109 -1.6771 34 1 1.4653 1.7085 -1.9853 35 1 1.1907 3.8847 -0.9906 36 1 2.6159 4.0081 -2.0550 37 1 5.9920 6.8405 -0.8583 38 1 6.8859 5.3072 -1.0424 39 1 8.1198 7.7759 -0.6966 40 1 8.8673 6.2205 -0.2056 41 1 6.9223 8.7418 2.4680 42 1 8.2098 8.0422 5.0872 43 1 7.7548 5.2451 2.1997 44 1 6.5163 6.3495 2.8715 45 1 3.4675 3.4828 2.0205 46 1 1.7916 3.9910 1.6910 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328427093.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:20 Heat of formation + Delta-G solvation = -138.659580 kcal Electronic energy + Delta-G solvation = -30837.316290 eV Core-core repulsion = 26534.393774 eV Total energy + Delta-G solvation = -4302.922516 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.36291 -41.27501 -39.98098 -39.03514 -37.70682 -36.66378 -35.88227 -34.20354 -32.32129 -31.99923 -31.02604 -29.73157 -28.73949 -27.52218 -25.92608 -24.82489 -23.90418 -22.83710 -21.54062 -20.98161 -19.74845 -19.18035 -18.82329 -18.38630 -17.76390 -17.53701 -17.23503 -17.00507 -16.86880 -16.40906 -16.24617 -15.97039 -15.68564 -15.08917 -14.86094 -14.73461 -14.68429 -14.52168 -14.33472 -14.06127 -13.78886 -13.52344 -13.42686 -13.32688 -13.22429 -13.00604 -12.87299 -12.61167 -12.52292 -12.38861 -12.26978 -12.11551 -12.08665 -11.93378 -11.51186 -11.22751 -10.69546 -10.47782 -10.24828 -10.08839 -9.82991 -9.65068 -8.26354 -6.42580 0.22005 1.03151 1.39770 1.42272 1.46199 1.56369 1.81874 2.00112 2.19480 2.39188 2.96727 3.00677 3.31592 3.65955 3.76049 4.03842 4.06499 4.07692 4.13811 4.19117 4.26658 4.31754 4.39025 4.48341 4.53642 4.58190 4.65245 4.74649 4.76225 4.84462 4.92855 5.01211 5.02198 5.05711 5.19664 5.27585 5.33876 5.42305 5.43464 5.65821 5.74815 6.02446 6.18733 6.28214 6.49096 6.66151 6.80869 6.93906 7.28379 7.35974 8.79558 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021930 B = 0.002754 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.465196 B =10165.362542 C =10905.667669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.095 3.905 3 N -0.600 5.600 4 C 0.100 3.900 5 C 0.090 3.910 6 N -0.585 5.585 7 C 0.527 3.473 8 O -0.515 6.515 9 C 0.499 3.501 10 O -0.549 6.549 11 N -0.577 5.577 12 C 0.117 3.883 13 C -0.115 4.115 14 C 0.233 3.767 15 O -0.588 6.588 16 C -0.553 4.553 17 H 0.071 0.929 18 C 0.027 3.973 19 N -0.915 5.915 20 Si 0.965 3.035 21 H -0.264 1.264 22 H -0.281 1.281 23 H -0.283 1.283 24 C 0.103 3.897 25 C 0.063 3.937 26 C 0.509 3.491 27 O -0.583 6.583 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.033 0.967 31 H 0.108 0.892 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.134 0.866 35 H 0.107 0.893 36 H 0.124 0.876 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.376 0.624 42 H 0.271 0.729 43 H 0.059 0.941 44 H 0.057 0.943 45 H 0.149 0.851 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.604 -12.360 -14.459 23.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.027 4.027 3 N -0.332 5.332 4 C -0.022 4.022 5 C -0.031 4.031 6 N -0.321 5.321 7 C 0.309 3.691 8 O -0.391 6.391 9 C 0.283 3.717 10 O -0.431 6.431 11 N -0.308 5.308 12 C -0.004 4.004 13 C -0.153 4.153 14 C 0.192 3.808 15 O -0.397 6.397 16 C -0.591 4.591 17 H 0.089 0.911 18 C -0.174 4.174 19 N -0.555 5.555 20 Si 0.790 3.210 21 H -0.188 1.188 22 H -0.207 1.207 23 H -0.209 1.209 24 C -0.019 4.019 25 C -0.061 4.061 26 C 0.297 3.703 27 O -0.464 6.464 28 H 0.094 0.906 29 H 0.100 0.900 30 H 0.052 0.948 31 H 0.127 0.873 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.151 0.849 35 H 0.126 0.874 36 H 0.142 0.858 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.111 0.889 41 H 0.226 0.774 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.165 0.835 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -13.789 -12.646 -14.494 23.668 hybrid contribution 0.742 0.309 1.872 2.037 sum -13.048 -12.337 -12.622 21.949 Atomic orbital electron populations 1.22038 0.94388 1.03247 1.01929 1.21698 0.95564 0.81563 1.03837 1.47466 1.64352 1.15473 1.05880 1.22115 1.04455 0.91521 0.84136 1.22550 0.96209 0.94753 0.89539 1.48001 1.25203 1.48737 1.10125 1.19623 0.81570 0.79703 0.88195 1.90728 1.70412 1.51347 1.26611 1.20272 0.81865 0.79942 0.89633 1.90442 1.71107 1.53897 1.27629 1.48743 1.19206 1.51029 1.11847 1.22208 0.95402 0.99014 0.83820 1.22725 0.96373 1.00389 0.95808 1.19864 0.88275 0.80585 0.92044 1.86100 1.76245 1.44428 1.32899 1.21801 0.92876 1.49970 0.94468 0.91094 1.25809 1.00367 0.93306 0.97911 1.69752 1.28578 1.48265 1.08857 0.85398 0.79799 0.77528 0.78249 1.18812 1.20689 1.20872 1.23138 0.90388 0.98748 0.89613 1.22965 1.06235 0.90196 0.86724 1.20432 0.76578 0.89706 0.83558 1.90721 1.54338 1.63991 1.37321 0.90585 0.90022 0.94771 0.87347 0.91981 0.90659 0.84850 0.87445 0.85782 0.90781 0.89486 0.89542 0.88884 0.77402 0.92002 0.92308 0.92437 0.83450 0.86454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 10.23 71.98 0.74 -1.11 16 2 C 0.10 1.39 5.92 86.38 0.51 1.90 16 3 N -0.60 -10.75 2.81 -825.44 -2.32 -13.07 16 4 C 0.10 1.07 6.51 86.70 0.56 1.64 16 5 C 0.09 1.25 6.56 86.39 0.57 1.81 16 6 N -0.59 -14.05 2.97 -823.94 -2.45 -16.50 16 7 C 0.53 16.25 7.74 87.27 0.68 16.92 16 8 O -0.52 -16.10 13.65 -3.23 -0.04 -16.15 16 9 C 0.50 19.31 7.84 87.27 0.68 20.00 16 10 O -0.55 -23.45 13.35 -3.24 -0.04 -23.50 16 11 N -0.58 -23.61 3.33 -813.12 -2.71 -26.31 16 12 C 0.12 4.17 5.50 86.73 0.48 4.65 16 13 C -0.12 -4.41 6.13 31.78 0.19 -4.21 16 14 C 0.23 11.07 0.88 -10.15 -0.01 11.06 16 15 O -0.59 -29.96 13.17 -148.98 -1.96 -31.93 16 16 C -0.55 -28.05 8.26 25.60 0.21 -27.84 16 17 H 0.07 3.49 7.78 -2.91 -0.02 3.46 16 18 C 0.03 1.38 5.29 84.66 0.45 1.83 16 19 N -0.92 -48.61 10.69 21.45 0.23 -48.38 16 20 Si 0.96 41.04 29.54 68.60 2.03 43.07 16 21 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 22 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 23 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 24 C 0.10 4.89 5.51 86.83 0.48 5.37 16 25 C 0.06 1.70 6.14 85.45 0.52 2.22 16 26 C 0.51 13.48 7.57 87.80 0.66 14.14 16 27 O -0.58 -20.07 16.18 -3.04 -0.05 -20.12 16 28 H 0.08 0.58 8.14 -2.39 -0.02 0.57 16 29 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.03 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.11 0.90 8.01 -2.39 -0.02 0.88 16 32 H 0.06 1.28 7.10 -2.38 -0.02 1.26 16 33 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.13 0.39 8.07 -2.39 -0.02 0.37 16 35 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.12 1.62 7.06 -2.39 -0.02 1.60 16 37 H 0.07 2.65 7.45 -2.39 -0.02 2.63 16 38 H 0.09 2.69 7.83 -2.39 -0.02 2.68 16 39 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 40 H 0.09 3.26 8.03 -2.39 -0.02 3.24 16 41 H 0.38 20.02 7.25 -74.06 -0.54 19.48 16 42 H 0.27 13.78 8.31 -92.71 -0.77 13.01 16 43 H 0.06 2.85 8.03 -2.39 -0.02 2.83 16 44 H 0.06 3.08 7.47 -2.39 -0.02 3.07 16 45 H 0.15 5.09 4.35 -49.02 -0.21 4.88 16 46 H 0.12 2.78 8.14 -2.39 -0.02 2.76 16 Total: -1.00 -67.83 370.79 -0.31 -68.14 By element: Atomic # 1 Polarization: 36.10 SS G_CDS: 0.28 Total: 36.37 kcal Atomic # 6 Polarization: 41.64 SS G_CDS: 6.73 Total: 48.37 kcal Atomic # 7 Polarization: -97.02 SS G_CDS: -7.24 Total: -104.26 kcal Atomic # 8 Polarization: -89.59 SS G_CDS: -2.10 Total: -91.69 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Total: -67.83 -0.31 -68.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328427093.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.517 kcal (2) G-P(sol) polarization free energy of solvation -67.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds