Wall clock time and date at job start Sat Apr 11 2020 05:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.66220 * 2 1 4 4 C 1.50065 * 109.38073 * 120.16334 * 2 1 3 5 5 O 1.21281 * 118.50037 * 287.27769 * 4 2 1 6 6 N 1.33383 * 123.01031 * 107.49804 * 4 2 1 7 7 C 1.46503 * 117.70288 * 184.10135 * 6 4 2 8 8 C 1.45652 * 124.59149 * 4.07730 * 6 4 2 9 9 C 1.52982 * 110.77116 * 338.12307 * 8 6 4 10 10 N 1.47048 * 109.56726 * 239.70372 * 2 1 3 11 11 C 1.34781 * 121.35381 * 102.93846 * 10 2 1 12 12 O 1.21343 * 120.00288 * 181.76130 * 11 10 2 13 13 C 1.49450 * 119.99973 * 1.76641 * 11 10 2 14 14 O 1.21356 * 120.00105 * 353.83773 * 13 11 10 15 15 N 1.34773 * 120.00134 * 174.11707 * 13 11 10 16 16 C 1.47426 * 125.64797 * 359.41485 * 15 13 11 17 17 C 1.55125 * 104.72225 * 155.81890 * 16 15 13 18 18 C 1.55159 * 101.48865 * 37.29626 * 17 16 15 19 19 O 1.42894 * 110.72289 * 82.69353 * 18 17 16 20 20 C 1.50699 * 110.87368 * 205.90090 * 18 17 16 21 21 H 1.08001 * 119.99907 * 355.06096 * 20 18 17 22 22 C 1.37877 * 120.00027 * 175.06314 * 20 18 17 23 23 N 1.31511 * 120.00055 * 359.97438 * 22 20 18 24 24 Si 1.86800 * 120.00079 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47244 * 89.99620 * 24 22 20 26 26 H 1.48500 * 109.47284 * 209.99871 * 24 22 20 27 27 H 1.48506 * 109.47029 * 329.99926 * 24 22 20 28 28 C 1.47024 * 125.64926 * 179.72424 * 15 13 11 29 29 H 1.09001 * 109.46905 * 180.29670 * 1 2 3 30 30 H 1.08996 * 109.47026 * 300.29694 * 1 2 3 31 31 H 1.08999 * 109.47475 * 60.29626 * 1 2 3 32 32 H 1.09005 * 109.47269 * 269.97377 * 7 6 4 33 33 H 1.08998 * 109.47321 * 29.97699 * 7 6 4 34 34 H 1.09001 * 109.47193 * 149.98470 * 7 6 4 35 35 H 1.09003 * 109.21392 * 217.78920 * 8 6 4 36 36 H 1.08997 * 109.21322 * 98.45740 * 8 6 4 37 37 H 1.08997 * 109.72175 * 287.05248 * 9 8 6 38 38 H 1.09000 * 109.71674 * 166.39592 * 9 8 6 39 39 H 1.09003 * 110.36627 * 274.74391 * 16 15 13 40 40 H 1.08995 * 110.36797 * 37.06749 * 16 15 13 41 41 H 1.09004 * 111.19370 * 279.19238 * 17 16 15 42 42 H 1.08998 * 110.93920 * 155.28578 * 17 16 15 43 43 H 0.96702 * 114.00291 * 185.02840 * 19 18 17 44 44 H 0.97000 * 119.99847 * 180.02562 * 23 22 20 45 45 H 1.09005 * 109.87945 * 300.43929 * 28 15 13 46 46 H 1.09001 * 109.88130 * 61.44909 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8967 1.0265 0.0000 4 6 2.0279 -0.7113 1.2239 5 8 1.9213 -0.1585 2.2981 6 7 2.5863 -1.9220 1.1841 7 6 2.9481 -2.5474 2.4586 8 6 2.8612 -2.6660 -0.0375 9 6 1.9783 -2.1709 -1.1846 10 7 2.0224 -0.6990 -1.1963 11 6 2.5001 -0.0202 -2.2583 12 8 2.8706 -0.6206 -3.2455 13 6 2.5736 1.4720 -2.2198 14 8 2.1013 2.0788 -1.2810 15 7 3.1594 2.1441 -3.2305 16 6 3.7762 1.5357 -4.4233 17 6 3.7233 2.6467 -5.5046 18 6 4.0047 3.9159 -4.6577 19 8 5.4088 4.0877 -4.4554 20 6 3.4081 5.1379 -5.3070 21 1 2.9412 5.0601 -6.2778 22 6 3.4582 6.3554 -4.6618 23 7 4.0263 6.4501 -3.4795 24 14 2.7193 7.8703 -5.4670 25 1 1.2946 7.9978 -5.0681 26 1 3.4657 9.0773 -5.0296 27 1 2.8101 7.7402 -6.9435 28 6 3.2948 3.6051 -3.3231 29 1 -0.3633 -1.0277 0.0053 30 1 -0.3633 0.5184 0.8873 31 1 -0.3634 0.5092 -0.8926 32 1 3.9693 -2.2716 2.7217 33 1 2.2670 -2.2050 3.2376 34 1 2.8773 -3.6310 2.3645 35 1 2.6651 -3.7243 0.1352 36 1 3.9087 -2.5356 -0.3089 37 1 0.9528 -2.5068 -1.0308 38 1 2.3546 -2.5578 -2.1316 39 1 4.8086 1.2547 -4.2150 40 1 3.2031 0.6662 -4.7451 41 1 2.7387 2.6976 -5.9695 42 1 4.5000 2.4975 -6.2547 43 1 5.6347 4.8223 -3.8685 44 1 4.0612 7.3066 -3.0254 45 1 2.3091 4.0703 -3.3104 46 1 3.8902 3.9758 -2.4887 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328428223.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:23 Heat of formation + Delta-G solvation = -111.483688 kcal Electronic energy + Delta-G solvation = -31273.569004 eV Core-core repulsion = 26971.824922 eV Total energy + Delta-G solvation = -4301.744081 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.34595 -40.03401 -38.56458 -37.48641 -36.67872 -35.56029 -34.27464 -32.28194 -31.50544 -30.26714 -29.93897 -27.98888 -27.30605 -26.15074 -24.77448 -23.89164 -23.14304 -21.72760 -20.00313 -19.60555 -18.40962 -17.77817 -17.23256 -17.20304 -16.58567 -16.28360 -16.13904 -15.69542 -15.40475 -15.08574 -14.82088 -14.43306 -14.28405 -14.07633 -13.46198 -13.25913 -13.14014 -13.03913 -12.98448 -12.81664 -12.61961 -12.50528 -12.27507 -12.18440 -12.10824 -11.77929 -11.72763 -11.51230 -11.12709 -10.95495 -10.73508 -10.55751 -10.51345 -10.32517 -10.18439 -9.35903 -9.12119 -8.98826 -8.95004 -8.70737 -8.39201 -8.12362 -6.33557 -4.42277 1.56878 2.19548 2.42077 2.72350 3.18896 3.26878 3.29485 3.37491 3.49288 4.14445 4.22634 4.29157 4.41971 4.69844 4.81030 4.94609 4.98251 4.98728 5.17634 5.22239 5.29158 5.40838 5.42714 5.52233 5.54781 5.68673 5.74889 5.82192 5.93362 5.98911 6.04437 6.11356 6.22723 6.45377 6.69514 6.74669 6.77537 6.83516 7.11537 7.14302 7.25887 7.60445 7.67984 7.89392 7.91725 7.97176 8.27532 8.61790 9.23771 9.32932 10.74293 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019627 B = 0.003041 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.237255 B = 9203.826759 C = 9805.457986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.086 3.914 3 H 0.185 0.815 4 C 0.515 3.485 5 O -0.538 6.538 6 N -0.611 5.611 7 C 0.077 3.923 8 C 0.101 3.899 9 C 0.093 3.907 10 N -0.592 5.592 11 C 0.521 3.479 12 O -0.511 6.511 13 C 0.507 3.493 14 O -0.526 6.526 15 N -0.569 5.569 16 C 0.093 3.907 17 C -0.119 4.119 18 C 0.248 3.752 19 O -0.583 6.583 20 C -0.537 4.537 21 H 0.068 0.932 22 C 0.071 3.929 23 N -0.894 5.894 24 Si 0.905 3.095 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.272 1.272 28 C 0.099 3.901 29 H 0.053 0.947 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.116 0.884 39 H 0.069 0.931 40 H 0.091 0.909 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.382 0.618 44 H 0.271 0.729 45 H 0.075 0.925 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.795 -18.776 5.945 20.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.019 4.019 3 H 0.201 0.799 4 C 0.303 3.697 5 O -0.414 6.414 6 N -0.345 5.345 7 C -0.066 4.066 8 C -0.023 4.023 9 C -0.030 4.030 10 N -0.328 5.328 11 C 0.305 3.695 12 O -0.386 6.386 13 C 0.289 3.711 14 O -0.407 6.407 15 N -0.299 5.299 16 C -0.029 4.029 17 C -0.157 4.157 18 C 0.207 3.793 19 O -0.392 6.392 20 C -0.576 4.576 21 H 0.086 0.914 22 C -0.133 4.133 23 N -0.533 5.533 24 Si 0.732 3.268 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.197 1.197 28 C -0.022 4.022 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.109 0.891 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.134 0.866 39 H 0.087 0.913 40 H 0.109 0.891 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.233 0.767 44 H 0.081 0.919 45 H 0.093 0.907 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.831 -18.872 6.207 20.233 hybrid contribution -0.381 1.123 0.151 1.196 sum -4.212 -17.749 6.359 19.319 Atomic orbital electron populations 1.21909 0.91933 1.02109 1.04211 1.22780 0.97243 1.02031 0.79798 0.79921 1.20369 0.77222 0.80801 0.91338 1.90734 1.56609 1.64132 1.29923 1.47239 1.61564 1.17915 1.07789 1.21741 1.01382 0.97335 0.86102 1.21808 1.00325 0.96303 0.83851 1.22044 1.00860 0.79867 1.00232 1.48169 1.61817 1.06468 1.16393 1.20369 0.77505 0.89047 0.82612 1.90688 1.46806 1.70131 1.30954 1.19493 0.81053 0.87249 0.83277 1.90411 1.48664 1.68860 1.32744 1.48749 1.51680 1.10285 1.19227 1.22782 0.98202 0.97228 0.84651 1.22848 1.01924 0.94142 0.96826 1.19523 0.79613 0.91958 0.88165 1.86129 1.24624 1.56443 1.71988 1.21491 1.38567 0.92514 1.04991 0.91385 1.25081 0.94185 0.99431 0.94588 1.69682 1.43504 1.26479 1.13643 0.86383 0.79135 0.81573 0.79729 1.20389 1.20969 1.19662 1.23315 1.02471 0.74399 1.02002 0.92761 0.90133 0.90696 0.92561 0.90239 0.91210 0.89123 0.91028 0.89849 0.86629 0.91297 0.89058 0.90333 0.90258 0.76742 0.91902 0.90653 0.90844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.37 37.15 0.35 -1.33 16 2 C 0.09 1.20 2.66 -69.09 -0.18 1.01 16 3 H 0.19 3.13 4.36 -54.82 -0.24 2.90 16 4 C 0.52 7.16 6.81 -11.91 -0.08 7.08 16 5 O -0.54 -9.16 16.25 5.56 0.09 -9.07 16 6 N -0.61 -6.44 3.20 -182.93 -0.59 -7.03 16 7 C 0.08 0.65 10.19 59.85 0.61 1.26 16 8 C 0.10 0.77 6.57 -4.51 -0.03 0.74 16 9 C 0.09 0.82 6.40 -3.63 -0.02 0.79 16 10 N -0.59 -7.66 2.63 -167.27 -0.44 -8.10 16 11 C 0.52 8.26 7.74 -11.58 -0.09 8.17 16 12 O -0.51 -8.34 13.24 5.50 0.07 -8.27 16 13 C 0.51 9.60 7.83 -11.59 -0.09 9.51 16 14 O -0.53 -10.70 13.42 5.49 0.07 -10.63 16 15 N -0.57 -11.47 3.32 -170.88 -0.57 -12.04 16 16 C 0.09 1.72 6.18 -2.41 -0.01 1.70 16 17 C -0.12 -2.36 6.24 -24.46 -0.15 -2.51 16 18 C 0.25 5.82 0.85 -89.93 -0.08 5.74 16 19 O -0.58 -14.27 13.07 -35.23 -0.46 -14.73 16 20 C -0.54 -13.66 8.13 -34.44 -0.28 -13.94 16 21 H 0.07 1.70 7.78 -52.49 -0.41 1.30 16 22 C 0.07 1.79 5.28 -17.82 -0.09 1.70 16 23 N -0.89 -23.17 10.96 55.43 0.61 -22.56 16 24 Si 0.90 20.05 29.54 -169.99 -5.02 15.03 16 25 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 28 C 0.10 2.29 5.23 -3.06 -0.02 2.27 16 29 H 0.05 0.53 7.52 -51.93 -0.39 0.14 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.77 7.23 -51.93 -0.38 0.39 16 34 H 0.07 0.37 7.80 -51.93 -0.41 -0.04 16 35 H 0.09 0.40 7.84 -51.93 -0.41 -0.01 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.60 7.53 -51.93 -0.39 0.21 16 38 H 0.12 0.98 7.06 -51.93 -0.37 0.61 16 39 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.09 1.56 5.98 -51.93 -0.31 1.25 16 41 H 0.08 1.48 8.05 -51.93 -0.42 1.07 16 42 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 43 H 0.38 9.54 7.45 45.56 0.34 9.88 16 44 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 45 H 0.08 1.88 7.82 -51.93 -0.41 1.47 16 46 H 0.07 1.84 7.92 -51.93 -0.41 1.43 16 LS Contribution 367.96 15.07 5.55 5.55 Total: -1.00 -30.04 367.96 -6.72 -36.76 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -5.86 Total: 12.90 kcal Atomic # 6 Polarization: 22.37 SS G_CDS: -0.17 Total: 22.20 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: -0.99 Total: -49.73 kcal Atomic # 8 Polarization: -42.47 SS G_CDS: -0.22 Total: -42.70 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.04 -6.72 -36.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328428223.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.726 kcal (2) G-P(sol) polarization free energy of solvation -30.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds