Wall clock time and date at job start Sat Apr 11 2020 05:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.66220 * 2 1 4 4 C 1.50065 * 109.38073 * 120.16334 * 2 1 3 5 5 O 1.21281 * 118.50037 * 287.27769 * 4 2 1 6 6 N 1.33383 * 123.01031 * 107.49804 * 4 2 1 7 7 C 1.46503 * 117.70288 * 184.10135 * 6 4 2 8 8 C 1.45652 * 124.59149 * 4.07730 * 6 4 2 9 9 C 1.52982 * 110.77116 * 338.12307 * 8 6 4 10 10 N 1.47048 * 109.56726 * 239.70372 * 2 1 3 11 11 C 1.34781 * 121.35381 * 102.93846 * 10 2 1 12 12 O 1.21343 * 120.00288 * 181.76130 * 11 10 2 13 13 C 1.49450 * 119.99973 * 1.76641 * 11 10 2 14 14 O 1.21356 * 120.00105 * 353.83773 * 13 11 10 15 15 N 1.34773 * 120.00134 * 174.11707 * 13 11 10 16 16 C 1.47426 * 125.64797 * 359.41485 * 15 13 11 17 17 C 1.55125 * 104.72225 * 155.81890 * 16 15 13 18 18 C 1.55159 * 101.48865 * 37.29626 * 17 16 15 19 19 O 1.42894 * 110.72289 * 82.69353 * 18 17 16 20 20 C 1.50699 * 110.87368 * 205.90090 * 18 17 16 21 21 H 1.08001 * 119.99907 * 355.06096 * 20 18 17 22 22 C 1.37877 * 120.00027 * 175.06314 * 20 18 17 23 23 N 1.31511 * 120.00055 * 359.97438 * 22 20 18 24 24 Si 1.86800 * 120.00079 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47244 * 89.99620 * 24 22 20 26 26 H 1.48500 * 109.47284 * 209.99871 * 24 22 20 27 27 H 1.48506 * 109.47029 * 329.99926 * 24 22 20 28 28 C 1.47024 * 125.64926 * 179.72424 * 15 13 11 29 29 H 1.09001 * 109.46905 * 180.29670 * 1 2 3 30 30 H 1.08996 * 109.47026 * 300.29694 * 1 2 3 31 31 H 1.08999 * 109.47475 * 60.29626 * 1 2 3 32 32 H 1.09005 * 109.47269 * 269.97377 * 7 6 4 33 33 H 1.08998 * 109.47321 * 29.97699 * 7 6 4 34 34 H 1.09001 * 109.47193 * 149.98470 * 7 6 4 35 35 H 1.09003 * 109.21392 * 217.78920 * 8 6 4 36 36 H 1.08997 * 109.21322 * 98.45740 * 8 6 4 37 37 H 1.08997 * 109.72175 * 287.05248 * 9 8 6 38 38 H 1.09000 * 109.71674 * 166.39592 * 9 8 6 39 39 H 1.09003 * 110.36627 * 274.74391 * 16 15 13 40 40 H 1.08995 * 110.36797 * 37.06749 * 16 15 13 41 41 H 1.09004 * 111.19370 * 279.19238 * 17 16 15 42 42 H 1.08998 * 110.93920 * 155.28578 * 17 16 15 43 43 H 0.96702 * 114.00291 * 185.02840 * 19 18 17 44 44 H 0.97000 * 119.99847 * 180.02562 * 23 22 20 45 45 H 1.09005 * 109.87945 * 300.43929 * 28 15 13 46 46 H 1.09001 * 109.88130 * 61.44909 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8967 1.0265 0.0000 4 6 2.0279 -0.7113 1.2239 5 8 1.9213 -0.1585 2.2981 6 7 2.5863 -1.9220 1.1841 7 6 2.9481 -2.5474 2.4586 8 6 2.8612 -2.6660 -0.0375 9 6 1.9783 -2.1709 -1.1846 10 7 2.0224 -0.6990 -1.1963 11 6 2.5001 -0.0202 -2.2583 12 8 2.8706 -0.6206 -3.2455 13 6 2.5736 1.4720 -2.2198 14 8 2.1013 2.0788 -1.2810 15 7 3.1594 2.1441 -3.2305 16 6 3.7762 1.5357 -4.4233 17 6 3.7233 2.6467 -5.5046 18 6 4.0047 3.9159 -4.6577 19 8 5.4088 4.0877 -4.4554 20 6 3.4081 5.1379 -5.3070 21 1 2.9412 5.0601 -6.2778 22 6 3.4582 6.3554 -4.6618 23 7 4.0263 6.4501 -3.4795 24 14 2.7193 7.8703 -5.4670 25 1 1.2946 7.9978 -5.0681 26 1 3.4657 9.0773 -5.0296 27 1 2.8101 7.7402 -6.9435 28 6 3.2948 3.6051 -3.3231 29 1 -0.3633 -1.0277 0.0053 30 1 -0.3633 0.5184 0.8873 31 1 -0.3634 0.5092 -0.8926 32 1 3.9693 -2.2716 2.7217 33 1 2.2670 -2.2050 3.2376 34 1 2.8773 -3.6310 2.3645 35 1 2.6651 -3.7243 0.1352 36 1 3.9087 -2.5356 -0.3089 37 1 0.9528 -2.5068 -1.0308 38 1 2.3546 -2.5578 -2.1316 39 1 4.8086 1.2547 -4.2150 40 1 3.2031 0.6662 -4.7451 41 1 2.7387 2.6976 -5.9695 42 1 4.5000 2.4975 -6.2547 43 1 5.6347 4.8223 -3.8685 44 1 4.0612 7.3066 -3.0254 45 1 2.3091 4.0703 -3.3104 46 1 3.8902 3.9758 -2.4887 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328428223.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:22 Heat of formation + Delta-G solvation = -134.639771 kcal Electronic energy + Delta-G solvation = -31274.573127 eV Core-core repulsion = 26971.824922 eV Total energy + Delta-G solvation = -4302.748204 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.50228 -41.30686 -39.98799 -39.07890 -37.78456 -36.65298 -35.91123 -34.24788 -32.45728 -31.92399 -30.87536 -29.73088 -28.14144 -27.76094 -26.11335 -24.85641 -24.51314 -23.04177 -21.54303 -21.11901 -19.56433 -19.13219 -18.81767 -18.32992 -17.81203 -17.56641 -17.37138 -17.00761 -16.91895 -16.44387 -16.22345 -15.88348 -15.53944 -15.11148 -14.82935 -14.80663 -14.74396 -14.38969 -14.13170 -13.84235 -13.80569 -13.59463 -13.47002 -13.42443 -13.15137 -13.11872 -13.03336 -12.87671 -12.60818 -12.44232 -12.37349 -12.28916 -12.19448 -11.83703 -11.48532 -11.15335 -10.69043 -10.41427 -10.24342 -10.10293 -9.86442 -9.74241 -8.27647 -6.43269 0.19937 1.01075 1.36025 1.42022 1.44566 1.53877 1.80638 1.99394 2.15819 2.38204 2.93574 2.99801 3.25932 3.65437 3.76807 3.96437 4.00746 4.05388 4.08121 4.14933 4.31894 4.35366 4.42151 4.53006 4.57199 4.59449 4.62375 4.65759 4.79183 4.80333 4.90207 4.92331 4.99409 5.05938 5.08781 5.17082 5.30798 5.31772 5.44886 5.67925 5.71983 6.01952 6.17951 6.26072 6.47413 6.64700 6.79273 6.90351 7.25866 7.33951 8.78543 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019627 B = 0.003041 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.237255 B = 9203.826759 C = 9805.457986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.085 3.915 3 H 0.149 0.851 4 C 0.512 3.488 5 O -0.580 6.580 6 N -0.605 5.605 7 C 0.074 3.926 8 C 0.098 3.902 9 C 0.087 3.913 10 N -0.581 5.581 11 C 0.529 3.471 12 O -0.514 6.514 13 C 0.498 3.502 14 O -0.547 6.547 15 N -0.579 5.579 16 C 0.104 3.896 17 C -0.113 4.113 18 C 0.233 3.767 19 O -0.587 6.587 20 C -0.556 4.556 21 H 0.068 0.932 22 C 0.028 3.972 23 N -0.915 5.915 24 Si 0.963 3.037 25 H -0.278 1.278 26 H -0.283 1.283 27 H -0.266 1.266 28 C 0.118 3.882 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.112 0.888 35 H 0.139 0.861 36 H 0.071 0.929 37 H 0.110 0.890 38 H 0.126 0.874 39 H 0.070 0.930 40 H 0.112 0.888 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.376 0.624 44 H 0.271 0.729 45 H 0.048 0.952 46 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.371 -21.966 5.277 23.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.020 4.020 3 H 0.165 0.835 4 C 0.299 3.701 5 O -0.460 6.460 6 N -0.337 5.337 7 C -0.068 4.068 8 C -0.024 4.024 9 C -0.033 4.033 10 N -0.316 5.316 11 C 0.311 3.689 12 O -0.390 6.390 13 C 0.282 3.718 14 O -0.428 6.428 15 N -0.311 5.311 16 C -0.017 4.017 17 C -0.151 4.151 18 C 0.193 3.807 19 O -0.395 6.395 20 C -0.594 4.594 21 H 0.087 0.913 22 C -0.173 4.173 23 N -0.554 5.554 24 Si 0.788 3.212 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.190 1.190 28 C -0.004 4.004 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.131 0.869 35 H 0.157 0.843 36 H 0.090 0.910 37 H 0.128 0.872 38 H 0.144 0.856 39 H 0.088 0.912 40 H 0.129 0.871 41 H 0.105 0.895 42 H 0.110 0.890 43 H 0.225 0.775 44 H 0.080 0.920 45 H 0.066 0.934 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.400 -22.150 5.533 23.251 hybrid contribution -0.193 2.040 0.448 2.097 sum -4.593 -20.110 5.981 21.477 Atomic orbital electron populations 1.21850 0.90288 1.03714 1.03579 1.22509 0.98535 1.00539 0.80440 0.83467 1.20284 0.77598 0.81807 0.90414 1.90713 1.58710 1.65490 1.31103 1.47357 1.59700 1.16849 1.09767 1.21914 1.00642 0.99583 0.84655 1.22099 1.00029 0.98306 0.82003 1.22478 1.02971 0.76455 1.01434 1.48166 1.60207 1.08354 1.14880 1.19596 0.78474 0.87196 0.83599 1.90678 1.47619 1.69505 1.31206 1.20296 0.79984 0.89180 0.82362 1.90450 1.48937 1.70124 1.33279 1.48771 1.52766 1.09063 1.20463 1.22788 0.98494 0.97069 0.83373 1.22849 1.02744 0.92483 0.97019 1.19725 0.78891 0.93248 0.88825 1.86117 1.25434 1.56108 1.71806 1.21798 1.38838 0.93596 1.05185 0.91348 1.25790 0.94564 1.01956 0.95038 1.69787 1.44199 1.26866 1.14519 0.85473 0.78204 0.78430 0.79052 1.20338 1.20841 1.19043 1.22777 1.00208 0.76527 1.00910 0.89960 0.90721 0.91388 0.92823 0.91900 0.86944 0.84290 0.91022 0.87194 0.85574 0.91183 0.87057 0.89486 0.89034 0.77478 0.92009 0.93374 0.93865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 9.37 71.98 0.67 -2.40 16 2 C 0.09 2.34 2.66 43.94 0.12 2.45 16 3 H 0.15 5.28 4.36 -48.26 -0.21 5.07 16 4 C 0.51 13.83 6.81 87.67 0.60 14.43 16 5 O -0.58 -20.12 16.25 -3.03 -0.05 -20.16 16 6 N -0.60 -11.10 3.20 -851.84 -2.73 -13.83 16 7 C 0.07 1.04 10.19 127.77 1.30 2.34 16 8 C 0.10 1.06 6.57 86.53 0.57 1.63 16 9 C 0.09 1.19 6.40 86.23 0.55 1.74 16 10 N -0.58 -13.96 2.63 -801.47 -2.10 -16.07 16 11 C 0.53 16.14 7.74 87.27 0.68 16.82 16 12 O -0.51 -15.62 13.24 -3.22 -0.04 -15.66 16 13 C 0.50 19.21 7.83 87.27 0.68 19.90 16 14 O -0.55 -23.32 13.42 -3.26 -0.04 -23.37 16 15 N -0.58 -23.81 3.32 -812.91 -2.70 -26.52 16 16 C 0.10 3.73 6.18 86.93 0.54 4.27 16 17 C -0.11 -4.39 6.24 32.06 0.20 -4.19 16 18 C 0.23 11.17 0.85 -10.35 -0.01 11.16 16 19 O -0.59 -29.37 13.07 -148.98 -1.95 -31.32 16 20 C -0.56 -28.68 8.13 25.60 0.21 -28.47 16 21 H 0.07 3.44 7.78 -2.91 -0.02 3.41 16 22 C 0.03 1.43 5.28 84.66 0.45 1.88 16 23 N -0.91 -48.89 10.96 21.45 0.24 -48.65 16 24 Si 0.96 41.52 29.54 68.60 2.03 43.54 16 25 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 26 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 27 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 28 C 0.12 5.71 5.23 86.73 0.45 6.16 16 29 H 0.08 1.37 7.52 -2.39 -0.02 1.36 16 30 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 33 H 0.06 1.13 7.23 -2.39 -0.02 1.11 16 34 H 0.11 0.63 7.80 -2.39 -0.02 0.61 16 35 H 0.14 0.31 7.84 -2.39 -0.02 0.29 16 36 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.11 1.01 7.53 -2.39 -0.02 0.99 16 38 H 0.13 1.58 7.06 -2.39 -0.02 1.56 16 39 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 40 H 0.11 3.58 5.98 -2.39 -0.01 3.56 16 41 H 0.09 3.21 8.05 -2.38 -0.02 3.19 16 42 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 43 H 0.38 19.53 7.45 -74.06 -0.55 18.98 16 44 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 45 H 0.05 2.53 7.82 -2.38 -0.02 2.51 16 46 H 0.04 2.30 7.92 -2.39 -0.02 2.28 16 Total: -1.00 -68.37 367.96 -0.08 -68.45 By element: Atomic # 1 Polarization: 35.60 SS G_CDS: 0.27 Total: 35.87 kcal Atomic # 6 Polarization: 40.71 SS G_CDS: 7.01 Total: 47.71 kcal Atomic # 7 Polarization: -97.77 SS G_CDS: -7.30 Total: -105.07 kcal Atomic # 8 Polarization: -88.43 SS G_CDS: -2.08 Total: -90.51 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.54 kcal Total: -68.37 -0.08 -68.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328428223.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.188 kcal (2) G-P(sol) polarization free energy of solvation -68.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds