Wall clock time and date at job start Sat Apr 11 2020 05:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.66023 * 2 1 4 4 C 1.50073 * 109.53063 * 239.92334 * 2 1 3 5 5 O 1.21278 * 118.50366 * 47.49329 * 4 2 1 6 6 N 1.33383 * 123.00598 * 227.66800 * 4 2 1 7 7 C 1.46498 * 117.70478 * 184.14293 * 6 4 2 8 8 C 1.45650 * 124.59125 * 4.16857 * 6 4 2 9 9 C 1.52984 * 110.76968 * 338.07360 * 8 6 4 10 10 N 1.47048 * 109.56746 * 120.29857 * 2 1 3 11 11 C 1.34777 * 121.35358 * 342.58435 * 10 2 1 12 12 O 1.21359 * 119.99834 * 5.60517 * 11 10 2 13 13 C 1.49446 * 120.00023 * 185.33255 * 11 10 2 14 14 O 1.21348 * 120.00083 * 354.87880 * 13 11 10 15 15 N 1.34779 * 119.99975 * 174.87343 * 13 11 10 16 16 C 1.47025 * 125.64887 * 0.02562 * 15 13 11 17 17 C 1.54320 * 107.27055 * 181.01880 * 16 15 13 18 18 C 1.55153 * 102.94427 * 22.19733 * 17 16 15 19 19 O 1.42898 * 111.00795 * 82.56447 * 18 17 16 20 20 C 1.50700 * 111.00597 * 206.38569 * 18 17 16 21 21 H 1.07998 * 119.99744 * 359.97438 * 20 18 17 22 22 C 1.37878 * 120.00230 * 179.97438 * 20 18 17 23 23 N 1.31517 * 119.99897 * 359.97438 * 22 20 18 24 24 Si 1.86796 * 119.99952 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47446 * 60.00072 * 24 22 20 26 26 H 1.48507 * 109.46720 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47362 * 299.99325 * 24 22 20 28 28 C 1.47427 * 125.64926 * 179.71630 * 15 13 11 29 29 H 1.08995 * 109.47788 * 308.75453 * 1 2 3 30 30 H 1.09003 * 109.47352 * 68.75378 * 1 2 3 31 31 H 1.09000 * 109.47198 * 188.74879 * 1 2 3 32 32 H 1.09007 * 109.47438 * 270.02501 * 7 6 4 33 33 H 1.09004 * 109.47318 * 30.02288 * 7 6 4 34 34 H 1.09003 * 109.47217 * 150.02418 * 7 6 4 35 35 H 1.08997 * 109.21419 * 217.74497 * 8 6 4 36 36 H 1.08995 * 109.18188 * 98.38366 * 8 6 4 37 37 H 1.09004 * 109.72164 * 287.05197 * 9 8 6 38 38 H 1.09005 * 109.75835 * 166.41786 * 9 8 6 39 39 H 1.09001 * 109.88466 * 300.44168 * 16 15 13 40 40 H 1.09008 * 109.88033 * 61.60222 * 16 15 13 41 41 H 1.09009 * 110.71878 * 140.55681 * 17 16 15 42 42 H 1.09001 * 110.72538 * 263.64861 * 17 16 15 43 43 H 0.96694 * 114.00404 * 180.02562 * 19 18 17 44 44 H 0.96993 * 120.00249 * 179.97438 * 23 22 20 45 45 H 1.08998 * 110.36771 * 274.74922 * 28 15 13 46 46 H 1.09004 * 110.36574 * 37.07231 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8967 1.0264 0.0000 4 6 2.0317 -0.7088 -1.2239 5 8 1.5465 -0.4229 -2.2980 6 7 2.9845 -1.6414 -1.1842 7 6 3.4518 -2.1925 -2.4586 8 6 3.5927 -2.1506 0.0374 9 6 3.4235 -1.1526 1.1845 10 7 2.0225 -0.6990 1.1963 11 6 1.2226 -0.9205 2.2582 12 8 0.0450 -0.6325 2.2013 13 6 1.7844 -1.5264 3.5034 14 8 2.9372 -1.9045 3.5275 15 7 1.0106 -1.6529 4.5997 16 6 -0.3960 -1.2392 4.7081 17 6 -0.8566 -1.5540 6.1469 18 6 0.4784 -1.6058 6.9357 19 8 0.9077 -0.2933 7.3030 20 6 0.3546 -2.4900 8.1498 21 1 -0.5815 -2.9838 8.3649 22 6 1.4364 -2.6686 8.9858 23 7 2.5765 -2.0677 8.7235 24 14 1.2826 -3.7641 10.4910 25 1 0.9262 -5.1417 10.0664 26 1 2.5771 -3.7902 11.2184 27 1 0.2229 -3.2316 11.3846 28 6 1.4327 -2.2348 5.8868 29 1 -0.3634 0.6432 0.8013 30 1 -0.3634 0.3724 -0.9578 31 1 -0.3633 -1.0157 0.1563 32 1 2.8484 -3.0613 -2.7219 33 1 3.3585 -1.4358 -3.2377 34 1 4.4961 -2.4904 -2.3646 35 1 4.6551 -2.3220 -0.1353 36 1 3.1167 -3.0929 0.3085 37 1 4.0849 -0.3000 1.0308 38 1 3.6613 -1.6364 2.1319 39 1 -0.4838 -0.1698 4.5164 40 1 -1.0025 -1.7968 3.9943 41 1 -1.4994 -0.7606 6.5284 42 1 -1.3686 -2.5155 6.1864 43 1 1.7384 -0.2751 7.7976 44 1 3.3374 -2.1931 9.3117 45 1 1.3188 -3.3187 5.8687 46 1 2.4661 -1.9648 6.1046 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328428226.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:33 Heat of formation + Delta-G solvation = -98.565552 kcal Electronic energy + Delta-G solvation = -31252.922632 eV Core-core repulsion = 26951.738724 eV Total energy + Delta-G solvation = -4301.183909 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.41294 -40.08274 -38.60318 -37.57494 -36.68236 -35.36564 -34.29711 -32.24280 -31.75405 -30.39756 -29.62914 -28.03840 -27.28798 -26.04005 -24.83517 -23.54480 -23.34137 -21.91503 -19.83183 -19.59645 -18.62540 -17.73051 -17.34004 -17.12014 -16.55422 -16.24641 -15.89113 -15.75421 -15.47572 -15.19326 -14.90320 -14.69095 -14.36744 -13.79370 -13.51951 -13.38574 -13.22912 -13.13473 -12.93281 -12.79705 -12.55470 -12.48651 -12.18379 -12.11458 -11.91872 -11.68287 -11.66642 -11.61048 -11.09486 -10.88513 -10.63702 -10.57993 -10.47827 -10.29311 -10.20849 -9.48031 -9.09369 -8.90997 -8.80495 -8.70545 -8.52485 -8.03975 -6.38602 -4.48030 1.58673 2.19265 2.34865 2.69420 3.16470 3.22611 3.24504 3.37637 3.57132 4.12128 4.18694 4.35939 4.56262 4.81361 4.87546 4.89195 4.90590 5.01867 5.06611 5.23196 5.37719 5.47861 5.52860 5.70111 5.70859 5.77343 5.81232 5.86523 5.90753 5.98340 6.10144 6.21604 6.36085 6.41099 6.64567 6.69697 6.75065 6.92103 7.07192 7.11401 7.21476 7.61526 7.64961 7.81997 7.89232 7.93146 8.26226 8.55678 9.21949 9.36611 10.68724 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024211 B = 0.002858 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.224080 B = 9795.562497 C =10497.120498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.132 3.868 3 H 0.107 0.893 4 C 0.513 3.487 5 O -0.543 6.543 6 N -0.607 5.607 7 C 0.076 3.924 8 C 0.101 3.899 9 C 0.035 3.965 10 N -0.592 5.592 11 C 0.518 3.482 12 O -0.503 6.503 13 C 0.512 3.488 14 O -0.530 6.530 15 N -0.565 5.565 16 C 0.109 3.891 17 C -0.122 4.122 18 C 0.250 3.750 19 O -0.582 6.582 20 C -0.538 4.538 21 H 0.068 0.932 22 C 0.071 3.929 23 N -0.896 5.896 24 Si 0.906 3.094 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.274 1.274 28 C 0.088 3.912 29 H 0.091 0.909 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.182 0.818 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.386 0.614 44 H 0.273 0.727 45 H 0.070 0.930 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.618 0.473 -15.212 15.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.026 3.974 3 H 0.124 0.876 4 C 0.300 3.700 5 O -0.420 6.420 6 N -0.340 5.340 7 C -0.066 4.066 8 C -0.023 4.023 9 C -0.086 4.086 10 N -0.329 5.329 11 C 0.302 3.698 12 O -0.377 6.377 13 C 0.295 3.705 14 O -0.411 6.411 15 N -0.294 5.294 16 C -0.013 4.013 17 C -0.160 4.160 18 C 0.209 3.791 19 O -0.392 6.392 20 C -0.576 4.576 21 H 0.087 0.913 22 C -0.132 4.132 23 N -0.535 5.535 24 Si 0.733 3.267 25 H -0.200 1.200 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.033 4.033 29 H 0.110 0.890 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.109 0.891 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.197 0.803 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.239 0.761 44 H 0.083 0.917 45 H 0.088 0.912 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.961 0.784 -16.038 16.176 hybrid contribution 0.820 -0.816 0.896 1.463 sum 2.781 -0.032 -15.142 15.396 Atomic orbital electron populations 1.22116 0.89541 1.04532 1.02838 1.21443 0.98497 0.96287 0.81135 0.87590 1.20236 0.79177 0.79542 0.91067 1.90717 1.56435 1.64943 1.29869 1.47297 1.38689 1.39730 1.08247 1.21757 0.99264 0.99573 0.86043 1.21907 0.99005 0.97969 0.83389 1.23752 0.80725 0.99147 1.05025 1.48052 1.12889 1.57115 1.14865 1.20262 0.86080 0.79280 0.84187 1.90776 1.15385 1.49575 1.81968 1.19587 0.85711 0.81292 0.83918 1.90183 1.17023 1.52420 1.81520 1.48683 1.13151 1.55674 1.11929 1.22215 0.80477 1.00330 0.98306 1.22729 0.98894 1.01964 0.92438 1.19623 0.87356 0.81810 0.90283 1.86091 1.46447 1.29141 1.77561 1.21464 0.98436 1.29185 1.08514 0.91333 1.25087 0.94795 0.95252 0.98065 1.69541 1.02135 1.43190 1.38661 0.86416 0.77549 0.80683 0.82022 1.19972 1.21043 1.19927 1.23642 1.02699 0.97577 0.79347 0.88988 0.91719 0.91535 0.92582 0.90334 0.91031 0.89120 0.91081 0.90666 0.80264 0.91079 0.91321 0.90404 0.90336 0.76146 0.91724 0.91152 0.89315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.73 7.57 37.16 0.28 -1.45 16 2 C 0.13 1.65 3.66 -69.09 -0.25 1.40 16 3 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 4 C 0.51 6.70 7.08 -11.91 -0.08 6.61 16 5 O -0.54 -8.44 15.46 5.56 0.09 -8.36 16 6 N -0.61 -6.55 3.20 -182.94 -0.59 -7.13 16 7 C 0.08 0.65 10.19 59.85 0.61 1.26 16 8 C 0.10 0.93 6.57 -4.51 -0.03 0.90 16 9 C 0.03 0.38 6.38 -3.63 -0.02 0.36 16 10 N -0.59 -7.83 2.98 -167.26 -0.50 -8.33 16 11 C 0.52 8.16 7.59 -11.59 -0.09 8.07 16 12 O -0.50 -8.28 10.02 5.49 0.05 -8.22 16 13 C 0.51 9.19 7.85 -11.59 -0.09 9.10 16 14 O -0.53 -9.78 13.32 5.50 0.07 -9.71 16 15 N -0.56 -10.93 3.33 -170.88 -0.57 -11.50 16 16 C 0.11 1.95 5.49 -3.06 -0.02 1.94 16 17 C -0.12 -2.35 6.12 -24.90 -0.15 -2.50 16 18 C 0.25 5.73 0.89 -89.51 -0.08 5.65 16 19 O -0.58 -14.26 13.19 -35.23 -0.46 -14.73 16 20 C -0.54 -13.24 8.25 -34.44 -0.28 -13.53 16 21 H 0.07 1.65 7.77 -52.49 -0.41 1.25 16 22 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 23 N -0.90 -22.51 10.72 55.43 0.59 -21.91 16 24 Si 0.91 19.41 29.54 -169.99 -5.02 14.39 16 25 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 26 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 27 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 28 C 0.09 1.93 5.64 -2.41 -0.01 1.92 16 29 H 0.09 1.24 6.52 -51.93 -0.34 0.90 16 30 H 0.06 0.81 7.59 -51.93 -0.39 0.42 16 31 H 0.07 0.96 7.20 -51.93 -0.37 0.58 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.75 7.23 -51.93 -0.38 0.37 16 34 H 0.07 0.42 7.80 -51.93 -0.41 0.01 16 35 H 0.09 0.59 7.84 -51.93 -0.41 0.18 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.18 2.36 3.81 -56.67 -0.22 2.14 16 39 H 0.07 1.28 7.71 -51.93 -0.40 0.88 16 40 H 0.07 1.13 7.58 -51.92 -0.39 0.74 16 41 H 0.08 1.45 8.14 -51.92 -0.42 1.03 16 42 H 0.08 1.41 8.02 -51.93 -0.42 0.99 16 43 H 0.39 9.75 6.93 45.56 0.32 10.06 16 44 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 45 H 0.07 1.56 8.04 -51.93 -0.42 1.14 16 46 H 0.09 2.15 7.64 -51.93 -0.40 1.76 16 LS Contribution 362.36 15.07 5.46 5.46 Total: -1.00 -28.12 362.36 -7.06 -35.18 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: -5.88 Total: 13.45 kcal Atomic # 6 Polarization: 21.72 SS G_CDS: -0.32 Total: 21.40 kcal Atomic # 7 Polarization: -47.81 SS G_CDS: -1.06 Total: -48.87 kcal Atomic # 8 Polarization: -40.76 SS G_CDS: -0.25 Total: -41.01 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.02 Total: 14.39 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -28.12 -7.06 -35.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328428226.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.383 kcal (2) G-P(sol) polarization free energy of solvation -28.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds