Wall clock time and date at job start Sat Apr 11 2020 05:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.66023 * 2 1 4 4 C 1.50073 * 109.53063 * 239.92334 * 2 1 3 5 5 O 1.21278 * 118.50366 * 47.49329 * 4 2 1 6 6 N 1.33383 * 123.00598 * 227.66800 * 4 2 1 7 7 C 1.46498 * 117.70478 * 184.14293 * 6 4 2 8 8 C 1.45650 * 124.59125 * 4.16857 * 6 4 2 9 9 C 1.52984 * 110.76968 * 338.07360 * 8 6 4 10 10 N 1.47048 * 109.56746 * 120.29857 * 2 1 3 11 11 C 1.34777 * 121.35358 * 342.58435 * 10 2 1 12 12 O 1.21359 * 119.99834 * 5.60517 * 11 10 2 13 13 C 1.49446 * 120.00023 * 185.33255 * 11 10 2 14 14 O 1.21348 * 120.00083 * 354.87880 * 13 11 10 15 15 N 1.34779 * 119.99975 * 174.87343 * 13 11 10 16 16 C 1.47025 * 125.64887 * 0.02562 * 15 13 11 17 17 C 1.54320 * 107.27055 * 181.01880 * 16 15 13 18 18 C 1.55153 * 102.94427 * 22.19733 * 17 16 15 19 19 O 1.42898 * 111.00795 * 82.56447 * 18 17 16 20 20 C 1.50700 * 111.00597 * 206.38569 * 18 17 16 21 21 H 1.07998 * 119.99744 * 359.97438 * 20 18 17 22 22 C 1.37878 * 120.00230 * 179.97438 * 20 18 17 23 23 N 1.31517 * 119.99897 * 359.97438 * 22 20 18 24 24 Si 1.86796 * 119.99952 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47446 * 60.00072 * 24 22 20 26 26 H 1.48507 * 109.46720 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47362 * 299.99325 * 24 22 20 28 28 C 1.47427 * 125.64926 * 179.71630 * 15 13 11 29 29 H 1.08995 * 109.47788 * 308.75453 * 1 2 3 30 30 H 1.09003 * 109.47352 * 68.75378 * 1 2 3 31 31 H 1.09000 * 109.47198 * 188.74879 * 1 2 3 32 32 H 1.09007 * 109.47438 * 270.02501 * 7 6 4 33 33 H 1.09004 * 109.47318 * 30.02288 * 7 6 4 34 34 H 1.09003 * 109.47217 * 150.02418 * 7 6 4 35 35 H 1.08997 * 109.21419 * 217.74497 * 8 6 4 36 36 H 1.08995 * 109.18188 * 98.38366 * 8 6 4 37 37 H 1.09004 * 109.72164 * 287.05197 * 9 8 6 38 38 H 1.09005 * 109.75835 * 166.41786 * 9 8 6 39 39 H 1.09001 * 109.88466 * 300.44168 * 16 15 13 40 40 H 1.09008 * 109.88033 * 61.60222 * 16 15 13 41 41 H 1.09009 * 110.71878 * 140.55681 * 17 16 15 42 42 H 1.09001 * 110.72538 * 263.64861 * 17 16 15 43 43 H 0.96694 * 114.00404 * 180.02562 * 19 18 17 44 44 H 0.96993 * 120.00249 * 179.97438 * 23 22 20 45 45 H 1.08998 * 110.36771 * 274.74922 * 28 15 13 46 46 H 1.09004 * 110.36574 * 37.07231 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8967 1.0264 0.0000 4 6 2.0317 -0.7088 -1.2239 5 8 1.5465 -0.4229 -2.2980 6 7 2.9845 -1.6414 -1.1842 7 6 3.4518 -2.1925 -2.4586 8 6 3.5927 -2.1506 0.0374 9 6 3.4235 -1.1526 1.1845 10 7 2.0225 -0.6990 1.1963 11 6 1.2226 -0.9205 2.2582 12 8 0.0450 -0.6325 2.2013 13 6 1.7844 -1.5264 3.5034 14 8 2.9372 -1.9045 3.5275 15 7 1.0106 -1.6529 4.5997 16 6 -0.3960 -1.2392 4.7081 17 6 -0.8566 -1.5540 6.1469 18 6 0.4784 -1.6058 6.9357 19 8 0.9077 -0.2933 7.3030 20 6 0.3546 -2.4900 8.1498 21 1 -0.5815 -2.9838 8.3649 22 6 1.4364 -2.6686 8.9858 23 7 2.5765 -2.0677 8.7235 24 14 1.2826 -3.7641 10.4910 25 1 0.9262 -5.1417 10.0664 26 1 2.5771 -3.7902 11.2184 27 1 0.2229 -3.2316 11.3846 28 6 1.4327 -2.2348 5.8868 29 1 -0.3634 0.6432 0.8013 30 1 -0.3634 0.3724 -0.9578 31 1 -0.3633 -1.0157 0.1563 32 1 2.8484 -3.0613 -2.7219 33 1 3.3585 -1.4358 -3.2377 34 1 4.4961 -2.4904 -2.3646 35 1 4.6551 -2.3220 -0.1353 36 1 3.1167 -3.0929 0.3085 37 1 4.0849 -0.3000 1.0308 38 1 3.6613 -1.6364 2.1319 39 1 -0.4838 -0.1698 4.5164 40 1 -1.0025 -1.7968 3.9943 41 1 -1.4994 -0.7606 6.5284 42 1 -1.3686 -2.5155 6.1864 43 1 1.7384 -0.2751 7.7976 44 1 3.3374 -2.1931 9.3117 45 1 1.3188 -3.3187 5.8687 46 1 2.4661 -1.9648 6.1046 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328428226.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:32 Heat of formation + Delta-G solvation = -119.295340 kcal Electronic energy + Delta-G solvation = -31253.821543 eV Core-core repulsion = 26951.738724 eV Total energy + Delta-G solvation = -4302.082820 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.54220 -41.30884 -39.97716 -39.05934 -37.78891 -36.50112 -35.85700 -34.14243 -32.78705 -31.99114 -30.56101 -29.70727 -28.15955 -27.64639 -26.07878 -24.79241 -24.41087 -23.27097 -21.50971 -20.84864 -19.74531 -19.18642 -18.80974 -18.23495 -17.85734 -17.29885 -17.14744 -17.03031 -16.82911 -16.65776 -16.22682 -16.02329 -15.76940 -14.94568 -14.90172 -14.67639 -14.62770 -14.47866 -14.19099 -13.96182 -13.71237 -13.50155 -13.43182 -13.39128 -13.22543 -13.06403 -12.83601 -12.76790 -12.67413 -12.50802 -12.30143 -12.25174 -12.10172 -11.59594 -11.40718 -11.18024 -10.63560 -10.38993 -10.04817 -9.99150 -9.85204 -9.62195 -8.24950 -6.40911 0.26029 0.99758 1.33775 1.46726 1.48353 1.55389 1.78783 2.03452 2.28433 2.41508 2.99298 3.03071 3.25223 3.66885 3.78122 3.84100 3.96399 4.07080 4.09927 4.16082 4.21292 4.33603 4.41570 4.55773 4.61256 4.67107 4.71010 4.80285 4.81712 4.82885 4.88454 4.93965 5.02270 5.08275 5.22187 5.26187 5.35187 5.36103 5.44523 5.77048 5.79824 6.03555 6.17867 6.28499 6.55178 6.67069 6.84155 6.88970 7.31445 7.41647 8.80739 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024211 B = 0.002858 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.224080 B = 9795.562497 C =10497.120498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.132 3.868 3 H 0.126 0.874 4 C 0.510 3.490 5 O -0.573 6.573 6 N -0.604 5.604 7 C 0.074 3.926 8 C 0.103 3.897 9 C 0.032 3.968 10 N -0.585 5.585 11 C 0.522 3.478 12 O -0.513 6.513 13 C 0.508 3.492 14 O -0.538 6.538 15 N -0.575 5.575 16 C 0.118 3.882 17 C -0.117 4.117 18 C 0.234 3.766 19 O -0.590 6.590 20 C -0.556 4.556 21 H 0.069 0.931 22 C 0.030 3.970 23 N -0.915 5.915 24 Si 0.964 3.036 25 H -0.270 1.270 26 H -0.285 1.285 27 H -0.273 1.273 28 C 0.104 3.896 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.105 0.895 35 H 0.128 0.872 36 H 0.068 0.932 37 H 0.096 0.904 38 H 0.164 0.836 39 H 0.070 0.930 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.092 0.908 43 H 0.379 0.621 44 H 0.272 0.728 45 H 0.062 0.938 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.067 -0.018 -16.277 16.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.027 3.973 3 H 0.143 0.857 4 C 0.297 3.703 5 O -0.453 6.453 6 N -0.335 5.335 7 C -0.068 4.068 8 C -0.019 4.019 9 C -0.088 4.088 10 N -0.321 5.321 11 C 0.305 3.695 12 O -0.388 6.388 13 C 0.293 3.707 14 O -0.419 6.419 15 N -0.306 5.306 16 C -0.004 4.004 17 C -0.155 4.155 18 C 0.193 3.807 19 O -0.400 6.400 20 C -0.594 4.594 21 H 0.088 0.912 22 C -0.171 4.171 23 N -0.554 5.554 24 Si 0.789 3.211 25 H -0.195 1.195 26 H -0.210 1.210 27 H -0.198 1.198 28 C -0.018 4.018 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.123 0.877 35 H 0.146 0.854 36 H 0.086 0.914 37 H 0.114 0.886 38 H 0.180 0.820 39 H 0.088 0.912 40 H 0.105 0.895 41 H 0.101 0.899 42 H 0.110 0.890 43 H 0.230 0.770 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.440 0.278 -17.134 17.309 hybrid contribution 0.760 -0.669 1.168 1.546 sum 3.199 -0.391 -15.966 16.288 Atomic orbital electron populations 1.21977 0.90025 1.03354 1.02763 1.21537 0.98171 0.97135 0.80501 0.85701 1.20249 0.79516 0.80029 0.90553 1.90708 1.57671 1.66169 1.30723 1.47402 1.37763 1.38784 1.09580 1.21916 1.01229 0.99052 0.84629 1.22001 1.01079 0.96797 0.82051 1.23764 0.79721 1.00329 1.04976 1.48078 1.13463 1.56328 1.14188 1.19797 0.86110 0.79596 0.84015 1.90778 1.15694 1.50281 1.82048 1.20081 0.85529 0.80803 0.84325 1.90228 1.17352 1.52317 1.82051 1.48678 1.13877 1.56438 1.11597 1.22185 0.79907 1.00498 0.97787 1.22730 0.97226 1.02974 0.92543 1.19862 0.89377 0.80980 0.90490 1.86083 1.46031 1.30346 1.77505 1.21762 0.98572 1.29604 1.09491 0.91242 1.25764 0.94580 0.96360 1.00389 1.69637 1.02506 1.43961 1.39328 0.85518 0.77285 0.79242 0.79047 1.19494 1.21033 1.19836 1.23163 1.00754 0.97017 0.80819 0.89473 0.91345 0.93110 0.92493 0.91443 0.87670 0.85402 0.91397 0.88590 0.81978 0.91182 0.89546 0.89894 0.89000 0.77004 0.91815 0.91955 0.92271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.10 7.57 71.98 0.54 -2.56 16 2 C 0.13 3.07 3.66 43.94 0.16 3.23 16 3 H 0.13 2.48 8.14 -2.39 -0.02 2.46 16 4 C 0.51 12.41 7.08 87.68 0.62 13.03 16 5 O -0.57 -17.19 15.46 -3.02 -0.05 -17.24 16 6 N -0.60 -11.48 3.20 -851.85 -2.73 -14.20 16 7 C 0.07 1.06 10.19 127.77 1.30 2.36 16 8 C 0.10 1.60 6.57 86.53 0.57 2.17 16 9 C 0.03 0.65 6.38 86.23 0.55 1.20 16 10 N -0.58 -14.51 2.98 -801.43 -2.39 -16.90 16 11 C 0.52 15.93 7.59 87.27 0.66 16.59 16 12 O -0.51 -16.38 10.02 -3.27 -0.03 -16.41 16 13 C 0.51 18.08 7.85 87.27 0.69 18.77 16 14 O -0.54 -19.75 13.32 -3.24 -0.04 -19.80 16 15 N -0.58 -22.23 3.33 -812.90 -2.70 -24.93 16 16 C 0.12 4.13 5.49 86.73 0.48 4.61 16 17 C -0.12 -4.41 6.12 31.78 0.19 -4.22 16 18 C 0.23 10.77 0.89 -10.07 -0.01 10.76 16 19 O -0.59 -29.41 13.19 -148.98 -1.97 -31.38 16 20 C -0.56 -27.48 8.25 25.60 0.21 -27.27 16 21 H 0.07 3.33 7.77 -2.91 -0.02 3.31 16 22 C 0.03 1.49 5.30 84.65 0.45 1.93 16 23 N -0.91 -46.66 10.72 21.45 0.23 -46.43 16 24 Si 0.96 39.70 29.54 68.60 2.03 41.73 16 25 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 26 H -0.28 -11.63 7.11 99.48 0.71 -10.93 16 27 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 28 C 0.10 4.66 5.64 86.93 0.49 5.16 16 29 H 0.09 2.27 6.52 -2.39 -0.02 2.26 16 30 H 0.07 1.66 7.59 -2.39 -0.02 1.64 16 31 H 0.05 1.42 7.20 -2.39 -0.02 1.41 16 32 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.07 1.16 7.23 -2.39 -0.02 1.14 16 34 H 0.10 0.80 7.80 -2.39 -0.02 0.79 16 35 H 0.13 1.10 7.84 -2.39 -0.02 1.08 16 36 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.16 4.02 3.81 -77.55 -0.30 3.73 16 39 H 0.07 2.47 7.71 -2.39 -0.02 2.45 16 40 H 0.09 2.72 7.58 -2.38 -0.02 2.70 16 41 H 0.08 3.02 8.14 -2.38 -0.02 3.00 16 42 H 0.09 3.18 8.02 -2.39 -0.02 3.17 16 43 H 0.38 19.70 6.93 -74.06 -0.51 19.18 16 44 H 0.27 13.34 8.31 -92.71 -0.77 12.57 16 45 H 0.06 2.82 8.04 -2.39 -0.02 2.80 16 46 H 0.06 2.96 7.64 -2.38 -0.02 2.95 16 Total: -1.00 -60.68 362.36 -0.52 -61.20 By element: Atomic # 1 Polarization: 38.37 SS G_CDS: 0.22 Total: 38.60 kcal Atomic # 6 Polarization: 38.86 SS G_CDS: 6.91 Total: 45.77 kcal Atomic # 7 Polarization: -94.87 SS G_CDS: -7.59 Total: -102.46 kcal Atomic # 8 Polarization: -82.74 SS G_CDS: -2.09 Total: -84.82 kcal Atomic # 14 Polarization: 39.70 SS G_CDS: 2.03 Total: 41.73 kcal Total: -60.68 -0.52 -61.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328428226.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.096 kcal (2) G-P(sol) polarization free energy of solvation -60.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds