Wall clock time and date at job start Sat Apr 11 2020 05:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.45757 * 117.94922 * 2 1 4 4 C 1.52913 * 110.49184 * 160.92666 * 3 2 1 5 5 H 1.09000 * 109.73690 * 290.91638 * 4 3 2 6 6 N 1.46491 * 109.60603 * 170.50813 * 4 3 2 7 7 C 1.34777 * 120.00357 * 85.81365 * 6 4 3 8 8 O 1.21358 * 119.99487 * 359.97438 * 7 6 4 9 9 C 1.49452 * 120.00413 * 180.02562 * 7 6 4 10 10 O 1.21345 * 119.99873 * 359.97438 * 9 7 6 11 11 N 1.34780 * 119.99821 * 179.97438 * 9 7 6 12 12 C 1.47024 * 125.64847 * 359.68794 * 11 9 7 13 13 C 1.54327 * 107.26774 * 179.20685 * 12 11 9 14 14 C 1.55155 * 102.94571 * 337.80617 * 13 12 11 15 15 O 1.42904 * 111.00600 * 277.43113 * 14 13 12 16 16 C 1.50695 * 111.00698 * 153.57332 * 14 13 12 17 17 H 1.08007 * 119.99678 * 6.35538 * 16 14 13 18 18 C 1.37878 * 120.00238 * 186.35131 * 16 14 13 19 19 N 1.31508 * 119.99866 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 119.99894 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47139 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47004 * 119.99806 * 20 18 16 23 23 H 1.48497 * 109.47163 * 239.99841 * 20 18 16 24 24 C 1.47426 * 125.64645 * 179.97438 * 11 9 7 25 25 C 1.53349 * 108.67408 * 50.74875 * 4 3 2 26 26 C 1.53066 * 108.42807 * 292.47025 * 25 4 3 27 27 C 1.33357 * 117.94567 * 180.02562 * 2 1 3 28 28 O 1.21271 * 118.24737 * 2.23929 * 27 2 1 29 29 H 1.08999 * 109.46737 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46969 * 300.00081 * 1 2 3 31 31 H 1.09001 * 109.46784 * 59.99881 * 1 2 3 32 32 H 1.08998 * 109.29826 * 40.61096 * 3 2 1 33 33 H 1.09008 * 109.29708 * 281.24036 * 3 2 1 34 34 H 0.97004 * 120.00350 * 265.81195 * 6 4 3 35 35 H 1.08995 * 109.88316 * 298.62177 * 12 11 9 36 36 H 1.09002 * 109.88101 * 59.79072 * 12 11 9 37 37 H 1.08999 * 110.71564 * 219.44370 * 13 12 11 38 38 H 1.09000 * 110.86856 * 96.24526 * 13 12 11 39 39 H 0.96692 * 114.00320 * 173.64830 * 15 14 13 40 40 H 0.97005 * 120.00309 * 180.02562 * 19 18 16 41 41 H 1.09002 * 110.36518 * 322.69812 * 24 11 9 42 42 H 1.08997 * 110.36787 * 85.02191 * 24 11 9 43 43 H 1.09002 * 109.67226 * 52.20967 * 25 4 3 44 44 H 1.08997 * 109.67386 * 172.69970 * 25 4 3 45 45 H 1.09000 * 109.40097 * 169.02693 * 26 25 4 46 46 H 1.09004 * 109.40539 * 288.77335 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1482 1.2876 0.0000 4 6 3.5949 1.1260 0.4681 5 1 3.6128 0.8740 1.5284 6 7 4.3254 2.3765 0.2478 7 6 4.2878 3.3517 1.1773 8 8 3.6484 3.1940 2.1966 9 6 5.0326 4.6277 0.9523 10 8 5.6716 4.7856 -0.0672 11 7 4.9945 5.6031 1.8816 12 6 4.2581 5.5471 3.1529 13 6 4.5231 6.8741 3.8947 14 6 5.8477 7.3703 3.2570 15 8 6.9768 6.7418 3.8669 16 6 5.9578 8.8710 3.3390 17 1 5.2205 9.4373 3.8888 18 6 6.9997 9.5211 2.7123 19 7 7.8971 8.8316 2.0424 20 14 7.1365 11.3813 2.8146 21 1 6.0107 11.9168 3.6214 22 1 8.4239 11.7483 3.4574 23 1 7.0841 11.9575 1.4470 24 6 5.6796 6.9052 1.7891 25 6 4.2493 -0.0014 -0.3397 26 6 3.5839 -1.3240 0.0486 27 6 2.0900 -1.1781 -0.0005 28 8 1.4160 -2.1853 -0.0427 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6271 1.9718 0.6696 33 1 2.1399 1.6998 -1.0091 34 1 4.8363 2.5027 -0.5671 35 1 3.1912 5.4376 2.9587 36 1 4.6158 4.7096 3.7519 37 1 4.6511 6.6998 4.9630 38 1 3.7180 7.5867 3.7154 39 1 7.8194 6.9456 3.4387 40 1 8.6304 9.2889 1.6018 41 1 6.6538 6.7884 1.3143 42 1 5.0687 7.6167 1.2335 43 1 4.1088 0.1813 -1.4051 44 1 5.3144 -0.0452 -0.1124 45 1 3.8943 -2.1035 -0.6473 46 1 3.8881 -1.5997 1.0584 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329333604.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:41 Heat of formation + Delta-G solvation = -141.813223 kcal Electronic energy + Delta-G solvation = -30173.525978 eV Core-core repulsion = 25870.466710 eV Total energy + Delta-G solvation = -4303.059268 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.09994 -40.28413 -38.69690 -37.28809 -37.00016 -35.12960 -34.33076 -33.17234 -32.30218 -30.30252 -29.37053 -27.97604 -27.47022 -25.96916 -24.87950 -23.86168 -22.58387 -21.56878 -20.04413 -19.69125 -18.97385 -17.54842 -17.19821 -17.11912 -16.86337 -16.65178 -16.16999 -15.75463 -15.28716 -15.16735 -14.84936 -14.63167 -14.37722 -14.19549 -14.02148 -13.67576 -13.13225 -13.09087 -13.00709 -12.90078 -12.72568 -12.38013 -12.33640 -12.17194 -11.86011 -11.71645 -11.58865 -11.38906 -11.20060 -11.11151 -10.85119 -10.64019 -10.50418 -10.26123 -10.07493 -9.54521 -9.44074 -9.26704 -9.09721 -8.76213 -8.46769 -7.98808 -6.34896 -4.44317 1.63439 2.26572 2.31511 2.73309 3.15743 3.25111 3.28469 3.45790 3.71406 4.09236 4.17991 4.20987 4.23260 4.46245 4.59962 4.77911 4.86463 4.92943 5.03918 5.12205 5.17091 5.25990 5.34122 5.42128 5.47707 5.56269 5.60399 5.72384 5.76258 5.92690 5.98968 6.02249 6.23708 6.45056 6.67366 6.70346 6.77579 7.01910 7.04953 7.13270 7.25222 7.67282 7.71548 7.78271 7.93762 7.95313 8.33176 8.60332 9.22839 9.31415 10.72336 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.029587 B = 0.002279 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.149514 B =12283.904611 C =12544.581455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.602 5.602 3 C 0.101 3.899 4 C 0.132 3.868 5 H 0.103 0.897 6 N -0.702 5.702 7 C 0.513 3.487 8 O -0.512 6.512 9 C 0.507 3.493 10 O -0.537 6.537 11 N -0.573 5.573 12 C 0.111 3.889 13 C -0.122 4.122 14 C 0.248 3.752 15 O -0.581 6.581 16 C -0.536 4.536 17 H 0.069 0.931 18 C 0.071 3.929 19 N -0.893 5.893 20 Si 0.904 3.096 21 H -0.271 1.271 22 H -0.281 1.281 23 H -0.282 1.282 24 C 0.092 3.908 25 C -0.134 4.134 26 C -0.129 4.129 27 C 0.514 3.486 28 O -0.556 6.556 29 H 0.093 0.907 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.416 0.584 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.381 0.619 40 H 0.270 0.730 41 H 0.091 0.909 42 H 0.068 0.932 43 H 0.080 0.920 44 H 0.091 0.909 45 H 0.108 0.892 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.860 -14.763 -5.236 17.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.335 5.335 3 C -0.023 4.023 4 C 0.026 3.974 5 H 0.121 0.879 6 N -0.357 5.357 7 C 0.295 3.705 8 O -0.386 6.386 9 C 0.289 3.711 10 O -0.416 6.416 11 N -0.304 5.304 12 C -0.012 4.012 13 C -0.160 4.160 14 C 0.208 3.792 15 O -0.389 6.389 16 C -0.574 4.574 17 H 0.087 0.913 18 C -0.133 4.133 19 N -0.532 5.532 20 Si 0.732 3.268 21 H -0.195 1.195 22 H -0.207 1.207 23 H -0.208 1.208 24 C -0.029 4.029 25 C -0.172 4.172 26 C -0.169 4.169 27 C 0.303 3.697 28 O -0.435 6.435 29 H 0.111 0.889 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.104 0.896 33 H 0.091 0.909 34 H 0.253 0.747 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.231 0.769 40 H 0.080 0.920 41 H 0.110 0.890 42 H 0.087 0.913 43 H 0.099 0.901 44 H 0.109 0.891 45 H 0.127 0.873 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -9.616 -15.554 -4.792 18.904 hybrid contribution 0.788 1.461 -0.833 1.857 sum -8.828 -14.093 -5.625 17.555 Atomic orbital electron populations 1.21812 0.79151 1.04735 1.01665 1.47091 1.07763 1.05760 1.72930 1.21835 0.93124 0.84837 1.02554 1.21178 0.90165 0.83859 1.02152 0.87905 1.45638 1.51586 1.15263 1.23174 1.20546 0.81476 0.85119 0.83376 1.90748 1.41152 1.80113 1.26555 1.19467 0.83321 0.84090 0.84197 1.90736 1.43330 1.80430 1.27059 1.48690 1.47059 1.16484 1.18210 1.22157 0.95377 0.99418 0.84210 1.22712 0.98610 0.94707 0.99952 1.19646 0.83119 0.90895 0.85590 1.86132 1.18542 1.74298 1.59971 1.21495 1.11313 0.90819 1.33795 0.91314 1.25091 0.95067 0.99400 0.93726 1.69712 1.13883 1.36243 1.33373 0.86333 0.78259 0.84290 0.77943 1.19548 1.20728 1.20772 1.23517 0.97502 0.79468 1.02420 1.21991 1.01475 0.92765 1.00929 1.21592 0.90748 0.98982 1.05551 1.20221 0.91070 0.82753 0.75628 1.90706 1.66355 1.35699 1.50703 0.88874 0.91890 0.92054 0.89605 0.90930 0.74718 0.91735 0.91112 0.90510 0.90304 0.76927 0.91996 0.89021 0.91342 0.90083 0.89069 0.87334 0.87643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.56 10.48 59.85 0.63 1.18 16 2 N -0.60 -5.48 3.21 -182.85 -0.59 -6.06 16 3 C 0.10 0.84 5.99 -4.49 -0.03 0.81 16 4 C 0.13 1.12 2.53 -67.80 -0.17 0.95 16 5 H 0.10 1.01 7.56 -51.93 -0.39 0.62 16 6 N -0.70 -7.42 5.08 -54.11 -0.27 -7.69 16 7 C 0.51 7.56 7.83 -11.58 -0.09 7.47 16 8 O -0.51 -8.19 13.79 5.49 0.08 -8.11 16 9 C 0.51 9.34 7.91 -11.58 -0.09 9.25 16 10 O -0.54 -10.84 16.74 5.50 0.09 -10.74 16 11 N -0.57 -11.38 3.33 -171.03 -0.57 -11.95 16 12 C 0.11 2.01 5.49 -3.06 -0.02 2.00 16 13 C -0.12 -2.38 6.13 -24.90 -0.15 -2.53 16 14 C 0.25 5.77 0.87 -89.64 -0.08 5.70 16 15 O -0.58 -14.29 13.16 -35.23 -0.46 -14.76 16 16 C -0.54 -13.42 8.27 -34.44 -0.28 -13.70 16 17 H 0.07 1.70 7.79 -52.48 -0.41 1.29 16 18 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 19 N -0.89 -22.88 10.69 55.43 0.59 -22.28 16 20 Si 0.90 19.71 29.54 -169.99 -5.02 14.69 16 21 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 22 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 24 C 0.09 2.08 5.38 -2.54 -0.01 2.07 16 25 C -0.13 -0.81 5.51 -26.52 -0.15 -0.96 16 26 C -0.13 -0.88 6.03 -28.10 -0.17 -1.05 16 27 C 0.51 5.24 7.47 -11.87 -0.09 5.15 16 28 O -0.56 -7.64 15.95 5.56 0.09 -7.56 16 29 H 0.09 0.87 6.59 -51.93 -0.34 0.53 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.79 8.10 -51.93 -0.42 0.37 16 33 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 34 H 0.42 3.95 8.08 -40.82 -0.33 3.62 16 35 H 0.06 1.06 7.70 -51.93 -0.40 0.66 16 36 H 0.07 1.30 7.58 -51.93 -0.39 0.90 16 37 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 38 H 0.08 1.43 8.03 -51.93 -0.42 1.02 16 39 H 0.38 9.55 7.57 45.56 0.34 9.90 16 40 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 41 H 0.09 2.31 7.33 -51.93 -0.38 1.93 16 42 H 0.07 1.59 8.03 -51.93 -0.42 1.17 16 43 H 0.08 0.43 8.13 -51.93 -0.42 0.01 16 44 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 375.77 15.07 5.66 5.66 Total: -1.00 -30.52 375.77 -7.27 -37.79 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: -6.07 Total: 13.00 kcal Atomic # 6 Polarization: 18.81 SS G_CDS: -0.80 Total: 18.01 kcal Atomic # 7 Polarization: -47.15 SS G_CDS: -0.84 Total: -47.99 kcal Atomic # 8 Polarization: -40.96 SS G_CDS: -0.21 Total: -41.17 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.69 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.52 -7.27 -37.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329333604.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.019 kcal (2) G-P(sol) polarization free energy of solvation -30.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds