Wall clock time and date at job start Sat Apr 11 2020 05:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.45757 * 117.94922 * 2 1 4 4 C 1.52913 * 110.49184 * 160.92666 * 3 2 1 5 5 H 1.09000 * 109.73690 * 290.91638 * 4 3 2 6 6 N 1.46491 * 109.60603 * 170.50813 * 4 3 2 7 7 C 1.34777 * 120.00357 * 85.81365 * 6 4 3 8 8 O 1.21358 * 119.99487 * 359.97438 * 7 6 4 9 9 C 1.49452 * 120.00413 * 180.02562 * 7 6 4 10 10 O 1.21345 * 119.99873 * 359.97438 * 9 7 6 11 11 N 1.34780 * 119.99821 * 179.97438 * 9 7 6 12 12 C 1.47024 * 125.64847 * 359.68794 * 11 9 7 13 13 C 1.54327 * 107.26774 * 179.20685 * 12 11 9 14 14 C 1.55155 * 102.94571 * 337.80617 * 13 12 11 15 15 O 1.42904 * 111.00600 * 277.43113 * 14 13 12 16 16 C 1.50695 * 111.00698 * 153.57332 * 14 13 12 17 17 H 1.08007 * 119.99678 * 6.35538 * 16 14 13 18 18 C 1.37878 * 120.00238 * 186.35131 * 16 14 13 19 19 N 1.31508 * 119.99866 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 119.99894 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47139 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47004 * 119.99806 * 20 18 16 23 23 H 1.48497 * 109.47163 * 239.99841 * 20 18 16 24 24 C 1.47426 * 125.64645 * 179.97438 * 11 9 7 25 25 C 1.53349 * 108.67408 * 50.74875 * 4 3 2 26 26 C 1.53066 * 108.42807 * 292.47025 * 25 4 3 27 27 C 1.33357 * 117.94567 * 180.02562 * 2 1 3 28 28 O 1.21271 * 118.24737 * 2.23929 * 27 2 1 29 29 H 1.08999 * 109.46737 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46969 * 300.00081 * 1 2 3 31 31 H 1.09001 * 109.46784 * 59.99881 * 1 2 3 32 32 H 1.08998 * 109.29826 * 40.61096 * 3 2 1 33 33 H 1.09008 * 109.29708 * 281.24036 * 3 2 1 34 34 H 0.97004 * 120.00350 * 265.81195 * 6 4 3 35 35 H 1.08995 * 109.88316 * 298.62177 * 12 11 9 36 36 H 1.09002 * 109.88101 * 59.79072 * 12 11 9 37 37 H 1.08999 * 110.71564 * 219.44370 * 13 12 11 38 38 H 1.09000 * 110.86856 * 96.24526 * 13 12 11 39 39 H 0.96692 * 114.00320 * 173.64830 * 15 14 13 40 40 H 0.97005 * 120.00309 * 180.02562 * 19 18 16 41 41 H 1.09002 * 110.36518 * 322.69812 * 24 11 9 42 42 H 1.08997 * 110.36787 * 85.02191 * 24 11 9 43 43 H 1.09002 * 109.67226 * 52.20967 * 25 4 3 44 44 H 1.08997 * 109.67386 * 172.69970 * 25 4 3 45 45 H 1.09000 * 109.40097 * 169.02693 * 26 25 4 46 46 H 1.09004 * 109.40539 * 288.77335 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1482 1.2876 0.0000 4 6 3.5949 1.1260 0.4681 5 1 3.6128 0.8740 1.5284 6 7 4.3254 2.3765 0.2478 7 6 4.2878 3.3517 1.1773 8 8 3.6484 3.1940 2.1966 9 6 5.0326 4.6277 0.9523 10 8 5.6716 4.7856 -0.0672 11 7 4.9945 5.6031 1.8816 12 6 4.2581 5.5471 3.1529 13 6 4.5231 6.8741 3.8947 14 6 5.8477 7.3703 3.2570 15 8 6.9768 6.7418 3.8669 16 6 5.9578 8.8710 3.3390 17 1 5.2205 9.4373 3.8888 18 6 6.9997 9.5211 2.7123 19 7 7.8971 8.8316 2.0424 20 14 7.1365 11.3813 2.8146 21 1 6.0107 11.9168 3.6214 22 1 8.4239 11.7483 3.4574 23 1 7.0841 11.9575 1.4470 24 6 5.6796 6.9052 1.7891 25 6 4.2493 -0.0014 -0.3397 26 6 3.5839 -1.3240 0.0486 27 6 2.0900 -1.1781 -0.0005 28 8 1.4160 -2.1853 -0.0427 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6271 1.9718 0.6696 33 1 2.1399 1.6998 -1.0091 34 1 4.8363 2.5027 -0.5671 35 1 3.1912 5.4376 2.9587 36 1 4.6158 4.7096 3.7519 37 1 4.6511 6.6998 4.9630 38 1 3.7180 7.5867 3.7154 39 1 7.8194 6.9456 3.4387 40 1 8.6304 9.2889 1.6018 41 1 6.6538 6.7884 1.3143 42 1 5.0687 7.6167 1.2335 43 1 4.1088 0.1813 -1.4051 44 1 5.3144 -0.0452 -0.1124 45 1 3.8943 -2.1035 -0.6473 46 1 3.8881 -1.5997 1.0584 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329333604.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:41 Heat of formation + Delta-G solvation = -165.941939 kcal Electronic energy + Delta-G solvation = -30174.572278 eV Core-core repulsion = 25870.466710 eV Total energy + Delta-G solvation = -4304.105568 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.05660 -41.41117 -40.05859 -38.87953 -37.92575 -36.25247 -35.72135 -34.23349 -33.98093 -31.93681 -30.18539 -29.64999 -28.20572 -27.56285 -25.87283 -25.03193 -23.71397 -22.64305 -21.55641 -21.07134 -19.84172 -19.13710 -18.67975 -18.17040 -17.69098 -17.61118 -17.18673 -17.11734 -17.04655 -16.33628 -16.25322 -15.75749 -15.53316 -15.17000 -14.98720 -14.84861 -14.65963 -14.50131 -14.36497 -13.94571 -13.67304 -13.52088 -13.38056 -13.30638 -13.03828 -12.90401 -12.86075 -12.66007 -12.51735 -12.47326 -12.35304 -12.19530 -12.08733 -11.93937 -11.20531 -10.88968 -10.75641 -10.58902 -10.45279 -10.30210 -9.83827 -9.62540 -8.24743 -6.40948 0.33121 1.17464 1.42819 1.47023 1.52971 1.56962 1.92859 2.13212 2.37946 2.50945 3.01640 3.26111 3.46529 3.55171 3.59662 3.78885 3.88902 4.06926 4.15946 4.17080 4.33406 4.34385 4.40843 4.48079 4.55224 4.64661 4.68266 4.75689 4.83809 4.90829 4.96880 4.98891 5.01493 5.08097 5.11253 5.16928 5.29059 5.35355 5.45140 5.75694 5.95956 6.07821 6.32303 6.39444 6.61835 6.68911 6.91664 7.03550 7.28082 7.36016 8.80956 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.029587 B = 0.002279 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.149514 B =12283.904611 C =12544.581455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.602 5.602 3 C 0.104 3.896 4 C 0.132 3.868 5 H 0.094 0.906 6 N -0.679 5.679 7 C 0.524 3.476 8 O -0.524 6.524 9 C 0.502 3.498 10 O -0.559 6.559 11 N -0.583 5.583 12 C 0.120 3.880 13 C -0.117 4.117 14 C 0.232 3.768 15 O -0.587 6.587 16 C -0.553 4.553 17 H 0.069 0.931 18 C 0.029 3.971 19 N -0.914 5.914 20 Si 0.963 3.037 21 H -0.266 1.266 22 H -0.282 1.282 23 H -0.281 1.281 24 C 0.106 3.894 25 C -0.123 4.123 26 C -0.122 4.122 27 C 0.507 3.493 28 O -0.599 6.599 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.424 0.576 35 H 0.086 0.914 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.374 0.626 40 H 0.270 0.730 41 H 0.059 0.941 42 H 0.056 0.944 43 H 0.095 0.905 44 H 0.106 0.894 45 H 0.123 0.877 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.485 -15.223 -5.540 18.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.334 5.334 3 C -0.020 4.020 4 C 0.027 3.973 5 H 0.112 0.888 6 N -0.333 5.333 7 C 0.304 3.696 8 O -0.400 6.400 9 C 0.285 3.715 10 O -0.439 6.439 11 N -0.314 5.314 12 C -0.002 4.002 13 C -0.154 4.154 14 C 0.192 3.808 15 O -0.395 6.395 16 C -0.592 4.592 17 H 0.087 0.913 18 C -0.173 4.173 19 N -0.553 5.553 20 Si 0.789 3.211 21 H -0.190 1.190 22 H -0.208 1.208 23 H -0.207 1.207 24 C -0.016 4.016 25 C -0.161 4.161 26 C -0.162 4.162 27 C 0.297 3.703 28 O -0.481 6.481 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.105 0.895 34 H 0.262 0.738 35 H 0.105 0.895 36 H 0.089 0.911 37 H 0.102 0.898 38 H 0.110 0.890 39 H 0.223 0.777 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.114 0.886 44 H 0.124 0.876 45 H 0.141 0.859 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -10.257 -16.030 -5.109 19.705 hybrid contribution 0.969 1.571 -0.776 2.002 sum -9.288 -14.460 -5.884 18.166 Atomic orbital electron populations 1.21877 0.78813 1.04073 1.02910 1.47188 1.08234 1.05840 1.72117 1.21809 0.92689 0.84278 1.03190 1.21325 0.90394 0.83255 1.02306 0.88796 1.45522 1.50735 1.14815 1.22257 1.19776 0.81303 0.84460 0.84071 1.90752 1.41847 1.80115 1.27240 1.20198 0.82928 0.84999 0.83352 1.90716 1.44195 1.81097 1.27867 1.48705 1.47421 1.16027 1.19293 1.22153 0.96334 0.98476 0.83230 1.22723 0.96795 0.95616 1.00314 1.19871 0.84103 0.90467 0.86401 1.86125 1.18673 1.74489 1.60222 1.21779 1.11491 0.92009 1.33874 0.91331 1.25782 0.94897 1.03106 0.93481 1.69815 1.14172 1.37488 1.33779 0.85423 0.78105 0.79827 0.77768 1.18987 1.20773 1.20703 1.23036 0.95924 0.80943 1.01667 1.21967 1.01900 0.91001 1.01258 1.21612 0.88234 0.99743 1.06604 1.20854 0.92380 0.82312 0.74763 1.90691 1.67523 1.37029 1.52833 0.90446 0.91030 0.90446 0.90326 0.89490 0.73777 0.89534 0.91128 0.89827 0.88988 0.77714 0.92057 0.92216 0.92540 0.88637 0.87571 0.85927 0.86709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.99 10.48 127.77 1.34 2.33 16 2 N -0.60 -9.94 3.21 -851.59 -2.73 -12.68 16 3 C 0.10 1.49 5.99 86.49 0.52 2.01 16 4 C 0.13 1.89 2.53 45.08 0.11 2.01 16 5 H 0.09 1.62 7.56 -2.39 -0.02 1.60 16 6 N -0.68 -12.69 5.08 -443.45 -2.25 -14.94 16 7 C 0.52 14.48 7.83 87.27 0.68 15.16 16 8 O -0.52 -15.72 13.79 -3.27 -0.05 -15.77 16 9 C 0.50 18.10 7.91 87.27 0.69 18.79 16 10 O -0.56 -22.40 16.74 -3.23 -0.05 -22.46 16 11 N -0.58 -22.92 3.33 -813.39 -2.71 -25.63 16 12 C 0.12 4.19 5.49 86.73 0.48 4.66 16 13 C -0.12 -4.42 6.13 31.78 0.19 -4.23 16 14 C 0.23 10.84 0.87 -10.16 -0.01 10.83 16 15 O -0.59 -29.27 13.16 -148.98 -1.96 -31.23 16 16 C -0.55 -27.76 8.27 25.60 0.21 -27.55 16 17 H 0.07 3.36 7.79 -2.91 -0.02 3.33 16 18 C 0.03 1.44 5.29 84.66 0.45 1.88 16 19 N -0.91 -47.57 10.69 21.45 0.23 -47.34 16 20 Si 0.96 40.37 29.54 68.60 2.03 42.40 16 21 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 22 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 23 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 24 C 0.11 4.92 5.38 86.85 0.47 5.38 16 25 C -0.12 -1.09 5.51 30.73 0.17 -0.92 16 26 C -0.12 -1.35 6.03 29.71 0.18 -1.18 16 27 C 0.51 9.59 7.47 87.72 0.66 10.25 16 28 O -0.60 -16.24 15.95 -3.00 -0.05 -16.29 16 29 H 0.08 1.44 6.59 -2.39 -0.02 1.42 16 30 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.08 1.29 8.10 -2.39 -0.02 1.27 16 33 H 0.09 1.03 8.14 -2.38 -0.02 1.02 16 34 H 0.42 6.93 8.08 -92.71 -0.75 6.18 16 35 H 0.09 2.65 7.70 -2.39 -0.02 2.63 16 36 H 0.07 2.48 7.58 -2.39 -0.02 2.46 16 37 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 38 H 0.09 3.21 8.03 -2.39 -0.02 3.19 16 39 H 0.37 19.32 7.57 -74.06 -0.56 18.76 16 40 H 0.27 13.47 8.31 -92.70 -0.77 12.70 16 41 H 0.06 3.12 7.33 -2.39 -0.02 3.10 16 42 H 0.06 2.68 8.03 -2.39 -0.02 2.66 16 43 H 0.10 0.64 8.13 -2.39 -0.02 0.62 16 44 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.11 1.10 8.14 -2.38 -0.02 1.08 16 Total: -1.00 -66.35 375.77 -1.69 -68.04 By element: Atomic # 1 Polarization: 36.75 SS G_CDS: -0.28 Total: 36.47 kcal Atomic # 6 Polarization: 33.29 SS G_CDS: 6.14 Total: 39.43 kcal Atomic # 7 Polarization: -93.13 SS G_CDS: -7.46 Total: -100.59 kcal Atomic # 8 Polarization: -83.64 SS G_CDS: -2.11 Total: -85.74 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 2.03 Total: 42.40 kcal Total: -66.35 -1.69 -68.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329333604.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.902 kcal (2) G-P(sol) polarization free energy of solvation -66.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds