Wall clock time and date at job start Sat Apr 11 2020 05:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46496 * 109.47356 * 2 1 4 4 C 1.34776 * 119.99672 * 273.88861 * 3 2 1 5 5 O 1.21351 * 120.00108 * 185.44740 * 4 3 2 6 6 C 1.49454 * 120.00128 * 5.44422 * 4 3 2 7 7 O 1.21347 * 120.00098 * 5.59089 * 6 4 3 8 8 N 1.34776 * 119.99737 * 185.58673 * 6 4 3 9 9 C 1.47017 * 125.65210 * 359.69540 * 8 6 4 10 10 C 1.54337 * 107.26663 * 178.84520 * 9 8 6 11 11 C 1.55150 * 103.02348 * 338.14356 * 10 9 8 12 12 O 1.42905 * 111.03674 * 277.21956 * 11 10 9 13 13 C 1.50701 * 111.00888 * 153.38118 * 11 10 9 14 14 H 1.07998 * 119.99265 * 6.34704 * 13 11 10 15 15 C 1.37876 * 120.00205 * 186.35262 * 13 11 10 16 16 N 1.31508 * 119.99797 * 359.97438 * 15 13 11 17 17 Si 1.86797 * 119.99891 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47196 * 59.99896 * 17 15 13 19 19 H 1.48501 * 109.46840 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47359 * 299.99703 * 17 15 13 21 21 C 1.47432 * 125.64820 * 179.97438 * 8 6 4 22 22 C 1.46496 * 120.00089 * 93.88353 * 3 2 1 23 23 H 1.08996 * 110.43896 * 358.92148 * 22 3 2 24 24 C 1.54627 * 110.59943 * 236.29175 * 22 3 2 25 25 C 1.54476 * 101.76708 * 216.46861 * 24 22 3 26 26 N 1.46768 * 105.53170 * 25.21394 * 25 24 22 27 27 C 1.34418 * 111.30087 * 343.36343 * 26 25 24 28 28 O 1.21277 * 124.93679 * 180.27965 * 27 26 25 29 29 H 1.08998 * 109.47043 * 300.00337 * 1 2 3 30 30 H 1.08999 * 109.47165 * 60.00244 * 1 2 3 31 31 H 1.08996 * 109.46964 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47043 * 239.99663 * 2 1 3 33 33 H 1.09000 * 109.46818 * 120.00174 * 2 1 3 34 34 H 1.08995 * 109.88540 * 298.39641 * 9 8 6 35 35 H 1.09003 * 109.88288 * 59.55853 * 9 8 6 36 36 H 1.09002 * 110.85127 * 219.67193 * 10 9 8 37 37 H 1.09003 * 110.51177 * 96.45436 * 10 9 8 38 38 H 0.96703 * 114.00160 * 173.66946 * 12 11 10 39 39 H 0.97006 * 120.00257 * 180.02562 * 16 15 13 40 40 H 1.09007 * 110.36317 * 322.94110 * 21 8 6 41 41 H 1.09001 * 110.36353 * 85.25699 * 21 8 6 42 42 H 1.08999 * 110.97136 * 334.59477 * 24 22 3 43 43 H 1.09007 * 110.96464 * 98.31799 * 24 22 3 44 44 H 1.09004 * 110.24728 * 144.41554 * 25 24 22 45 45 H 1.08995 * 110.25055 * 266.33534 * 25 24 22 46 46 H 0.97003 * 124.34266 * 163.21257 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1684 2.0428 -1.1645 5 8 2.6653 3.1499 -1.1738 6 6 1.7229 1.4131 -2.4446 7 8 1.1348 0.3518 -2.4262 8 7 1.9742 2.0240 -3.6194 9 6 2.6682 3.3093 -3.7855 10 6 2.7497 3.5935 -5.3003 11 6 2.5910 2.1842 -5.9295 12 8 3.8377 1.4859 -5.9448 13 6 2.0085 2.2741 -7.3164 14 1 1.8589 3.2392 -7.7776 15 6 1.6664 1.1245 -7.9964 16 7 1.8489 -0.0505 -7.4348 17 14 0.9437 1.2361 -9.7153 18 1 1.9118 1.9114 -10.6164 19 1 0.6644 -0.1306 -10.2245 20 1 -0.3191 2.0163 -9.6717 21 6 1.5936 1.5168 -4.9503 22 6 2.3436 2.0431 1.2658 23 1 2.1478 1.3762 2.1054 24 6 1.5381 3.3543 1.4167 25 6 2.5617 4.2740 2.1186 26 7 3.8809 3.7439 1.7541 27 6 3.7882 2.4924 1.2723 28 8 4.7267 1.8195 0.9018 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 2.1077 4.1004 -3.2876 35 1 3.6730 3.2448 -3.3679 36 1 3.7150 4.0264 -5.5625 37 1 1.9352 4.2482 -5.6105 38 1 3.7704 0.5672 -6.2390 39 1 1.6086 -0.8594 -7.9133 40 1 1.6949 0.4320 -4.9861 41 1 0.5720 1.8113 -5.1906 42 1 1.2580 3.7544 0.4422 43 1 0.6577 3.2016 2.0411 44 1 2.4532 5.2990 1.7640 45 1 2.4269 4.2329 3.1993 46 1 4.7126 4.2345 1.8468 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329455489.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:53 Heat of formation + Delta-G solvation = -124.125607 kcal Electronic energy + Delta-G solvation = -31642.705397 eV Core-core repulsion = 27340.413122 eV Total energy + Delta-G solvation = -4302.292276 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.27470 -39.82500 -38.26960 -37.29936 -36.48047 -35.83441 -34.13455 -32.24730 -31.50015 -30.23419 -29.73442 -27.96380 -27.51981 -25.72496 -24.18107 -22.98136 -22.34679 -21.89834 -20.49941 -19.65667 -18.53667 -17.55498 -17.31681 -17.13044 -16.60669 -16.29187 -15.69774 -15.52662 -15.12154 -14.78478 -14.57335 -14.41559 -14.14853 -13.98679 -13.64790 -13.50692 -13.14648 -13.05594 -12.87203 -12.75531 -12.59053 -12.32377 -12.22825 -11.80251 -11.67292 -11.55534 -11.51407 -11.06138 -10.93985 -10.84470 -10.62188 -10.56575 -10.49611 -10.21538 -10.19189 -9.36345 -9.28598 -8.96513 -8.79197 -8.69361 -8.39643 -7.86789 -6.29483 -4.39215 1.76670 2.17980 2.74681 3.18649 3.21682 3.27410 3.29357 3.54832 3.73178 4.13054 4.22932 4.25559 4.50733 4.65215 4.69551 4.96539 4.98562 5.03145 5.23310 5.38567 5.47795 5.49732 5.55136 5.64233 5.79851 5.82973 5.84014 6.03562 6.07124 6.29308 6.31864 6.45666 6.52232 6.61423 6.72844 6.81625 6.84478 6.85801 7.06265 7.18669 7.30891 7.72080 7.77120 8.00895 8.05057 8.13057 8.46070 8.64603 9.28670 9.37403 10.77636 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020043 B = 0.003246 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.664781 B = 8623.964761 C = 9233.475289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.105 3.895 3 N -0.575 5.575 4 C 0.512 3.488 5 O -0.510 6.510 6 C 0.509 3.491 7 O -0.526 6.526 8 N -0.573 5.573 9 C 0.112 3.888 10 C -0.121 4.121 11 C 0.248 3.752 12 O -0.581 6.581 13 C -0.538 4.538 14 H 0.067 0.933 15 C 0.072 3.928 16 N -0.893 5.893 17 Si 0.905 3.095 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.275 1.275 21 C 0.094 3.906 22 C 0.115 3.885 23 H 0.127 0.873 24 C -0.145 4.145 25 C 0.109 3.891 26 N -0.725 5.725 27 C 0.519 3.481 28 O -0.520 6.520 29 H 0.044 0.956 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.108 0.892 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.381 0.619 39 H 0.271 0.729 40 H 0.091 0.909 41 H 0.067 0.933 42 H 0.097 0.903 43 H 0.093 0.907 44 H 0.082 0.918 45 H 0.072 0.928 46 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.328 5.735 19.791 20.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.017 4.017 3 N -0.310 5.310 4 C 0.296 3.704 5 O -0.385 6.385 6 C 0.291 3.709 7 O -0.405 6.405 8 N -0.305 5.305 9 C -0.011 4.011 10 C -0.159 4.159 11 C 0.208 3.792 12 O -0.389 6.389 13 C -0.576 4.576 14 H 0.085 0.915 15 C -0.132 4.132 16 N -0.532 5.532 17 Si 0.732 3.268 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.200 1.200 21 C -0.027 4.027 22 C 0.007 3.993 23 H 0.145 0.855 24 C -0.183 4.183 25 C -0.016 4.016 26 N -0.382 5.382 27 C 0.303 3.697 28 O -0.395 6.395 29 H 0.064 0.936 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.126 0.874 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.231 0.769 39 H 0.081 0.919 40 H 0.109 0.891 41 H 0.085 0.915 42 H 0.115 0.885 43 H 0.112 0.888 44 H 0.100 0.900 45 H 0.090 0.910 46 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -2.794 5.677 19.806 20.792 hybrid contribution -0.356 -0.298 -0.940 1.048 sum -3.150 5.380 18.866 19.870 Atomic orbital electron populations 1.22115 0.95134 1.02451 1.01950 1.22000 0.95253 0.80171 1.04245 1.47621 1.64476 1.15172 1.03711 1.20526 0.78940 0.85830 0.85120 1.90713 1.41405 1.19802 1.86539 1.19397 0.82146 0.85480 0.83886 1.90676 1.42230 1.21454 1.86187 1.48661 1.53249 1.22293 1.06294 1.22127 0.96928 0.84311 0.97709 1.22707 1.02227 0.98795 0.92177 1.19629 0.81236 0.86508 0.91844 1.86143 1.32707 1.29883 1.90175 1.21424 1.42772 0.93523 0.99882 0.91467 1.25078 0.94322 0.95193 0.98591 1.69700 1.47515 0.97727 1.38220 0.86447 0.79551 0.77295 0.83529 1.19985 1.21084 1.20011 1.23470 0.99812 1.01612 0.77764 1.21749 0.93387 0.95924 0.88211 0.85522 1.23025 0.97949 0.93822 1.03517 1.21966 0.81800 0.98710 0.99106 1.45968 1.10016 1.16312 1.65897 1.20882 0.91087 0.81838 0.75894 1.90764 1.43353 1.58324 1.47042 0.93642 0.91109 0.91568 0.87433 0.91075 0.91691 0.91485 0.90586 0.90399 0.76949 0.91908 0.89075 0.91479 0.88480 0.88827 0.90001 0.90995 0.75025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 9.67 37.16 0.36 -1.46 16 2 C 0.10 1.34 5.67 -4.04 -0.02 1.32 16 3 N -0.58 -8.11 2.51 -166.63 -0.42 -8.53 16 4 C 0.51 8.94 6.85 -11.58 -0.08 8.86 16 5 O -0.51 -9.23 11.54 5.50 0.06 -9.16 16 6 C 0.51 10.18 7.68 -11.58 -0.09 10.09 16 7 O -0.53 -10.84 11.67 5.50 0.06 -10.78 16 8 N -0.57 -12.18 3.33 -171.03 -0.57 -12.74 16 9 C 0.11 2.20 5.49 -3.06 -0.02 2.19 16 10 C -0.12 -2.50 6.13 -24.89 -0.15 -2.65 16 11 C 0.25 6.04 0.87 -89.64 -0.08 5.96 16 12 O -0.58 -15.01 13.16 -35.23 -0.46 -15.47 16 13 C -0.54 -13.89 8.27 -34.44 -0.28 -14.17 16 14 H 0.07 1.70 7.79 -52.49 -0.41 1.29 16 15 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 16 N -0.89 -23.46 10.69 55.43 0.59 -22.87 16 17 Si 0.90 20.14 29.54 -169.99 -5.02 15.12 16 18 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 19 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 21 C 0.09 2.22 5.38 -2.54 -0.01 2.21 16 22 C 0.12 1.27 3.41 -67.94 -0.23 1.04 16 23 H 0.13 1.01 7.81 -51.93 -0.41 0.60 16 24 C -0.14 -1.21 6.43 -25.10 -0.16 -1.37 16 25 C 0.11 0.74 7.78 -3.12 -0.02 0.72 16 26 N -0.73 -7.30 6.24 -59.20 -0.37 -7.67 16 27 C 0.52 7.20 6.51 -10.86 -0.07 7.13 16 28 O -0.52 -9.69 18.02 5.56 0.10 -9.59 16 29 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 1.02 6.46 -51.93 -0.34 0.68 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.11 1.69 5.84 -51.93 -0.30 1.39 16 33 H 0.07 0.72 7.87 -51.93 -0.41 0.31 16 34 H 0.06 1.16 7.59 -51.93 -0.39 0.77 16 35 H 0.07 1.38 7.70 -51.93 -0.40 0.98 16 36 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 37 H 0.08 1.49 8.03 -51.93 -0.42 1.07 16 38 H 0.38 9.99 7.56 45.56 0.34 10.33 16 39 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 40 H 0.09 2.38 7.33 -51.92 -0.38 2.00 16 41 H 0.07 1.61 8.03 -51.93 -0.42 1.19 16 42 H 0.10 1.08 6.24 -51.93 -0.32 0.75 16 43 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.41 3.60 8.96 -40.82 -0.37 3.23 16 LS Contribution 367.84 15.07 5.54 5.54 Total: -1.00 -32.00 367.84 -7.33 -39.33 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: -5.89 Total: 15.22 kcal Atomic # 6 Polarization: 22.56 SS G_CDS: -0.96 Total: 21.60 kcal Atomic # 7 Polarization: -51.04 SS G_CDS: -0.76 Total: -51.81 kcal Atomic # 8 Polarization: -44.77 SS G_CDS: -0.24 Total: -45.00 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.00 -7.33 -39.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329455489.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.800 kcal (2) G-P(sol) polarization free energy of solvation -32.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds