Wall clock time and date at job start Sat Apr 11 2020 05:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42902 * 109.46910 * 2 1 4 4 C 1.35359 * 116.99895 * 179.97438 * 3 2 1 5 5 N 1.30553 * 125.44366 * 180.29707 * 4 3 2 6 6 C 1.36329 * 108.38070 * 180.16192 * 5 4 3 7 7 C 1.47368 * 126.41251 * 179.82472 * 6 5 4 8 8 O 1.21627 * 119.99634 * 186.25214 * 7 6 5 9 9 N 1.34774 * 120.00119 * 6.25259 * 7 6 5 10 10 C 1.47150 * 120.97838 * 356.07472 * 9 7 6 11 11 C 1.53294 * 108.38128 * 129.44877 * 10 9 7 12 12 O 1.42959 * 109.22738 * 52.29724 * 11 10 9 13 13 C 1.42957 * 114.16614 * 297.42048 * 12 11 10 14 14 H 1.08997 * 109.51522 * 302.60116 * 13 12 11 15 15 C 1.53001 * 109.51035 * 182.50150 * 13 12 11 16 16 H 1.09004 * 109.46882 * 180.02562 * 15 13 12 17 17 C 1.53002 * 109.47364 * 60.00518 * 15 13 12 18 18 N 1.46502 * 109.47287 * 300.00046 * 15 13 12 19 19 C 1.36934 * 119.99746 * 205.00101 * 18 15 13 20 20 H 1.07999 * 120.00655 * 359.97438 * 19 18 15 21 21 C 1.38813 * 119.99789 * 180.02562 * 19 18 15 22 22 N 1.31618 * 120.00076 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00265 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47037 * 59.99946 * 23 21 19 25 25 H 1.48497 * 109.47415 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46953 * 300.00119 * 23 21 19 27 27 C 1.47150 * 120.98062 * 176.05730 * 9 7 6 28 28 C 1.35924 * 107.17392 * 359.56459 * 6 5 4 29 29 O 1.34199 * 125.44566 * 359.97422 * 4 3 2 30 30 H 1.09003 * 109.47291 * 300.00087 * 1 2 3 31 31 H 1.09003 * 109.47129 * 60.00181 * 1 2 3 32 32 H 1.08994 * 109.46809 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47948 * 239.99908 * 2 1 3 34 34 H 1.09003 * 109.47129 * 119.99819 * 2 1 3 35 35 H 1.08995 * 109.68804 * 9.72185 * 10 9 7 36 36 H 1.09007 * 109.68058 * 249.16659 * 10 9 7 37 37 H 1.09003 * 109.51484 * 292.37257 * 11 10 9 38 38 H 1.09005 * 109.51516 * 172.22331 * 11 10 9 39 39 H 1.09001 * 109.47151 * 179.97438 * 17 15 13 40 40 H 1.09000 * 109.47026 * 59.99240 * 17 15 13 41 41 H 1.09000 * 109.46353 * 299.99473 * 17 15 13 42 42 H 0.96998 * 119.99881 * 25.00413 * 18 15 13 43 43 H 0.97005 * 120.00464 * 180.02562 * 22 21 19 44 44 H 1.08996 * 109.68148 * 110.83659 * 27 9 7 45 45 H 1.08995 * 109.68643 * 350.27535 * 27 9 7 46 46 H 1.07997 * 126.45541 * 180.29508 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3482 1.5247 0.0005 5 7 3.9594 2.6783 0.0061 6 6 5.3038 2.4526 0.0010 7 6 6.3629 3.4773 0.0009 8 8 7.5277 3.1480 -0.1187 9 7 6.0409 4.7793 0.1334 10 6 4.6350 5.2094 0.1935 11 6 4.4598 6.1198 1.4144 12 8 5.4405 7.1590 1.3713 13 6 6.7902 6.6934 1.4421 14 1 6.9275 6.1120 2.3538 15 6 7.7438 7.8898 1.4506 16 1 8.7727 7.5340 1.5041 17 6 7.4449 8.7717 2.6646 18 7 7.5603 8.6693 0.2237 19 6 8.5824 9.4457 -0.2534 20 1 9.5236 9.4839 0.2749 21 6 8.4084 10.1846 -1.4156 22 7 7.2612 10.1385 -2.0592 23 14 9.8023 11.2444 -2.0661 24 1 10.9801 10.3884 -2.3582 25 1 9.3661 11.9267 -3.3108 26 1 10.1692 12.2601 -1.0468 27 6 7.0849 5.8125 0.2225 28 6 5.4846 1.1054 0.0019 29 8 4.2630 0.5428 0.0016 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8935 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.9880 4.3376 0.2898 36 1 4.3798 5.7581 -0.7132 37 1 4.5883 5.5356 2.3256 38 1 3.4625 6.5595 1.4006 39 1 8.1245 9.6239 2.6708 40 1 7.5813 8.1918 3.5774 41 1 6.4160 9.1275 2.6105 42 1 6.7149 8.6353 -0.2506 43 1 7.1397 10.6546 -2.8715 44 1 7.0763 6.4219 -0.6811 45 1 8.0602 5.3399 0.3381 46 1 6.4309 0.5849 0.0032 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330406987.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:07 Heat of formation + Delta-G solvation = -51.398325 kcal Electronic energy + Delta-G solvation = -30176.838362 eV Core-core repulsion = 25877.699777 eV Total energy + Delta-G solvation = -4299.138584 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.81747 -40.09807 -39.37367 -38.20587 -35.65074 -35.13505 -34.28494 -32.48350 -32.18677 -30.14848 -29.83046 -28.29961 -27.68685 -24.91674 -24.12260 -23.77015 -23.39839 -22.67201 -21.78788 -20.21303 -19.58453 -18.50986 -17.96614 -17.48682 -17.12425 -16.81339 -16.16350 -16.07797 -15.56638 -15.44245 -15.23497 -14.68046 -14.55422 -14.20575 -13.90997 -13.65109 -13.46783 -13.31540 -13.28717 -13.11663 -12.84813 -12.45884 -12.32527 -12.07426 -11.88058 -11.80919 -11.29723 -11.23190 -11.04801 -10.76963 -10.72150 -10.54257 -10.34788 -10.30562 -10.06531 -9.79367 -9.49263 -9.48418 -9.04566 -8.84137 -8.23901 -6.84802 -5.66218 -2.94576 0.83660 1.49061 1.72997 2.32625 2.95408 3.19830 3.50707 3.54982 3.55834 4.01477 4.20804 4.22005 4.23316 4.54388 4.55804 4.67122 4.68229 5.05854 5.08427 5.12692 5.14132 5.26727 5.34378 5.42895 5.44663 5.51024 5.54196 5.66834 5.87139 5.90193 5.97131 6.08813 6.12712 6.30056 6.41666 6.49384 6.53606 6.73103 6.75316 6.85942 7.13630 7.21953 7.48736 7.63518 7.78778 8.11636 8.51969 9.63966 10.21932 10.59340 11.55947 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018721 B = 0.002475 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.324264 B =11309.473145 C =11443.124651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.051 3.949 3 O -0.245 6.245 4 C 0.385 3.615 5 N -0.453 5.453 6 C -0.037 4.037 7 C 0.597 3.403 8 O -0.538 6.538 9 N -0.588 5.588 10 C 0.033 3.967 11 C 0.051 3.949 12 O -0.361 6.361 13 C 0.079 3.921 14 H 0.053 0.947 15 C 0.182 3.818 16 H 0.060 0.940 17 C -0.160 4.160 18 N -0.717 5.717 19 C -0.238 4.238 20 H 0.069 0.931 21 C -0.013 4.013 22 N -0.930 5.930 23 Si 0.905 3.095 24 H -0.287 1.287 25 H -0.292 1.292 26 H -0.287 1.287 27 C 0.084 3.916 28 C 0.002 3.998 29 O -0.225 6.225 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.152 0.848 36 H 0.076 0.924 37 H 0.045 0.955 38 H 0.101 0.899 39 H 0.053 0.947 40 H 0.032 0.968 41 H 0.056 0.944 42 H 0.390 0.610 43 H 0.254 0.746 44 H 0.100 0.900 45 H 0.096 0.904 46 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.330 -24.266 7.163 28.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.024 4.024 3 O -0.153 6.153 4 C 0.140 3.860 5 N -0.200 5.200 6 C -0.155 4.155 7 C 0.384 3.616 8 O -0.416 6.416 9 N -0.319 5.319 10 C -0.090 4.090 11 C -0.027 4.027 12 O -0.279 6.279 13 C 0.020 3.980 14 H 0.071 0.929 15 C 0.071 3.929 16 H 0.077 0.923 17 C -0.220 4.220 18 N -0.359 5.359 19 C -0.369 4.369 20 H 0.087 0.913 21 C -0.209 4.209 22 N -0.578 5.578 23 Si 0.736 3.264 24 H -0.214 1.214 25 H -0.218 1.218 26 H -0.214 1.214 27 C -0.037 4.037 28 C -0.070 4.070 29 O -0.116 6.116 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.106 0.894 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.168 0.832 36 H 0.094 0.906 37 H 0.063 0.937 38 H 0.119 0.881 39 H 0.072 0.928 40 H 0.051 0.949 41 H 0.075 0.925 42 H 0.225 0.775 43 H 0.064 0.936 44 H 0.118 0.882 45 H 0.114 0.886 46 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -13.168 -23.503 7.026 27.842 hybrid contribution 0.708 -0.395 -0.571 0.992 sum -12.460 -23.898 6.455 27.714 Atomic orbital electron populations 1.21819 0.91122 1.03695 1.04341 1.23080 0.96957 0.79280 1.03091 1.86406 1.08935 1.30932 1.89000 1.23678 0.83441 0.81812 0.97019 1.70859 1.04118 1.19931 1.25052 1.21757 0.89957 0.94078 1.09743 1.16724 0.86048 0.81408 0.77453 1.90833 1.18329 1.80897 1.51525 1.48017 1.08746 1.05365 1.69800 1.23595 0.82470 1.03153 0.99755 1.22890 0.93556 0.90062 0.96200 1.88085 1.14249 1.31223 1.94386 1.22884 0.83528 0.96165 0.95422 0.92873 1.20261 0.94636 0.89076 0.88880 0.92273 1.22345 1.02229 1.00373 0.97054 1.42385 1.16017 1.52839 1.24695 1.19198 0.93426 1.19136 1.05179 0.91284 1.24721 0.97011 1.00900 0.98260 1.69668 1.23401 1.45349 1.19419 0.86303 0.81615 0.80395 0.78067 1.21355 1.21838 1.21396 1.22534 0.91111 0.88672 1.01393 1.24937 0.85783 0.92694 1.03598 1.84390 1.16264 1.39069 1.71917 0.90887 0.90851 0.89423 0.90727 0.90757 0.83175 0.90579 0.93708 0.88109 0.92800 0.94913 0.92527 0.77466 0.93585 0.88163 0.88580 0.74668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.48 10.28 37.16 0.38 -0.09 16 2 C 0.05 0.24 6.38 37.16 0.24 0.48 16 3 O -0.24 -2.14 10.19 -41.00 -0.42 -2.56 16 4 C 0.39 4.05 8.98 52.22 0.47 4.52 16 5 N -0.45 -5.77 7.74 -11.71 -0.09 -5.86 16 6 C -0.04 -0.49 6.75 -82.98 -0.56 -1.05 16 7 C 0.60 9.69 7.70 -12.55 -0.10 9.59 16 8 O -0.54 -9.85 16.38 5.25 0.09 -9.77 16 9 N -0.59 -9.84 3.02 -173.57 -0.52 -10.37 16 10 C 0.03 0.49 6.49 -3.54 -0.02 0.47 16 11 C 0.05 0.74 6.98 37.31 0.26 1.00 16 12 O -0.36 -6.68 9.22 -35.23 -0.32 -7.00 16 13 C 0.08 1.44 2.53 -26.57 -0.07 1.37 16 14 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 15 C 0.18 3.76 2.73 -67.93 -0.19 3.57 16 16 H 0.06 1.20 8.08 -51.93 -0.42 0.78 16 17 C -0.16 -3.07 9.35 37.16 0.35 -2.72 16 18 N -0.72 -18.22 4.29 -53.42 -0.23 -18.45 16 19 C -0.24 -6.66 9.93 -15.06 -0.15 -6.81 16 20 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 21 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 22 N -0.93 -28.59 13.06 55.49 0.72 -27.86 16 23 Si 0.90 22.83 29.55 -169.99 -5.02 17.81 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 27 C 0.08 1.58 5.85 -3.53 -0.02 1.56 16 28 C 0.00 0.02 11.94 29.90 0.36 0.37 16 29 O -0.23 -2.07 10.20 -17.75 -0.18 -2.25 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.09 0.11 8.14 -51.93 -0.42 -0.32 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.15 2.09 3.78 -74.50 -0.28 1.81 16 36 H 0.08 1.22 8.14 -51.92 -0.42 0.80 16 37 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.06 1.14 7.68 -51.93 -0.40 0.74 16 42 H 0.39 10.77 7.20 -40.82 -0.29 10.48 16 43 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 44 H 0.10 2.19 7.26 -51.93 -0.38 1.81 16 45 H 0.10 1.81 7.11 -51.93 -0.37 1.44 16 46 H 0.24 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 381.22 15.07 5.74 5.74 Total: -1.00 -34.07 381.22 -6.14 -40.21 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -6.76 Total: 8.55 kcal Atomic # 6 Polarization: 10.95 SS G_CDS: 0.85 Total: 11.80 kcal Atomic # 7 Polarization: -62.42 SS G_CDS: -0.12 Total: -62.54 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.84 Total: -21.58 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.07 -6.14 -40.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330406987.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.191 kcal (2) G-P(sol) polarization free energy of solvation -34.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds