Wall clock time and date at job start Sat Apr 11 2020 05:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42902 * 109.46910 * 2 1 4 4 C 1.35359 * 116.99895 * 179.97438 * 3 2 1 5 5 N 1.30553 * 125.44366 * 180.29707 * 4 3 2 6 6 C 1.36329 * 108.38070 * 180.16192 * 5 4 3 7 7 C 1.47368 * 126.41251 * 179.82472 * 6 5 4 8 8 O 1.21627 * 119.99634 * 186.25214 * 7 6 5 9 9 N 1.34774 * 120.00119 * 6.25259 * 7 6 5 10 10 C 1.47150 * 120.97838 * 356.07472 * 9 7 6 11 11 C 1.53294 * 108.38128 * 129.44877 * 10 9 7 12 12 O 1.42959 * 109.22738 * 52.29724 * 11 10 9 13 13 C 1.42957 * 114.16614 * 297.42048 * 12 11 10 14 14 H 1.08997 * 109.51522 * 302.60116 * 13 12 11 15 15 C 1.53001 * 109.51035 * 182.50150 * 13 12 11 16 16 H 1.09004 * 109.46882 * 180.02562 * 15 13 12 17 17 C 1.53002 * 109.47364 * 60.00518 * 15 13 12 18 18 N 1.46502 * 109.47287 * 300.00046 * 15 13 12 19 19 C 1.36934 * 119.99746 * 205.00101 * 18 15 13 20 20 H 1.07999 * 120.00655 * 359.97438 * 19 18 15 21 21 C 1.38813 * 119.99789 * 180.02562 * 19 18 15 22 22 N 1.31618 * 120.00076 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00265 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47037 * 59.99946 * 23 21 19 25 25 H 1.48497 * 109.47415 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46953 * 300.00119 * 23 21 19 27 27 C 1.47150 * 120.98062 * 176.05730 * 9 7 6 28 28 C 1.35924 * 107.17392 * 359.56459 * 6 5 4 29 29 O 1.34199 * 125.44566 * 359.97422 * 4 3 2 30 30 H 1.09003 * 109.47291 * 300.00087 * 1 2 3 31 31 H 1.09003 * 109.47129 * 60.00181 * 1 2 3 32 32 H 1.08994 * 109.46809 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47948 * 239.99908 * 2 1 3 34 34 H 1.09003 * 109.47129 * 119.99819 * 2 1 3 35 35 H 1.08995 * 109.68804 * 9.72185 * 10 9 7 36 36 H 1.09007 * 109.68058 * 249.16659 * 10 9 7 37 37 H 1.09003 * 109.51484 * 292.37257 * 11 10 9 38 38 H 1.09005 * 109.51516 * 172.22331 * 11 10 9 39 39 H 1.09001 * 109.47151 * 179.97438 * 17 15 13 40 40 H 1.09000 * 109.47026 * 59.99240 * 17 15 13 41 41 H 1.09000 * 109.46353 * 299.99473 * 17 15 13 42 42 H 0.96998 * 119.99881 * 25.00413 * 18 15 13 43 43 H 0.97005 * 120.00464 * 180.02562 * 22 21 19 44 44 H 1.08996 * 109.68148 * 110.83659 * 27 9 7 45 45 H 1.08995 * 109.68643 * 350.27535 * 27 9 7 46 46 H 1.07997 * 126.45541 * 180.29508 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3482 1.5247 0.0005 5 7 3.9594 2.6783 0.0061 6 6 5.3038 2.4526 0.0010 7 6 6.3629 3.4773 0.0009 8 8 7.5277 3.1480 -0.1187 9 7 6.0409 4.7793 0.1334 10 6 4.6350 5.2094 0.1935 11 6 4.4598 6.1198 1.4144 12 8 5.4405 7.1590 1.3713 13 6 6.7902 6.6934 1.4421 14 1 6.9275 6.1120 2.3538 15 6 7.7438 7.8898 1.4506 16 1 8.7727 7.5340 1.5041 17 6 7.4449 8.7717 2.6646 18 7 7.5603 8.6693 0.2237 19 6 8.5824 9.4457 -0.2534 20 1 9.5236 9.4839 0.2749 21 6 8.4084 10.1846 -1.4156 22 7 7.2612 10.1385 -2.0592 23 14 9.8023 11.2444 -2.0661 24 1 10.9801 10.3884 -2.3582 25 1 9.3661 11.9267 -3.3108 26 1 10.1692 12.2601 -1.0468 27 6 7.0849 5.8125 0.2225 28 6 5.4846 1.1054 0.0019 29 8 4.2630 0.5428 0.0016 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8935 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.9880 4.3376 0.2898 36 1 4.3798 5.7581 -0.7132 37 1 4.5883 5.5356 2.3256 38 1 3.4625 6.5595 1.4006 39 1 8.1245 9.6239 2.6708 40 1 7.5813 8.1918 3.5774 41 1 6.4160 9.1275 2.6105 42 1 6.7149 8.6353 -0.2506 43 1 7.1397 10.6546 -2.8715 44 1 7.0763 6.4219 -0.6811 45 1 8.0602 5.3399 0.3381 46 1 6.4309 0.5849 0.0032 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330406987.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:06 Heat of formation + Delta-G solvation = -77.410912 kcal Electronic energy + Delta-G solvation = -30177.966352 eV Core-core repulsion = 25877.699777 eV Total energy + Delta-G solvation = -4300.266575 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.64663 -41.39194 -40.03751 -39.54571 -37.13139 -36.34733 -35.58360 -34.14784 -32.89093 -31.67255 -30.73302 -30.11513 -28.97450 -26.22323 -25.47594 -24.85864 -24.57758 -23.59845 -22.90712 -21.31819 -21.02380 -19.58001 -19.23851 -18.70214 -18.50278 -17.60748 -17.55149 -16.96706 -16.82623 -16.55104 -16.25078 -16.10186 -15.98670 -15.75925 -15.20068 -15.07141 -14.70347 -14.53433 -14.32163 -13.98896 -13.92833 -13.57361 -13.49011 -13.38341 -13.03902 -12.72159 -12.65583 -12.63229 -12.48587 -12.48517 -12.21438 -11.94391 -11.80416 -11.67823 -11.64648 -11.60038 -11.13373 -10.91924 -10.69482 -9.90856 -9.58244 -8.93490 -7.87337 -5.15044 -0.03890 0.77580 0.81330 1.48488 1.51722 1.54128 1.57286 1.80917 2.05525 2.59662 2.81214 3.07837 3.45971 3.65785 3.70287 3.88629 3.94469 3.95344 3.96567 4.00723 4.07028 4.21663 4.24251 4.27529 4.32248 4.47128 4.50663 4.59301 4.67401 4.79863 4.81943 4.87050 4.88756 5.00420 5.05786 5.10835 5.20413 5.24185 5.37956 5.55566 5.62441 5.72825 6.14995 6.27498 6.34665 6.39858 6.86739 7.40433 8.16947 8.42145 9.35862 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018721 B = 0.002475 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.324264 B =11309.473145 C =11443.124651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.041 3.959 3 O -0.254 6.254 4 C 0.394 3.606 5 N -0.480 5.480 6 C -0.074 4.074 7 C 0.597 3.403 8 O -0.566 6.566 9 N -0.594 5.594 10 C 0.037 3.963 11 C 0.050 3.950 12 O -0.385 6.385 13 C 0.092 3.908 14 H 0.079 0.921 15 C 0.173 3.827 16 H 0.064 0.936 17 C -0.148 4.148 18 N -0.727 5.727 19 C -0.234 4.234 20 H 0.077 0.923 21 C -0.078 4.078 22 N -0.969 5.969 23 Si 0.970 3.030 24 H -0.279 1.279 25 H -0.299 1.299 26 H -0.278 1.278 27 C 0.094 3.906 28 C 0.040 3.960 29 O -0.211 6.211 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.111 0.889 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.168 0.832 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.121 0.879 39 H 0.040 0.960 40 H 0.068 0.932 41 H 0.043 0.957 42 H 0.376 0.624 43 H 0.248 0.752 44 H 0.059 0.941 45 H 0.090 0.910 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.728 -26.603 8.653 31.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.033 4.033 3 O -0.163 6.163 4 C 0.148 3.852 5 N -0.227 5.227 6 C -0.191 4.191 7 C 0.386 3.614 8 O -0.446 6.446 9 N -0.325 5.325 10 C -0.085 4.085 11 C -0.027 4.027 12 O -0.304 6.304 13 C 0.032 3.968 14 H 0.097 0.903 15 C 0.064 3.936 16 H 0.082 0.918 17 C -0.208 4.208 18 N -0.368 5.368 19 C -0.366 4.366 20 H 0.095 0.905 21 C -0.270 4.270 22 N -0.620 5.620 23 Si 0.800 3.200 24 H -0.206 1.206 25 H -0.226 1.226 26 H -0.204 1.204 27 C -0.029 4.029 28 C -0.033 4.033 29 O -0.102 6.102 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.129 0.871 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.184 0.816 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.139 0.861 39 H 0.059 0.941 40 H 0.087 0.913 41 H 0.062 0.938 42 H 0.209 0.791 43 H 0.057 0.943 44 H 0.078 0.922 45 H 0.109 0.891 46 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -13.577 -25.871 8.568 30.448 hybrid contribution 0.732 0.138 -0.988 1.238 sum -12.845 -25.733 7.580 29.743 Atomic orbital electron populations 1.21868 0.89899 1.05060 1.03876 1.23465 0.97882 0.77669 1.04286 1.86447 1.07751 1.33415 1.88653 1.23584 0.84151 0.81497 0.95938 1.70557 1.04153 1.21449 1.26552 1.21319 0.89614 0.94432 1.13707 1.17083 0.86523 0.81543 0.76275 1.90801 1.19690 1.81345 1.52786 1.48056 1.08788 1.05432 1.70222 1.23676 0.81890 1.03759 0.99186 1.23115 0.93515 0.89524 0.96590 1.88047 1.14674 1.33092 1.94551 1.22666 0.83311 0.94837 0.95947 0.90346 1.20523 0.95766 0.89734 0.87556 0.91846 1.22167 1.00941 0.99932 0.97737 1.42510 1.14824 1.53163 1.26259 1.19612 0.94085 1.18172 1.04771 0.90469 1.25521 0.99390 1.03032 0.99086 1.69843 1.25514 1.46811 1.19852 0.85255 0.78879 0.78784 0.77103 1.20566 1.22552 1.20449 1.22187 0.91775 0.88929 0.99985 1.25526 0.86729 0.91597 0.99407 1.84447 1.15894 1.38354 1.71482 0.91218 0.91451 0.87087 0.89688 0.89391 0.81567 0.92558 0.91881 0.86068 0.94132 0.91304 0.93804 0.79131 0.94335 0.92223 0.89115 0.71535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 10.28 71.98 0.74 0.13 16 2 C 0.04 0.29 6.38 71.98 0.46 0.75 16 3 O -0.25 -3.99 10.19 -64.28 -0.66 -4.64 16 4 C 0.39 7.51 8.98 130.43 1.17 8.68 16 5 N -0.48 -11.66 7.74 -419.38 -3.24 -14.91 16 6 C -0.07 -1.85 6.75 40.31 0.27 -1.58 16 7 C 0.60 19.31 7.70 86.65 0.67 19.98 16 8 O -0.57 -20.74 16.38 -4.12 -0.07 -20.81 16 9 N -0.59 -20.18 3.02 -821.28 -2.48 -22.66 16 10 C 0.04 1.12 6.49 86.35 0.56 1.68 16 11 C 0.05 1.41 6.98 72.08 0.50 1.91 16 12 O -0.38 -14.17 9.22 -148.98 -1.37 -15.55 16 13 C 0.09 3.30 2.53 30.70 0.08 3.38 16 14 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 15 C 0.17 7.12 2.73 44.99 0.12 7.24 16 16 H 0.06 2.55 8.08 -2.38 -0.02 2.53 16 17 C -0.15 -5.52 9.35 71.98 0.67 -4.85 16 18 N -0.73 -37.87 4.29 -322.93 -1.38 -39.25 16 19 C -0.23 -13.30 9.93 84.03 0.83 -12.47 16 20 H 0.08 4.17 7.83 -2.91 -0.02 4.14 16 21 C -0.08 -4.64 5.50 84.86 0.47 -4.17 16 22 N -0.97 -61.54 13.06 21.65 0.28 -61.25 16 23 Si 0.97 47.75 29.55 68.60 2.03 49.77 16 24 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 25 H -0.30 -14.91 7.11 99.48 0.71 -14.20 16 26 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 27 C 0.09 3.62 5.85 86.36 0.51 4.12 16 28 C 0.04 0.68 11.94 67.28 0.80 1.48 16 29 O -0.21 -3.27 10.20 18.91 0.19 -3.07 16 30 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.11 -0.05 8.14 -2.39 -0.02 -0.07 16 33 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 35 H 0.17 4.58 3.78 -46.95 -0.18 4.40 16 36 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 37 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.12 2.91 8.14 -2.38 -0.02 2.89 16 39 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.04 1.73 7.68 -2.39 -0.02 1.71 16 42 H 0.38 21.62 7.20 -92.71 -0.67 20.95 16 43 H 0.25 15.36 8.31 -92.70 -0.77 14.58 16 44 H 0.06 2.77 7.26 -2.39 -0.02 2.75 16 45 H 0.09 3.52 7.11 -2.39 -0.02 3.51 16 46 H 0.27 2.61 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -75.65 381.22 1.33 -74.32 By element: Atomic # 1 Polarization: 31.58 SS G_CDS: 0.17 Total: 31.75 kcal Atomic # 6 Polarization: 18.44 SS G_CDS: 7.86 Total: 26.30 kcal Atomic # 7 Polarization: -131.25 SS G_CDS: -6.83 Total: -138.07 kcal Atomic # 8 Polarization: -42.17 SS G_CDS: -1.90 Total: -44.07 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 2.03 Total: 49.77 kcal Total: -75.65 1.33 -74.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330406987.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.095 kcal (2) G-P(sol) polarization free energy of solvation -75.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds