Wall clock time and date at job start Sat Apr 11 2020 05:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42897 * 109.47071 * 2 1 4 4 C 1.35351 * 117.00149 * 180.02562 * 3 2 1 5 5 N 1.30554 * 125.44827 * 179.71712 * 4 3 2 6 6 C 1.36330 * 108.38051 * 179.83808 * 5 4 3 7 7 C 1.47378 * 126.40857 * 180.18843 * 6 5 4 8 8 O 1.21618 * 119.99783 * 187.36533 * 7 6 5 9 9 N 1.34776 * 119.99988 * 7.35886 * 7 6 5 10 10 C 1.47155 * 120.98125 * 6.50939 * 9 7 6 11 11 C 1.53706 * 108.16144 * 129.43050 * 10 9 7 12 12 O 1.42964 * 109.15138 * 52.53600 * 11 10 9 13 13 C 1.42972 * 114.16321 * 297.29112 * 12 11 10 14 14 H 1.08997 * 109.55051 * 302.62620 * 13 12 11 15 15 C 1.53000 * 109.50848 * 182.50535 * 13 12 11 16 16 H 1.09009 * 109.46616 * 185.25125 * 15 13 12 17 17 C 1.53002 * 109.47068 * 305.24732 * 15 13 12 18 18 N 1.46494 * 109.47654 * 65.25169 * 15 13 12 19 19 C 1.36939 * 120.00170 * 154.99359 * 18 15 13 20 20 H 1.07994 * 119.99679 * 0.02562 * 19 18 15 21 21 C 1.38812 * 119.99655 * 180.02562 * 19 18 15 22 22 N 1.31614 * 120.00450 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99695 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47379 * 89.99644 * 23 21 19 25 25 H 1.48498 * 109.47288 * 210.00196 * 23 21 19 26 26 H 1.48501 * 109.47079 * 329.99751 * 23 21 19 27 27 C 1.47155 * 120.98034 * 186.78419 * 9 7 6 28 28 C 1.35911 * 107.17622 * 0.41600 * 6 5 4 29 29 O 1.34208 * 125.44456 * 0.02562 * 4 3 2 30 30 H 1.09000 * 109.47430 * 300.00170 * 1 2 3 31 31 H 1.08996 * 109.47378 * 60.00301 * 1 2 3 32 32 H 1.09011 * 109.46975 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.46959 * 239.99722 * 2 1 3 34 34 H 1.09005 * 109.47307 * 119.99492 * 2 1 3 35 35 H 1.08997 * 109.67564 * 249.20525 * 10 9 7 36 36 H 1.09000 * 109.67991 * 9.76141 * 10 9 7 37 37 H 1.09006 * 109.65631 * 292.56909 * 11 10 9 38 38 H 1.08996 * 109.48859 * 172.39863 * 11 10 9 39 39 H 1.09000 * 109.46944 * 180.02562 * 17 15 13 40 40 H 1.09002 * 109.47266 * 300.00741 * 17 15 13 41 41 H 1.08995 * 109.47000 * 60.00433 * 17 15 13 42 42 H 0.97003 * 119.99573 * 335.00214 * 18 15 13 43 43 H 0.97004 * 120.00135 * 179.97438 * 22 21 19 44 44 H 1.08997 * 109.67676 * 350.24022 * 27 9 7 45 45 H 1.08997 * 109.67915 * 110.79175 * 27 9 7 46 46 H 1.08003 * 126.45346 * 179.73097 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3481 1.5246 -0.0005 5 7 3.9594 2.6782 -0.0059 6 6 5.3038 2.4524 -0.0008 7 6 6.3630 3.4772 -0.0003 8 8 7.5268 3.1489 -0.1306 9 7 6.0419 4.7781 0.1445 10 6 4.6611 5.1886 0.4450 11 6 4.6963 6.1426 1.6496 12 8 5.6280 7.1947 1.3876 13 6 6.9778 6.7533 1.2218 14 1 7.2956 6.2097 2.1115 15 6 7.8889 7.9640 1.0100 16 1 8.9010 7.6232 0.7911 17 6 7.3664 8.7966 -0.1625 18 7 7.9017 8.7840 2.2239 19 6 8.9731 9.5936 2.4921 20 1 9.8084 9.6278 1.8085 21 6 8.9853 10.3702 3.6426 22 7 7.9670 10.3288 4.4754 23 14 10.4465 11.4751 4.0081 24 1 10.2182 12.8131 3.4059 25 1 10.6063 11.6144 5.4779 26 1 11.6767 10.8760 3.4311 27 6 7.0606 5.8303 0.0008 28 6 5.4845 1.1053 -0.0016 29 8 4.2630 0.5427 -0.0016 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0278 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8901 35 1 4.2337 5.6985 -0.4184 36 1 4.0618 4.3110 0.6875 37 1 5.0050 5.5964 2.5410 38 1 3.7043 6.5658 1.8074 39 1 8.0158 9.6589 -0.3137 40 1 7.3569 8.1865 -1.0657 41 1 6.3545 9.1374 0.0564 42 1 7.1512 8.7534 2.8377 43 1 7.9757 10.8712 5.2796 44 1 8.0508 5.3778 -0.0508 45 1 6.8706 6.4037 -0.9064 46 1 6.4309 0.5848 -0.0025 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330406989.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:10 Heat of formation + Delta-G solvation = -53.176241 kcal Electronic energy + Delta-G solvation = -29860.641022 eV Core-core repulsion = 25561.425342 eV Total energy + Delta-G solvation = -4299.215680 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.87750 -40.23997 -39.42580 -38.29640 -35.69767 -35.17865 -34.37900 -32.55483 -32.35762 -30.26747 -29.90327 -28.36586 -27.35019 -25.12231 -24.35561 -23.89810 -23.37862 -22.73851 -21.86357 -20.30972 -19.55038 -18.60811 -18.03262 -17.56609 -17.10908 -16.84329 -16.30495 -16.12269 -15.73981 -15.42442 -15.26619 -15.01052 -14.44852 -14.38762 -14.01527 -13.79966 -13.51561 -13.35415 -13.30228 -13.16268 -12.78496 -12.53035 -12.37068 -12.26063 -11.97715 -11.88648 -11.34130 -11.23243 -11.03711 -10.86298 -10.73456 -10.66184 -10.49252 -10.27492 -10.06742 -9.76439 -9.69499 -9.58215 -9.10177 -8.83734 -8.38659 -6.87060 -5.67793 -2.96269 0.75482 1.44574 1.65225 2.26262 2.78332 3.06217 3.49081 3.53943 3.55637 3.93452 4.15492 4.17692 4.19595 4.48077 4.50268 4.60973 4.64484 4.93878 5.03833 5.04968 5.10600 5.17196 5.29219 5.33048 5.37295 5.41246 5.45295 5.64019 5.75858 5.82638 5.91991 5.97909 6.06241 6.11086 6.26846 6.31836 6.49282 6.54396 6.72831 6.89416 7.05780 7.23778 7.30814 7.60667 7.77240 7.95377 8.50421 9.62145 10.20617 10.57330 11.54689 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023625 B = 0.002216 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.883719 B =12632.823167 C =13115.062844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.051 3.949 3 O -0.244 6.244 4 C 0.385 3.615 5 N -0.453 5.453 6 C -0.042 4.042 7 C 0.601 3.399 8 O -0.535 6.535 9 N -0.592 5.592 10 C 0.053 3.947 11 C 0.046 3.954 12 O -0.360 6.360 13 C 0.077 3.923 14 H 0.063 0.937 15 C 0.185 3.815 16 H 0.059 0.941 17 C -0.162 4.162 18 N -0.719 5.719 19 C -0.237 4.237 20 H 0.070 0.930 21 C -0.015 4.015 22 N -0.931 5.931 23 Si 0.906 3.094 24 H -0.291 1.291 25 H -0.292 1.292 26 H -0.282 1.282 27 C 0.081 3.919 28 C 0.005 3.995 29 O -0.225 6.225 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.136 0.864 37 H 0.050 0.950 38 H 0.102 0.898 39 H 0.051 0.949 40 H 0.034 0.966 41 H 0.057 0.943 42 H 0.389 0.611 43 H 0.254 0.746 44 H 0.101 0.899 45 H 0.084 0.916 46 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.104 -24.896 -11.183 31.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.024 4.024 3 O -0.153 6.153 4 C 0.139 3.861 5 N -0.200 5.200 6 C -0.160 4.160 7 C 0.388 3.612 8 O -0.413 6.413 9 N -0.324 5.324 10 C -0.070 4.070 11 C -0.032 4.032 12 O -0.278 6.278 13 C 0.017 3.983 14 H 0.081 0.919 15 C 0.074 3.926 16 H 0.077 0.923 17 C -0.222 4.222 18 N -0.360 5.360 19 C -0.368 4.368 20 H 0.088 0.912 21 C -0.211 4.211 22 N -0.579 5.579 23 Si 0.737 3.263 24 H -0.218 1.218 25 H -0.219 1.219 26 H -0.208 1.208 27 C -0.041 4.041 28 C -0.068 4.068 29 O -0.116 6.116 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.106 0.894 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.153 0.847 37 H 0.068 0.932 38 H 0.120 0.880 39 H 0.071 0.929 40 H 0.053 0.947 41 H 0.076 0.924 42 H 0.223 0.777 43 H 0.064 0.936 44 H 0.119 0.881 45 H 0.102 0.898 46 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -14.931 -24.131 -11.246 30.524 hybrid contribution 0.740 -0.432 0.452 0.968 sum -14.191 -24.563 -10.795 30.352 Atomic orbital electron populations 1.21820 0.91097 1.03728 1.04336 1.23083 0.96973 0.79237 1.03103 1.86401 1.08894 1.30964 1.89002 1.23596 0.83484 0.81738 0.97240 1.71124 1.03963 1.20343 1.24564 1.21677 0.90089 0.93983 1.10241 1.16717 0.86037 0.81346 0.77120 1.90835 1.18251 1.80750 1.51441 1.47960 1.11032 1.04995 1.68396 1.23333 0.82363 1.02166 0.99106 1.23024 0.94700 0.89720 0.95707 1.88086 1.16589 1.31361 1.91764 1.22941 0.83512 0.96126 0.95672 0.91869 1.20199 0.94609 0.88670 0.89119 0.92296 1.22411 1.02137 1.00372 0.97297 1.42356 1.22303 1.49297 1.22090 1.19255 0.96775 1.16709 1.04101 0.91161 1.24740 0.97981 1.00752 0.97580 1.69681 1.30656 1.44077 1.13518 0.86203 0.82142 0.80822 0.77104 1.21804 1.21889 1.20796 1.22588 0.92971 0.88470 1.00050 1.24961 0.85850 0.92725 1.03216 1.84399 1.16247 1.39143 1.71859 0.90841 0.90898 0.89393 0.90759 0.90702 0.90710 0.84726 0.93179 0.87957 0.92942 0.94674 0.92395 0.77665 0.93618 0.88080 0.89814 0.74666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.42 10.28 37.16 0.38 -0.03 16 2 C 0.05 0.22 6.38 37.16 0.24 0.46 16 3 O -0.24 -2.01 10.19 -40.98 -0.42 -2.42 16 4 C 0.38 3.78 8.98 52.22 0.47 4.25 16 5 N -0.45 -5.35 7.91 -11.71 -0.09 -5.44 16 6 C -0.04 -0.50 6.66 -82.98 -0.55 -1.05 16 7 C 0.60 8.79 7.69 -12.54 -0.10 8.70 16 8 O -0.54 -8.92 16.37 5.26 0.09 -8.83 16 9 N -0.59 -8.70 3.01 -173.31 -0.52 -9.22 16 10 C 0.05 0.70 6.27 -3.32 -0.02 0.68 16 11 C 0.05 0.67 7.00 37.52 0.26 0.93 16 12 O -0.36 -6.56 9.24 -35.23 -0.33 -6.89 16 13 C 0.08 1.40 2.61 -26.58 -0.07 1.33 16 14 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 15 C 0.18 3.83 2.77 -67.93 -0.19 3.64 16 16 H 0.06 1.21 8.08 -51.92 -0.42 0.79 16 17 C -0.16 -3.09 9.06 37.16 0.34 -2.76 16 18 N -0.72 -18.72 5.10 -53.43 -0.27 -18.99 16 19 C -0.24 -6.74 9.93 -15.06 -0.15 -6.88 16 20 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 21 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 22 N -0.93 -28.86 13.06 55.49 0.72 -28.13 16 23 Si 0.91 22.87 29.55 -169.99 -5.02 17.85 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 25 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 26 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 27 C 0.08 1.27 5.84 -3.54 -0.02 1.25 16 28 C 0.00 0.04 11.94 29.90 0.36 0.40 16 29 O -0.23 -1.93 10.20 -17.77 -0.18 -2.11 16 30 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.09 0.08 8.14 -51.92 -0.42 -0.35 16 33 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.14 1.70 4.32 -54.19 -0.23 1.47 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.03 0.56 6.42 -51.93 -0.33 0.22 16 41 H 0.06 1.17 7.55 -51.93 -0.39 0.78 16 42 H 0.39 10.96 7.59 -40.82 -0.31 10.65 16 43 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 44 H 0.10 1.60 7.06 -51.93 -0.37 1.23 16 45 H 0.08 1.24 6.27 -51.93 -0.33 0.91 16 46 H 0.24 1.39 8.06 -52.48 -0.42 0.97 16 LS Contribution 379.78 15.07 5.72 5.72 Total: -1.00 -34.67 379.78 -6.03 -40.70 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -6.58 Total: 7.39 kcal Atomic # 6 Polarization: 9.52 SS G_CDS: 0.85 Total: 10.37 kcal Atomic # 7 Polarization: -61.62 SS G_CDS: -0.16 Total: -61.79 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -0.84 Total: -20.25 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.85 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.67 -6.03 -40.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330406989.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.476 kcal (2) G-P(sol) polarization free energy of solvation -34.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds