Wall clock time and date at job start Sat Apr 11 2020 05:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42898 * 109.47139 * 2 1 4 4 C 1.35349 * 116.99838 * 180.02562 * 3 2 1 5 5 N 1.30549 * 125.44357 * 180.02562 * 4 3 2 6 6 C 1.36334 * 108.38347 * 180.02562 * 5 4 3 7 7 C 1.47365 * 126.41586 * 179.97438 * 6 5 4 8 8 O 1.21618 * 119.99938 * 173.24367 * 7 6 5 9 9 N 1.34777 * 119.99838 * 353.24724 * 7 6 5 10 10 C 1.47149 * 120.98135 * 353.22390 * 9 7 6 11 11 C 1.53297 * 108.38353 * 230.55433 * 10 9 7 12 12 O 1.42967 * 109.22248 * 307.69989 * 11 10 9 13 13 C 1.42961 * 114.16784 * 62.58043 * 12 11 10 14 14 H 1.09001 * 109.55633 * 57.36554 * 13 12 11 15 15 C 1.52991 * 109.51496 * 177.49552 * 13 12 11 16 16 H 1.09002 * 109.47567 * 184.74887 * 15 13 12 17 17 C 1.53002 * 109.46924 * 304.74695 * 15 13 12 18 18 N 1.46508 * 109.47272 * 64.74175 * 15 13 12 19 19 C 1.36938 * 119.99656 * 155.00066 * 18 15 13 20 20 H 1.07999 * 120.00606 * 0.02562 * 19 18 15 21 21 C 1.38814 * 119.99615 * 180.27750 * 19 18 15 22 22 N 1.31623 * 119.99660 * 359.73020 * 21 19 18 23 23 Si 1.86794 * 119.99971 * 179.72327 * 21 19 18 24 24 H 1.48498 * 109.47245 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46937 * 120.00119 * 23 21 19 26 26 H 1.48498 * 109.47466 * 239.99974 * 23 21 19 27 27 C 1.47153 * 120.98070 * 173.24122 * 9 7 6 28 28 C 1.35917 * 107.17210 * 0.26592 * 6 5 4 29 29 O 1.34201 * 125.44947 * 0.02879 * 4 3 2 30 30 H 1.08995 * 109.47421 * 59.99465 * 1 2 3 31 31 H 1.09000 * 109.47252 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47032 * 299.99548 * 1 2 3 33 33 H 1.08997 * 109.46673 * 240.00229 * 2 1 3 34 34 H 1.08997 * 109.46910 * 120.00477 * 2 1 3 35 35 H 1.08996 * 109.68375 * 350.27891 * 10 9 7 36 36 H 1.09003 * 109.67982 * 110.83461 * 10 9 7 37 37 H 1.09003 * 109.50976 * 67.62026 * 11 10 9 38 38 H 1.08992 * 109.51458 * 187.77563 * 11 10 9 39 39 H 1.09007 * 109.46958 * 180.02562 * 17 15 13 40 40 H 1.08996 * 109.47054 * 299.99650 * 17 15 13 41 41 H 1.09001 * 109.47553 * 59.99969 * 17 15 13 42 42 H 0.96993 * 119.99644 * 335.00418 * 18 15 13 43 43 H 0.97004 * 119.99543 * 180.02562 * 22 21 19 44 44 H 1.09009 * 109.68190 * 9.72472 * 27 9 7 45 45 H 1.08994 * 109.71391 * 249.18805 * 27 9 7 46 46 H 1.08002 * 126.45723 * 179.73587 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3482 1.5246 -0.0005 5 7 3.9594 2.6781 -0.0001 6 6 5.3039 2.4523 -0.0015 7 6 6.3631 3.4770 -0.0021 8 8 7.5275 3.1480 0.1205 9 7 6.0413 4.7786 -0.1386 10 6 4.6602 5.1904 -0.4358 11 6 4.6884 6.1502 -1.6307 12 8 5.6217 7.2009 -1.3686 13 6 6.9721 6.7586 -1.2117 14 1 7.2854 6.2189 -2.1054 15 6 7.8846 7.9681 -0.9990 16 1 8.9229 7.6382 -0.9637 17 6 7.7018 8.9543 -2.1543 18 7 7.5378 8.6254 0.2636 19 6 8.4747 9.3726 0.9263 20 1 9.4690 9.4777 0.5182 21 6 8.1478 9.9907 2.1255 22 7 6.9358 9.8629 2.6228 23 14 9.4280 11.0035 3.0336 24 1 10.7017 10.9909 2.2702 25 1 8.9470 12.4019 3.1700 26 1 9.6527 10.4236 4.3820 27 6 7.0609 5.8300 0.0048 28 6 5.4846 1.1052 -0.0088 29 8 4.2631 0.5427 -0.0016 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 4.0610 4.3141 -0.6828 36 1 4.2332 5.6954 0.4307 37 1 4.9925 5.6080 -2.5261 38 1 3.6955 6.5742 -1.7806 39 1 8.3523 9.8158 -2.0030 40 1 7.9598 8.4653 -3.0937 41 1 6.6635 9.2843 -2.1897 42 1 6.6447 8.5313 0.6300 43 1 6.7073 10.2951 3.4606 44 1 8.0515 5.3771 0.0494 45 1 6.8762 6.3994 0.9156 46 1 6.4309 0.5847 -0.0157 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330406992.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:12 Heat of formation + Delta-G solvation = -52.942976 kcal Electronic energy + Delta-G solvation = -30169.536334 eV Core-core repulsion = 25870.330769 eV Total energy + Delta-G solvation = -4299.205565 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.78434 -40.10231 -39.35047 -38.21366 -35.61870 -35.13756 -34.30378 -32.46371 -32.18945 -30.15267 -29.80890 -28.30259 -27.71199 -24.89679 -24.10716 -23.72810 -23.42051 -22.64479 -21.81565 -20.19097 -19.56481 -18.49773 -17.94906 -17.48430 -17.14282 -16.77021 -16.17654 -16.05736 -15.57270 -15.44114 -15.26194 -14.65623 -14.54694 -14.18138 -13.93804 -13.64446 -13.44926 -13.29989 -13.28021 -13.10524 -12.85875 -12.42854 -12.30980 -12.05100 -11.82482 -11.77999 -11.27889 -11.21103 -11.06637 -10.80436 -10.73454 -10.60247 -10.36517 -10.29288 -10.04976 -9.79165 -9.57759 -9.50591 -9.01513 -8.86178 -8.24172 -6.86024 -5.67855 -2.96150 0.85362 1.52553 1.75992 2.35138 2.96078 3.19852 3.49074 3.54747 3.56846 4.03713 4.19067 4.23519 4.25045 4.56078 4.57787 4.66120 4.70130 5.05173 5.10383 5.14942 5.15703 5.27179 5.34758 5.43496 5.45848 5.48657 5.54046 5.65366 5.84892 5.88698 5.95120 6.08306 6.14512 6.30214 6.39351 6.48579 6.50367 6.68444 6.75452 6.86540 7.16857 7.22679 7.48188 7.61456 7.78739 8.11640 8.50254 9.62405 10.19792 10.56863 11.54456 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017030 B = 0.002515 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.793473 B =11131.869256 C =11261.210576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.051 3.949 3 O -0.244 6.244 4 C 0.383 3.617 5 N -0.452 5.452 6 C -0.039 4.039 7 C 0.599 3.401 8 O -0.537 6.537 9 N -0.590 5.590 10 C 0.051 3.949 11 C 0.049 3.951 12 O -0.361 6.361 13 C 0.079 3.921 14 H 0.054 0.946 15 C 0.182 3.818 16 H 0.060 0.940 17 C -0.159 4.159 18 N -0.718 5.718 19 C -0.237 4.237 20 H 0.071 0.929 21 C -0.014 4.014 22 N -0.930 5.930 23 Si 0.904 3.096 24 H -0.281 1.281 25 H -0.293 1.293 26 H -0.293 1.293 27 C 0.084 3.916 28 C 0.001 3.999 29 O -0.226 6.226 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.135 0.865 36 H 0.078 0.922 37 H 0.045 0.955 38 H 0.102 0.898 39 H 0.052 0.948 40 H 0.032 0.968 41 H 0.056 0.944 42 H 0.389 0.611 43 H 0.253 0.747 44 H 0.097 0.903 45 H 0.102 0.898 46 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.089 -23.319 -9.219 27.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.024 4.024 3 O -0.153 6.153 4 C 0.138 3.862 5 N -0.198 5.198 6 C -0.157 4.157 7 C 0.385 3.615 8 O -0.415 6.415 9 N -0.322 5.322 10 C -0.072 4.072 11 C -0.029 4.029 12 O -0.280 6.280 13 C 0.020 3.980 14 H 0.072 0.928 15 C 0.071 3.929 16 H 0.078 0.922 17 C -0.219 4.219 18 N -0.360 5.360 19 C -0.368 4.368 20 H 0.089 0.911 21 C -0.210 4.210 22 N -0.578 5.578 23 Si 0.736 3.264 24 H -0.206 1.206 25 H -0.220 1.220 26 H -0.220 1.220 27 C -0.037 4.037 28 C -0.071 4.071 29 O -0.117 6.117 30 H 0.091 0.909 31 H 0.106 0.894 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.152 0.848 36 H 0.097 0.903 37 H 0.063 0.937 38 H 0.120 0.880 39 H 0.071 0.929 40 H 0.051 0.949 41 H 0.076 0.924 42 H 0.224 0.776 43 H 0.063 0.937 44 H 0.115 0.885 45 H 0.120 0.880 46 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -11.929 -22.557 -9.059 27.078 hybrid contribution 0.588 -0.498 0.712 1.049 sum -11.341 -23.056 -8.347 27.016 Atomic orbital electron populations 1.21818 0.91144 1.03674 1.04334 1.23070 0.96938 0.79322 1.03058 1.86401 1.08941 1.30866 1.89055 1.23605 0.83458 0.81770 0.97383 1.71144 1.04030 1.20280 1.24383 1.21743 0.90082 0.94025 1.09857 1.16710 0.86015 0.81407 0.77342 1.90826 1.18240 1.80792 1.51681 1.48013 1.11006 1.05051 1.68083 1.23220 0.82671 1.01913 0.99359 1.22931 0.94579 0.89727 0.95692 1.88090 1.16551 1.31402 1.91909 1.22883 0.83492 0.96186 0.95489 0.92780 1.20266 0.94743 0.89491 0.88351 0.92232 1.22320 1.02180 1.00323 0.97078 1.42428 1.13898 1.58849 1.20858 1.19288 0.93112 1.22686 1.01695 0.91142 1.24727 0.96607 1.01373 0.98254 1.69690 1.18375 1.48464 1.21281 0.86153 0.80690 0.79853 0.79711 1.20614 1.22028 1.22012 1.22548 0.92311 0.87809 1.01027 1.24943 0.85795 0.92751 1.03597 1.84386 1.16259 1.39157 1.71933 0.90895 0.89440 0.90861 0.90786 0.90758 0.84849 0.90344 0.93679 0.88036 0.92861 0.94908 0.92445 0.77564 0.93680 0.88457 0.88009 0.74715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.51 10.28 37.16 0.38 -0.13 16 2 C 0.05 0.26 6.38 37.16 0.24 0.50 16 3 O -0.24 -2.22 10.19 -40.97 -0.42 -2.64 16 4 C 0.38 4.15 8.98 52.22 0.47 4.62 16 5 N -0.45 -5.90 7.90 -11.72 -0.09 -6.00 16 6 C -0.04 -0.52 6.66 -82.98 -0.55 -1.07 16 7 C 0.60 9.76 7.69 -12.55 -0.10 9.66 16 8 O -0.54 -9.86 16.37 5.26 0.09 -9.77 16 9 N -0.59 -9.86 3.02 -173.56 -0.52 -10.38 16 10 C 0.05 0.76 6.24 -3.53 -0.02 0.74 16 11 C 0.05 0.70 6.99 37.31 0.26 0.96 16 12 O -0.36 -6.57 9.24 -35.23 -0.33 -6.89 16 13 C 0.08 1.42 2.57 -26.58 -0.07 1.36 16 14 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 15 C 0.18 3.73 2.80 -67.93 -0.19 3.54 16 16 H 0.06 1.21 8.08 -51.93 -0.42 0.79 16 17 C -0.16 -3.04 9.30 37.16 0.35 -2.70 16 18 N -0.72 -18.12 4.24 -53.42 -0.23 -18.34 16 19 C -0.24 -6.58 9.93 -15.06 -0.15 -6.73 16 20 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 21 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 22 N -0.93 -28.45 13.06 55.49 0.72 -27.73 16 23 Si 0.90 22.77 29.55 -169.99 -5.02 17.75 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 26 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 27 C 0.08 1.58 5.84 -3.53 -0.02 1.56 16 28 C 0.00 0.01 11.94 29.90 0.36 0.37 16 29 O -0.23 -2.14 10.20 -17.75 -0.18 -2.32 16 30 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 32 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.13 1.84 4.31 -54.36 -0.23 1.60 16 36 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.05 1.07 8.14 -51.92 -0.42 0.64 16 40 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 1.15 7.57 -51.93 -0.39 0.76 16 42 H 0.39 10.65 7.08 -40.82 -0.29 10.36 16 43 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 44 H 0.10 1.85 7.06 -51.92 -0.37 1.49 16 45 H 0.10 2.22 6.94 -51.93 -0.36 1.86 16 46 H 0.24 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 380.99 15.07 5.74 5.74 Total: -1.00 -33.92 380.99 -6.07 -39.98 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -6.68 Total: 8.41 kcal Atomic # 6 Polarization: 11.33 SS G_CDS: 0.85 Total: 12.18 kcal Atomic # 7 Polarization: -62.33 SS G_CDS: -0.12 Total: -62.45 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.84 Total: -21.62 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.92 -6.07 -39.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330406992.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.962 kcal (2) G-P(sol) polarization free energy of solvation -33.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds