Wall clock time and date at job start Sat Apr 11 2020 05:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42898 * 109.47139 * 2 1 4 4 C 1.35349 * 116.99838 * 180.02562 * 3 2 1 5 5 N 1.30549 * 125.44357 * 180.02562 * 4 3 2 6 6 C 1.36334 * 108.38347 * 180.02562 * 5 4 3 7 7 C 1.47365 * 126.41586 * 179.97438 * 6 5 4 8 8 O 1.21618 * 119.99938 * 173.24367 * 7 6 5 9 9 N 1.34777 * 119.99838 * 353.24724 * 7 6 5 10 10 C 1.47149 * 120.98135 * 353.22390 * 9 7 6 11 11 C 1.53297 * 108.38353 * 230.55433 * 10 9 7 12 12 O 1.42967 * 109.22248 * 307.69989 * 11 10 9 13 13 C 1.42961 * 114.16784 * 62.58043 * 12 11 10 14 14 H 1.09001 * 109.55633 * 57.36554 * 13 12 11 15 15 C 1.52991 * 109.51496 * 177.49552 * 13 12 11 16 16 H 1.09002 * 109.47567 * 184.74887 * 15 13 12 17 17 C 1.53002 * 109.46924 * 304.74695 * 15 13 12 18 18 N 1.46508 * 109.47272 * 64.74175 * 15 13 12 19 19 C 1.36938 * 119.99656 * 155.00066 * 18 15 13 20 20 H 1.07999 * 120.00606 * 0.02562 * 19 18 15 21 21 C 1.38814 * 119.99615 * 180.27750 * 19 18 15 22 22 N 1.31623 * 119.99660 * 359.73020 * 21 19 18 23 23 Si 1.86794 * 119.99971 * 179.72327 * 21 19 18 24 24 H 1.48498 * 109.47245 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46937 * 120.00119 * 23 21 19 26 26 H 1.48498 * 109.47466 * 239.99974 * 23 21 19 27 27 C 1.47153 * 120.98070 * 173.24122 * 9 7 6 28 28 C 1.35917 * 107.17210 * 0.26592 * 6 5 4 29 29 O 1.34201 * 125.44947 * 0.02879 * 4 3 2 30 30 H 1.08995 * 109.47421 * 59.99465 * 1 2 3 31 31 H 1.09000 * 109.47252 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47032 * 299.99548 * 1 2 3 33 33 H 1.08997 * 109.46673 * 240.00229 * 2 1 3 34 34 H 1.08997 * 109.46910 * 120.00477 * 2 1 3 35 35 H 1.08996 * 109.68375 * 350.27891 * 10 9 7 36 36 H 1.09003 * 109.67982 * 110.83461 * 10 9 7 37 37 H 1.09003 * 109.50976 * 67.62026 * 11 10 9 38 38 H 1.08992 * 109.51458 * 187.77563 * 11 10 9 39 39 H 1.09007 * 109.46958 * 180.02562 * 17 15 13 40 40 H 1.08996 * 109.47054 * 299.99650 * 17 15 13 41 41 H 1.09001 * 109.47553 * 59.99969 * 17 15 13 42 42 H 0.96993 * 119.99644 * 335.00418 * 18 15 13 43 43 H 0.97004 * 119.99543 * 180.02562 * 22 21 19 44 44 H 1.09009 * 109.68190 * 9.72472 * 27 9 7 45 45 H 1.08994 * 109.71391 * 249.18805 * 27 9 7 46 46 H 1.08002 * 126.45723 * 179.73587 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3482 1.5246 -0.0005 5 7 3.9594 2.6781 -0.0001 6 6 5.3039 2.4523 -0.0015 7 6 6.3631 3.4770 -0.0021 8 8 7.5275 3.1480 0.1205 9 7 6.0413 4.7786 -0.1386 10 6 4.6602 5.1904 -0.4358 11 6 4.6884 6.1502 -1.6307 12 8 5.6217 7.2009 -1.3686 13 6 6.9721 6.7586 -1.2117 14 1 7.2854 6.2189 -2.1054 15 6 7.8846 7.9681 -0.9990 16 1 8.9229 7.6382 -0.9637 17 6 7.7018 8.9543 -2.1543 18 7 7.5378 8.6254 0.2636 19 6 8.4747 9.3726 0.9263 20 1 9.4690 9.4777 0.5182 21 6 8.1478 9.9907 2.1255 22 7 6.9358 9.8629 2.6228 23 14 9.4280 11.0035 3.0336 24 1 10.7017 10.9909 2.2702 25 1 8.9470 12.4019 3.1700 26 1 9.6527 10.4236 4.3820 27 6 7.0609 5.8300 0.0048 28 6 5.4846 1.1052 -0.0088 29 8 4.2631 0.5427 -0.0016 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 4.0610 4.3141 -0.6828 36 1 4.2332 5.6954 0.4307 37 1 4.9925 5.6080 -2.5261 38 1 3.6955 6.5742 -1.7806 39 1 8.3523 9.8158 -2.0030 40 1 7.9598 8.4653 -3.0937 41 1 6.6635 9.2843 -2.1897 42 1 6.6447 8.5313 0.6300 43 1 6.7073 10.2951 3.4606 44 1 8.0515 5.3771 0.0494 45 1 6.8762 6.3994 0.9156 46 1 6.4309 0.5847 -0.0157 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330406992.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:12 Heat of formation + Delta-G solvation = -78.794243 kcal Electronic energy + Delta-G solvation = -30170.657330 eV Core-core repulsion = 25870.330769 eV Total energy + Delta-G solvation = -4300.326560 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.63262 -41.39745 -40.03610 -39.54653 -37.13306 -36.32700 -35.59265 -34.14270 -32.89189 -31.66888 -30.72687 -30.11207 -28.99476 -26.20957 -25.46884 -24.84937 -24.57535 -23.58785 -22.92981 -21.30360 -20.99758 -19.58420 -19.24399 -18.71994 -18.48734 -17.59729 -17.53040 -16.98009 -16.87089 -16.55376 -16.23404 -16.07833 -15.98945 -15.74132 -15.22865 -15.05247 -14.70783 -14.52196 -14.32577 -13.98530 -13.92876 -13.57128 -13.48108 -13.32113 -13.02628 -12.78886 -12.66399 -12.61121 -12.48771 -12.45525 -12.11099 -11.93004 -11.80699 -11.67901 -11.66968 -11.61123 -11.14698 -10.93942 -10.82428 -9.89566 -9.58038 -8.93748 -7.88093 -5.15640 -0.03992 0.79024 0.82112 1.48793 1.49292 1.54668 1.59192 1.81035 2.05230 2.59335 2.81143 3.08166 3.45997 3.65438 3.70062 3.90467 3.93883 3.95256 3.97054 4.00862 4.06558 4.21238 4.25362 4.27301 4.33072 4.47537 4.50327 4.59824 4.67132 4.79446 4.82503 4.87136 4.88135 4.98381 5.04572 5.12175 5.20084 5.24547 5.34955 5.56363 5.63848 5.66818 6.14956 6.27166 6.33819 6.40210 6.86384 7.39962 8.15728 8.40815 9.35455 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017030 B = 0.002515 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.793473 B =11131.869256 C =11261.210576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.041 3.959 3 O -0.255 6.255 4 C 0.391 3.609 5 N -0.480 5.480 6 C -0.076 4.076 7 C 0.598 3.402 8 O -0.565 6.565 9 N -0.596 5.596 10 C 0.056 3.944 11 C 0.047 3.953 12 O -0.384 6.384 13 C 0.091 3.909 14 H 0.079 0.921 15 C 0.173 3.827 16 H 0.064 0.936 17 C -0.147 4.147 18 N -0.727 5.727 19 C -0.231 4.231 20 H 0.078 0.922 21 C -0.079 4.079 22 N -0.969 5.969 23 Si 0.969 3.031 24 H -0.265 1.265 25 H -0.296 1.296 26 H -0.297 1.297 27 C 0.094 3.906 28 C 0.039 3.961 29 O -0.212 6.212 30 H 0.069 0.931 31 H 0.111 0.889 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.150 0.850 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.124 0.876 39 H 0.039 0.961 40 H 0.067 0.933 41 H 0.044 0.956 42 H 0.376 0.624 43 H 0.248 0.752 44 H 0.089 0.911 45 H 0.062 0.938 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.274 -25.493 -10.807 30.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.033 4.033 3 O -0.163 6.163 4 C 0.145 3.855 5 N -0.227 5.227 6 C -0.193 4.193 7 C 0.387 3.613 8 O -0.445 6.445 9 N -0.327 5.327 10 C -0.066 4.066 11 C -0.030 4.030 12 O -0.302 6.302 13 C 0.032 3.968 14 H 0.097 0.903 15 C 0.064 3.936 16 H 0.082 0.918 17 C -0.207 4.207 18 N -0.368 5.368 19 C -0.363 4.363 20 H 0.096 0.904 21 C -0.271 4.271 22 N -0.620 5.620 23 Si 0.799 3.201 24 H -0.189 1.189 25 H -0.224 1.224 26 H -0.225 1.225 27 C -0.028 4.028 28 C -0.034 4.034 29 O -0.103 6.103 30 H 0.088 0.912 31 H 0.129 0.871 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.167 0.833 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.142 0.858 39 H 0.058 0.942 40 H 0.086 0.914 41 H 0.063 0.937 42 H 0.208 0.792 43 H 0.056 0.944 44 H 0.108 0.892 45 H 0.080 0.920 46 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -12.118 -24.757 -10.699 29.567 hybrid contribution 0.551 -0.005 1.149 1.274 sum -11.567 -24.762 -9.550 28.951 Atomic orbital electron populations 1.21868 0.89893 1.05062 1.03859 1.23456 0.97886 0.77695 1.04247 1.86441 1.07786 1.33383 1.88721 1.23543 0.84171 0.81483 0.96324 1.70917 1.04136 1.21788 1.25883 1.21341 0.89735 0.94434 1.13752 1.17063 0.86463 0.81567 0.76224 1.90794 1.19548 1.81247 1.52913 1.48051 1.11130 1.05040 1.68466 1.23276 0.81866 1.02564 0.98890 1.23169 0.94849 0.89058 0.95897 1.88054 1.16841 1.33237 1.92092 1.22653 0.83547 0.94724 0.95856 0.90329 1.20523 0.95649 0.90507 0.86890 0.91819 1.22143 1.01060 0.99534 0.97931 1.42554 1.12811 1.58968 1.22472 1.19678 0.93674 1.21487 1.01479 0.90408 1.25513 0.98508 1.03462 0.99581 1.69856 1.20375 1.50163 1.21619 0.85123 0.78984 0.77807 0.78179 1.18910 1.22395 1.22501 1.22187 0.92583 0.88249 0.99803 1.25539 0.86729 0.91669 0.99449 1.84441 1.15908 1.38460 1.71491 0.91175 0.87058 0.91532 0.89350 0.89797 0.83297 0.92323 0.91765 0.85815 0.94177 0.91388 0.93711 0.79182 0.94359 0.89237 0.92002 0.71544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 10.28 71.98 0.74 0.04 16 2 C 0.04 0.32 6.38 71.98 0.46 0.78 16 3 O -0.25 -4.22 10.19 -64.18 -0.65 -4.87 16 4 C 0.39 7.79 8.98 130.43 1.17 8.96 16 5 N -0.48 -12.10 7.90 -419.40 -3.31 -15.41 16 6 C -0.08 -1.93 6.66 40.31 0.27 -1.67 16 7 C 0.60 19.45 7.69 86.65 0.67 20.12 16 8 O -0.56 -20.71 16.37 -4.09 -0.07 -20.78 16 9 N -0.60 -20.18 3.02 -821.27 -2.48 -22.66 16 10 C 0.06 1.67 6.24 86.36 0.54 2.21 16 11 C 0.05 1.30 6.99 72.08 0.50 1.80 16 12 O -0.38 -13.80 9.24 -148.98 -1.38 -15.18 16 13 C 0.09 3.27 2.57 30.69 0.08 3.35 16 14 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 15 C 0.17 7.07 2.80 44.99 0.13 7.20 16 16 H 0.06 2.55 8.08 -2.39 -0.02 2.53 16 17 C -0.15 -5.46 9.30 71.98 0.67 -4.79 16 18 N -0.73 -37.57 4.24 -322.93 -1.37 -38.94 16 19 C -0.23 -13.04 9.93 84.03 0.83 -12.20 16 20 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 21 C -0.08 -4.64 5.50 84.86 0.47 -4.17 16 22 N -0.97 -61.25 13.06 21.65 0.28 -60.96 16 23 Si 0.97 47.64 29.55 68.60 2.03 49.66 16 24 H -0.26 -12.15 7.11 99.48 0.71 -11.45 16 25 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 26 H -0.30 -14.71 7.11 99.48 0.71 -14.01 16 27 C 0.09 3.64 5.84 86.36 0.50 4.15 16 28 C 0.04 0.68 11.94 67.28 0.80 1.48 16 29 O -0.21 -3.44 10.20 18.91 0.19 -3.25 16 30 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.11 0.01 8.14 -2.39 -0.02 -0.01 16 32 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.15 4.04 4.31 -7.19 -0.03 4.01 16 36 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16 39 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 40 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.04 1.76 7.57 -2.39 -0.02 1.74 16 42 H 0.38 21.39 7.08 -92.71 -0.66 20.74 16 43 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 44 H 0.09 3.52 7.06 -2.38 -0.02 3.51 16 45 H 0.06 2.87 6.94 -2.39 -0.02 2.86 16 46 H 0.27 2.73 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -75.26 380.99 1.40 -73.85 By element: Atomic # 1 Polarization: 30.93 SS G_CDS: 0.33 Total: 31.26 kcal Atomic # 6 Polarization: 19.44 SS G_CDS: 7.83 Total: 27.27 kcal Atomic # 7 Polarization: -131.10 SS G_CDS: -6.88 Total: -137.98 kcal Atomic # 8 Polarization: -42.17 SS G_CDS: -1.90 Total: -44.07 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 2.03 Total: 49.66 kcal Total: -75.26 1.40 -73.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330406992.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.941 kcal (2) G-P(sol) polarization free energy of solvation -75.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds