Wall clock time and date at job start Sat Apr 11 2020 05:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34776 * 120.00093 * 2 1 4 4 O 1.21554 * 119.99971 * 184.84225 * 3 2 1 5 5 C 1.47835 * 120.00092 * 4.83881 * 3 2 1 6 6 C 1.40021 * 120.55734 * 141.38210 * 5 3 2 7 7 C 1.38357 * 118.28841 * 179.97438 * 6 5 3 8 8 C 1.38352 * 119.30212 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.46023 * 179.97438 * 8 7 6 10 10 F 1.39900 * 109.47250 * 209.99705 * 9 8 7 11 11 F 1.39901 * 109.47247 * 329.99714 * 9 8 7 12 12 N 1.31928 * 121.08255 * 0.26648 * 8 7 6 13 13 C 1.31697 * 121.87666 * 359.43865 * 12 8 7 14 14 C 1.46497 * 119.99769 * 180.02562 * 2 1 3 15 15 H 1.09004 * 109.47368 * 179.97438 * 14 2 1 16 16 C 1.52999 * 109.47239 * 299.99758 * 14 2 1 17 17 N 1.46496 * 109.47048 * 305.00347 * 16 14 2 18 18 C 1.36937 * 120.00074 * 179.97438 * 17 16 14 19 19 H 1.07998 * 120.00215 * 0.02562 * 18 17 16 20 20 C 1.38816 * 120.00222 * 179.97438 * 18 17 16 21 21 N 1.31615 * 120.00141 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 119.99911 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.46882 * 89.99543 * 22 20 18 24 24 H 1.48497 * 109.47550 * 209.99823 * 22 20 18 25 25 H 1.48503 * 109.47216 * 329.99941 * 22 20 18 26 26 C 1.52998 * 109.47341 * 59.99677 * 14 2 1 27 27 C 1.52995 * 117.50220 * 248.74644 * 26 14 2 28 28 C 1.53001 * 117.49960 * 180.08502 * 26 14 2 29 29 H 1.09001 * 109.46750 * 85.17145 * 1 2 3 30 30 H 1.08997 * 109.47174 * 205.17556 * 1 2 3 31 31 H 1.09001 * 109.46599 * 325.17636 * 1 2 3 32 32 H 1.07999 * 120.85788 * 359.96631 * 6 5 3 33 33 H 1.08001 * 120.35213 * 180.02562 * 7 6 5 34 34 H 1.08998 * 109.47217 * 89.99788 * 9 8 7 35 35 H 1.07993 * 119.71885 * 180.26523 * 13 12 8 36 36 H 1.09007 * 109.47123 * 65.00275 * 16 14 2 37 37 H 1.08999 * 109.47730 * 185.00094 * 16 14 2 38 38 H 0.96997 * 120.00466 * 359.97438 * 17 16 14 39 39 H 0.96997 * 120.00298 * 180.02562 * 21 20 18 40 40 H 1.08998 * 115.55041 * 34.42125 * 26 14 2 41 41 H 1.09002 * 117.49839 * 359.97438 * 27 26 14 42 42 H 1.09004 * 117.50198 * 145.02217 * 27 26 14 43 43 H 1.09007 * 117.49931 * 214.98053 * 28 26 14 44 44 H 1.09002 * 117.50056 * 359.97438 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3512 1.1690 -0.0889 5 6 1.4038 2.4452 0.1080 6 6 1.9192 3.5007 0.8701 7 6 1.1924 4.6761 0.9384 8 6 -0.0089 4.7699 0.2586 9 6 -0.8037 6.0482 0.3310 10 9 -2.1667 5.7576 0.2085 11 9 -0.5690 6.6743 1.5599 12 7 -0.4729 3.7566 -0.4474 13 6 0.1845 2.6198 -0.5476 14 6 2.1975 -1.2687 -0.0006 15 1 3.2692 -1.0696 -0.0009 16 6 1.8279 -2.0716 1.2483 17 7 2.0707 -1.2574 2.4418 18 6 1.8103 -1.7697 3.6847 19 1 1.4264 -2.7741 3.7852 20 6 2.0409 -0.9984 4.8156 21 7 1.7911 -1.4910 6.0103 22 14 2.7056 0.7386 4.6419 23 1 1.5734 1.6925 4.5258 24 1 3.5193 1.0791 5.8365 25 1 3.5525 0.8252 3.4251 26 6 1.8278 -2.0705 -1.2501 27 6 1.0114 -3.3494 -1.0530 28 6 2.4912 -3.4368 -1.4347 29 1 -0.3633 0.0865 -1.0240 30 1 -0.3633 -0.9300 0.4371 31 1 -0.3632 0.8437 0.5869 32 1 2.8597 3.4000 1.3913 33 1 1.5590 5.5116 1.5163 34 1 -0.4995 6.7116 -0.4787 35 1 -0.2257 1.8144 -1.1385 36 1 0.7741 -2.3470 1.2046 37 1 2.4376 -2.9739 1.2939 38 1 2.4159 -0.3554 2.3516 39 1 1.9519 -0.9520 6.8005 40 1 1.6316 -1.4812 -2.1458 41 1 0.7380 -3.6198 -0.0331 42 1 0.2784 -3.6017 -1.8193 43 1 2.7311 -3.7465 -2.4519 44 1 3.1914 -3.7643 -0.6662 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331286855.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:21 Heat of formation + Delta-G solvation = -34.668898 kcal Electronic energy + Delta-G solvation = -30111.463184 eV Core-core repulsion = 25701.962527 eV Total energy + Delta-G solvation = -4409.500657 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.29527 -47.29874 -41.09403 -39.65402 -37.89901 -35.35586 -34.38861 -33.03847 -32.53478 -31.34288 -28.91737 -27.38474 -26.84627 -24.64290 -23.98427 -23.06151 -22.51088 -21.78837 -20.64469 -19.13330 -18.14606 -18.00734 -17.84465 -17.57190 -17.26585 -16.70129 -16.21290 -15.77880 -15.29972 -15.12005 -14.62130 -14.26815 -14.18641 -14.06293 -13.97976 -13.66413 -13.56989 -13.54545 -13.38110 -13.05556 -12.76888 -12.70680 -12.45618 -12.17813 -11.74144 -11.68402 -11.53572 -11.24519 -10.94013 -10.85604 -10.60146 -10.29504 -10.26158 -10.18680 -9.91453 -9.68771 -9.65323 -9.48384 -8.95850 -8.61184 -7.29518 -5.82610 -3.18000 0.22773 0.84441 2.53882 2.79688 3.06479 3.31113 3.35838 3.37834 3.40045 3.71593 3.84306 3.93295 4.26227 4.38731 4.47651 4.54319 4.57152 4.68728 4.80001 4.87780 4.91502 5.00256 5.06823 5.16490 5.21452 5.36689 5.44197 5.54930 5.56215 5.65931 5.68696 5.72050 5.78851 5.83625 5.96510 6.07146 6.14878 6.20562 6.25521 6.47119 6.67128 7.30752 7.34605 7.92107 8.05346 8.36319 9.14831 9.87683 10.07091 11.35648 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.009466 B = 0.004338 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2957.333126 B = 6453.100065 C = 8384.586380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.587 5.587 3 C 0.560 3.440 4 O -0.528 6.528 5 C -0.157 4.157 6 C -0.021 4.021 7 C -0.143 4.143 8 C 0.060 3.940 9 C 0.329 3.671 10 F -0.185 7.185 11 F -0.193 7.193 12 N -0.457 5.457 13 C 0.129 3.871 14 C 0.158 3.842 15 H 0.107 0.893 16 C 0.146 3.854 17 N -0.752 5.752 18 C -0.245 4.245 19 H 0.091 0.909 20 C 0.010 3.990 21 N -0.931 5.931 22 Si 0.871 3.129 23 H -0.284 1.284 24 H -0.288 1.288 25 H -0.274 1.274 26 C -0.160 4.160 27 C -0.182 4.182 28 C -0.171 4.171 29 H 0.059 0.941 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.152 0.848 33 H 0.152 0.848 34 H 0.132 0.868 35 H 0.178 0.822 36 H 0.037 0.963 37 H 0.040 0.960 38 H 0.361 0.639 39 H 0.260 0.740 40 H 0.105 0.895 41 H 0.108 0.892 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.180 9.941 -18.257 21.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.318 5.318 3 C 0.347 3.653 4 O -0.405 6.405 5 C -0.163 4.163 6 C -0.047 4.047 7 C -0.163 4.163 8 C -0.078 4.078 9 C 0.274 3.726 10 F -0.166 7.166 11 F -0.174 7.174 12 N -0.165 5.165 13 C -0.029 4.029 14 C 0.055 3.945 15 H 0.124 0.876 16 C 0.018 3.982 17 N -0.397 5.397 18 C -0.374 4.374 19 H 0.109 0.891 20 C -0.186 4.186 21 N -0.579 5.579 22 Si 0.701 3.299 23 H -0.210 1.210 24 H -0.214 1.214 25 H -0.200 1.200 26 C -0.180 4.180 27 C -0.219 4.219 28 C -0.209 4.209 29 H 0.077 0.923 30 H 0.107 0.893 31 H 0.089 0.911 32 H 0.169 0.831 33 H 0.170 0.830 34 H 0.149 0.851 35 H 0.194 0.806 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.194 0.806 39 H 0.070 0.930 40 H 0.123 0.877 41 H 0.127 0.873 42 H 0.109 0.891 43 H 0.111 0.889 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.440 9.873 -18.504 21.438 hybrid contribution 1.121 1.121 0.660 1.717 sum -3.319 10.994 -17.844 21.220 Atomic orbital electron populations 1.22128 0.79384 1.04897 1.00796 1.47593 1.07220 1.05320 1.71632 1.18030 0.87012 0.83257 0.77015 1.90804 1.13176 1.86916 1.49559 1.21148 0.97392 0.96173 1.01539 1.21740 0.99108 0.90522 0.93325 1.21830 0.95071 0.99586 0.99789 1.21834 0.94159 0.95378 0.96435 1.20074 0.77468 0.90223 0.84816 1.93045 1.33067 1.94452 1.96035 1.93035 1.94221 1.83100 1.47055 1.67335 1.33141 0.99587 1.16443 1.23435 0.89490 0.94505 0.95504 1.20991 0.97907 0.81892 0.93737 0.87561 1.21131 0.98682 0.93491 0.84850 1.42644 1.80027 1.14879 1.02184 1.19020 1.36727 1.00029 0.81652 0.89095 1.24611 1.01234 0.97658 0.95128 1.69681 1.54431 1.36865 0.96907 0.86714 0.79169 0.86674 0.77329 1.21049 1.21414 1.19999 1.22520 1.06146 0.90211 0.99109 1.23226 0.94090 1.00946 1.03630 1.22973 0.96229 0.99043 1.02644 0.92253 0.89303 0.91051 0.83063 0.83008 0.85145 0.80565 0.94542 0.94248 0.80624 0.92995 0.87724 0.87334 0.89057 0.88910 0.88250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.84 8.21 59.85 0.49 1.33 16 2 N -0.59 -8.68 2.24 -175.05 -0.39 -9.07 16 3 C 0.56 9.13 7.08 -12.33 -0.09 9.05 16 4 O -0.53 -10.21 16.27 5.32 0.09 -10.13 16 5 C -0.16 -2.22 5.26 -104.82 -0.55 -2.77 16 6 C -0.02 -0.28 9.79 -38.87 -0.38 -0.66 16 7 C -0.14 -1.61 9.42 -39.50 -0.37 -1.98 16 8 C 0.06 0.69 6.58 -82.51 -0.54 0.15 16 9 C 0.33 3.03 5.72 36.01 0.21 3.23 16 10 F -0.18 -2.14 17.05 2.25 0.04 -2.10 16 11 F -0.19 -1.97 16.45 2.25 0.04 -1.94 16 12 N -0.46 -5.67 9.93 -9.14 -0.09 -5.76 16 13 C 0.13 1.55 8.76 -17.13 -0.15 1.40 16 14 C 0.16 2.42 2.58 -67.93 -0.18 2.25 16 15 H 0.11 1.88 6.91 -51.93 -0.36 1.52 16 16 C 0.15 2.67 4.15 -4.04 -0.02 2.65 16 17 N -0.75 -17.76 5.24 -59.91 -0.31 -18.07 16 18 C -0.24 -6.86 10.47 -15.06 -0.16 -7.02 16 19 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 20 C 0.01 0.29 5.50 -17.43 -0.10 0.19 16 21 N -0.93 -29.26 13.97 55.49 0.78 -28.49 16 22 Si 0.87 22.50 27.74 -169.99 -4.71 17.78 16 23 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 25 H -0.27 -6.92 6.52 56.52 0.37 -6.55 16 26 C -0.16 -1.89 5.48 -90.62 -0.50 -2.39 16 27 C -0.18 -1.94 9.59 -26.70 -0.26 -2.19 16 28 C -0.17 -1.85 9.94 -26.69 -0.27 -2.11 16 29 H 0.06 0.51 6.88 -51.93 -0.36 0.15 16 30 H 0.09 1.10 6.53 -51.93 -0.34 0.76 16 31 H 0.07 0.89 5.83 -51.93 -0.30 0.59 16 32 H 0.15 2.03 8.06 -52.49 -0.42 1.60 16 33 H 0.15 1.32 7.59 -52.49 -0.40 0.92 16 34 H 0.13 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.18 1.67 5.25 -52.49 -0.28 1.39 16 36 H 0.04 0.64 5.33 -51.93 -0.28 0.37 16 37 H 0.04 0.73 7.44 -51.93 -0.39 0.35 16 38 H 0.36 8.74 4.93 -40.82 -0.20 8.54 16 39 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 40 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.11 1.30 5.80 -51.93 -0.30 0.99 16 42 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.10 1.15 7.66 -51.93 -0.40 0.75 16 LS Contribution 365.29 15.07 5.50 5.50 Total: -1.00 -34.90 365.29 -7.22 -42.12 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -5.30 Total: 9.01 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: -2.85 Total: 1.14 kcal Atomic # 7 Polarization: -61.37 SS G_CDS: -0.02 Total: -61.39 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.09 Total: -10.13 kcal Atomic # 9 Polarization: -4.12 SS G_CDS: 0.08 Total: -4.04 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.71 Total: 17.78 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.90 -7.22 -42.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331286855.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.448 kcal (2) G-P(sol) polarization free energy of solvation -34.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds