Wall clock time and date at job start Sat Apr 11 2020 05:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34776 * 120.00093 * 2 1 4 4 O 1.21554 * 119.99971 * 184.84225 * 3 2 1 5 5 C 1.47835 * 120.00092 * 4.83881 * 3 2 1 6 6 C 1.40021 * 120.55734 * 141.38210 * 5 3 2 7 7 C 1.38357 * 118.28841 * 179.97438 * 6 5 3 8 8 C 1.38352 * 119.30212 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.46023 * 179.97438 * 8 7 6 10 10 F 1.39900 * 109.47250 * 209.99705 * 9 8 7 11 11 F 1.39901 * 109.47247 * 329.99714 * 9 8 7 12 12 N 1.31928 * 121.08255 * 0.26648 * 8 7 6 13 13 C 1.31697 * 121.87666 * 359.43865 * 12 8 7 14 14 C 1.46497 * 119.99769 * 180.02562 * 2 1 3 15 15 H 1.09004 * 109.47368 * 179.97438 * 14 2 1 16 16 C 1.52999 * 109.47239 * 299.99758 * 14 2 1 17 17 N 1.46496 * 109.47048 * 305.00347 * 16 14 2 18 18 C 1.36937 * 120.00074 * 179.97438 * 17 16 14 19 19 H 1.07998 * 120.00215 * 0.02562 * 18 17 16 20 20 C 1.38816 * 120.00222 * 179.97438 * 18 17 16 21 21 N 1.31615 * 120.00141 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 119.99911 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.46882 * 89.99543 * 22 20 18 24 24 H 1.48497 * 109.47550 * 209.99823 * 22 20 18 25 25 H 1.48503 * 109.47216 * 329.99941 * 22 20 18 26 26 C 1.52998 * 109.47341 * 59.99677 * 14 2 1 27 27 C 1.52995 * 117.50220 * 248.74644 * 26 14 2 28 28 C 1.53001 * 117.49960 * 180.08502 * 26 14 2 29 29 H 1.09001 * 109.46750 * 85.17145 * 1 2 3 30 30 H 1.08997 * 109.47174 * 205.17556 * 1 2 3 31 31 H 1.09001 * 109.46599 * 325.17636 * 1 2 3 32 32 H 1.07999 * 120.85788 * 359.96631 * 6 5 3 33 33 H 1.08001 * 120.35213 * 180.02562 * 7 6 5 34 34 H 1.08998 * 109.47217 * 89.99788 * 9 8 7 35 35 H 1.07993 * 119.71885 * 180.26523 * 13 12 8 36 36 H 1.09007 * 109.47123 * 65.00275 * 16 14 2 37 37 H 1.08999 * 109.47730 * 185.00094 * 16 14 2 38 38 H 0.96997 * 120.00466 * 359.97438 * 17 16 14 39 39 H 0.96997 * 120.00298 * 180.02562 * 21 20 18 40 40 H 1.08998 * 115.55041 * 34.42125 * 26 14 2 41 41 H 1.09002 * 117.49839 * 359.97438 * 27 26 14 42 42 H 1.09004 * 117.50198 * 145.02217 * 27 26 14 43 43 H 1.09007 * 117.49931 * 214.98053 * 28 26 14 44 44 H 1.09002 * 117.50056 * 359.97438 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3512 1.1690 -0.0889 5 6 1.4038 2.4452 0.1080 6 6 1.9192 3.5007 0.8701 7 6 1.1924 4.6761 0.9384 8 6 -0.0089 4.7699 0.2586 9 6 -0.8037 6.0482 0.3310 10 9 -2.1667 5.7576 0.2085 11 9 -0.5690 6.6743 1.5599 12 7 -0.4729 3.7566 -0.4474 13 6 0.1845 2.6198 -0.5476 14 6 2.1975 -1.2687 -0.0006 15 1 3.2692 -1.0696 -0.0009 16 6 1.8279 -2.0716 1.2483 17 7 2.0707 -1.2574 2.4418 18 6 1.8103 -1.7697 3.6847 19 1 1.4264 -2.7741 3.7852 20 6 2.0409 -0.9984 4.8156 21 7 1.7911 -1.4910 6.0103 22 14 2.7056 0.7386 4.6419 23 1 1.5734 1.6925 4.5258 24 1 3.5193 1.0791 5.8365 25 1 3.5525 0.8252 3.4251 26 6 1.8278 -2.0705 -1.2501 27 6 1.0114 -3.3494 -1.0530 28 6 2.4912 -3.4368 -1.4347 29 1 -0.3633 0.0865 -1.0240 30 1 -0.3633 -0.9300 0.4371 31 1 -0.3632 0.8437 0.5869 32 1 2.8597 3.4000 1.3913 33 1 1.5590 5.5116 1.5163 34 1 -0.4995 6.7116 -0.4787 35 1 -0.2257 1.8144 -1.1385 36 1 0.7741 -2.3470 1.2046 37 1 2.4376 -2.9739 1.2939 38 1 2.4159 -0.3554 2.3516 39 1 1.9519 -0.9520 6.8005 40 1 1.6316 -1.4812 -2.1458 41 1 0.7380 -3.6198 -0.0331 42 1 0.2784 -3.6017 -1.8193 43 1 2.7311 -3.7465 -2.4519 44 1 3.1914 -3.7643 -0.6662 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331286855.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:20 Heat of formation + Delta-G solvation = -57.285195 kcal Electronic energy + Delta-G solvation = -30112.443900 eV Core-core repulsion = 25701.962527 eV Total energy + Delta-G solvation = -4410.481374 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.05340 -48.07415 -42.13852 -40.73335 -39.04344 -36.61039 -36.09787 -34.06418 -33.66895 -33.16424 -30.28555 -28.34855 -28.01312 -26.11849 -24.93423 -24.16186 -23.74221 -23.05491 -21.70250 -20.57125 -19.42535 -18.99950 -18.95371 -18.56149 -18.22604 -17.83993 -17.21839 -17.09530 -16.37692 -16.30719 -16.10009 -15.48884 -15.41237 -15.20875 -14.91996 -14.82618 -14.78491 -14.65596 -14.48091 -14.36658 -14.00302 -13.78596 -13.63870 -13.49563 -13.16460 -13.10883 -12.86425 -12.37398 -12.33951 -12.25028 -12.09041 -11.90996 -11.64182 -11.23773 -11.20250 -11.08962 -10.89489 -10.71950 -10.42432 -9.78504 -9.37224 -8.11245 -5.42865 -0.72787 -0.08698 1.22435 1.26540 1.32825 1.37727 1.71823 2.25219 2.36525 2.40569 2.92216 3.03152 3.13309 3.20611 3.22111 3.45533 3.52142 3.63897 3.80216 3.83424 3.95808 3.97560 4.04981 4.08320 4.12582 4.16667 4.32698 4.35173 4.50432 4.64319 4.66897 4.75936 4.76444 4.85545 4.92432 5.03521 5.07221 5.16435 5.21962 5.34699 5.44456 5.68564 6.12920 6.15735 6.42740 6.85626 6.98507 7.75212 7.92333 9.10197 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.009466 B = 0.004338 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2957.333126 B = 6453.100065 C = 8384.586380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.586 5.586 3 C 0.555 3.445 4 O -0.570 6.570 5 C -0.177 4.177 6 C -0.039 4.039 7 C -0.139 4.139 8 C 0.058 3.942 9 C 0.328 3.672 10 F -0.199 7.199 11 F -0.199 7.199 12 N -0.467 5.467 13 C 0.139 3.861 14 C 0.166 3.834 15 H 0.079 0.921 16 C 0.145 3.855 17 N -0.756 5.756 18 C -0.227 4.227 19 H 0.067 0.933 20 C -0.052 4.052 21 N -0.976 5.976 22 Si 0.934 3.066 23 H -0.275 1.275 24 H -0.290 1.290 25 H -0.271 1.271 26 C -0.161 4.161 27 C -0.171 4.171 28 C -0.171 4.171 29 H 0.102 0.898 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.143 0.857 33 H 0.176 0.824 34 H 0.180 0.820 35 H 0.201 0.799 36 H 0.051 0.949 37 H 0.037 0.963 38 H 0.359 0.641 39 H 0.258 0.742 40 H 0.123 0.877 41 H 0.092 0.908 42 H 0.117 0.883 43 H 0.115 0.885 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.384 11.244 -20.786 24.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.316 5.316 3 C 0.343 3.657 4 O -0.450 6.450 5 C -0.182 4.182 6 C -0.065 4.065 7 C -0.158 4.158 8 C -0.080 4.080 9 C 0.274 3.726 10 F -0.180 7.180 11 F -0.180 7.180 12 N -0.176 5.176 13 C -0.020 4.020 14 C 0.062 3.938 15 H 0.097 0.903 16 C 0.018 3.982 17 N -0.402 5.402 18 C -0.358 4.358 19 H 0.085 0.915 20 C -0.245 4.245 21 N -0.627 5.627 22 Si 0.762 3.238 23 H -0.201 1.201 24 H -0.217 1.217 25 H -0.196 1.196 26 C -0.180 4.180 27 C -0.207 4.207 28 C -0.208 4.208 29 H 0.120 0.880 30 H 0.102 0.898 31 H 0.085 0.915 32 H 0.161 0.839 33 H 0.194 0.806 34 H 0.196 0.804 35 H 0.217 0.783 36 H 0.069 0.931 37 H 0.055 0.945 38 H 0.191 0.809 39 H 0.067 0.933 40 H 0.141 0.859 41 H 0.110 0.890 42 H 0.136 0.864 43 H 0.134 0.866 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.678 11.161 -21.081 24.520 hybrid contribution 1.464 0.625 1.416 2.130 sum -4.214 11.786 -19.666 23.311 Atomic orbital electron populations 1.22364 0.77489 1.04407 1.03391 1.47704 1.08390 1.04695 1.70795 1.18410 0.86691 0.84248 0.76316 1.90771 1.14976 1.87584 1.51686 1.21080 0.98479 0.95377 1.03299 1.21863 0.99342 0.91482 0.93811 1.22044 0.94783 0.99420 0.99585 1.22303 0.94292 0.95974 0.95430 1.20536 0.76329 0.89909 0.85808 1.93016 1.34298 1.94600 1.96115 1.93024 1.94164 1.83009 1.47809 1.67434 1.33260 0.99899 1.16991 1.23720 0.88440 0.95011 0.94798 1.20759 0.96654 0.82389 0.93989 0.90253 1.21333 0.99304 0.93222 0.84312 1.42712 1.79838 1.15256 1.02354 1.19042 1.34460 0.98827 0.83424 0.91480 1.25274 1.02741 1.01488 0.94949 1.69828 1.56759 1.38442 0.97662 0.85714 0.78670 0.82378 0.77022 1.20126 1.21658 1.19625 1.22381 1.07500 0.90384 0.97734 1.23237 0.94546 0.99383 1.03560 1.23062 0.96189 0.98000 1.03553 0.87999 0.89802 0.91546 0.83899 0.80611 0.80377 0.78255 0.93103 0.94486 0.80901 0.93267 0.85936 0.88951 0.86434 0.86634 0.89671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.40 8.21 127.77 1.05 2.45 16 2 N -0.59 -16.66 2.24 -826.01 -1.85 -18.52 16 3 C 0.56 17.89 7.08 86.78 0.61 18.51 16 4 O -0.57 -22.46 16.27 -3.89 -0.06 -22.53 16 5 C -0.18 -4.82 5.26 -19.99 -0.11 -4.92 16 6 C -0.04 -1.01 9.79 22.73 0.22 -0.79 16 7 C -0.14 -2.86 9.42 22.33 0.21 -2.65 16 8 C 0.06 1.19 6.58 42.57 0.28 1.47 16 9 C 0.33 5.05 5.72 71.24 0.41 5.46 16 10 F -0.20 -4.13 17.05 44.97 0.77 -3.36 16 11 F -0.20 -3.54 16.45 44.97 0.74 -2.80 16 12 N -0.47 -10.48 9.93 -182.82 -1.82 -12.29 16 13 C 0.14 3.03 8.76 85.02 0.74 3.77 16 14 C 0.17 4.98 2.58 44.99 0.12 5.10 16 15 H 0.08 2.85 6.91 -2.38 -0.02 2.83 16 16 C 0.14 5.26 4.15 86.38 0.36 5.61 16 17 N -0.76 -35.94 5.24 -343.45 -1.80 -37.74 16 18 C -0.23 -12.93 10.47 84.03 0.88 -12.05 16 19 H 0.07 4.10 8.06 -2.91 -0.02 4.07 16 20 C -0.05 -3.13 5.50 84.86 0.47 -2.67 16 21 N -0.98 -62.78 13.97 21.65 0.30 -62.47 16 22 Si 0.93 47.46 27.74 68.60 1.90 49.37 16 23 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 24 H -0.29 -14.76 7.11 99.48 0.71 -14.06 16 25 H -0.27 -13.43 6.52 99.48 0.65 -12.78 16 26 C -0.16 -3.43 5.48 -10.80 -0.06 -3.49 16 27 C -0.17 -3.17 9.59 30.62 0.29 -2.88 16 28 C -0.17 -3.32 9.94 30.62 0.30 -3.02 16 29 H 0.10 1.33 6.88 -2.39 -0.02 1.31 16 30 H 0.08 1.90 6.53 -2.39 -0.02 1.89 16 31 H 0.07 1.52 5.83 -2.39 -0.01 1.51 16 32 H 0.14 3.87 8.06 -2.91 -0.02 3.85 16 33 H 0.18 2.63 7.59 -2.91 -0.02 2.61 16 34 H 0.18 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.20 3.15 5.25 -2.91 -0.02 3.13 16 36 H 0.05 1.75 5.33 -2.38 -0.01 1.73 16 37 H 0.04 1.38 7.44 -2.39 -0.02 1.37 16 38 H 0.36 17.40 4.93 -92.71 -0.46 16.95 16 39 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 40 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.09 2.05 5.80 -2.39 -0.01 2.03 16 42 H 0.12 1.63 8.14 -2.38 -0.02 1.61 16 43 H 0.12 1.75 8.14 -2.38 -0.02 1.73 16 44 H 0.08 1.91 7.66 -2.39 -0.02 1.89 16 Total: -1.00 -77.61 365.29 4.51 -73.10 By element: Atomic # 1 Polarization: 26.78 SS G_CDS: 0.55 Total: 27.33 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: 5.78 Total: 9.91 kcal Atomic # 7 Polarization: -125.85 SS G_CDS: -5.17 Total: -131.02 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.06 Total: -22.53 kcal Atomic # 9 Polarization: -7.67 SS G_CDS: 1.51 Total: -6.16 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 1.90 Total: 49.37 kcal Total: -77.61 4.51 -73.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331286855.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.817 kcal (2) G-P(sol) polarization free energy of solvation -77.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds