Wall clock time and date at job start Sat Apr 11 2020 05:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.45752 * 117.94615 * 2 1 4 4 C 1.52922 * 110.48578 * 199.07313 * 3 2 1 5 5 C 1.53342 * 108.67565 * 309.24866 * 4 3 2 6 6 C 1.53069 * 108.42527 * 67.53226 * 5 4 3 7 7 H 1.09002 * 109.40300 * 71.22794 * 6 5 4 8 8 N 1.46498 * 109.40101 * 191.05685 * 6 5 4 9 9 C 1.34779 * 120.00114 * 205.16867 * 8 6 5 10 10 O 1.21354 * 119.99912 * 0.02562 * 9 8 6 11 11 C 1.49446 * 120.00159 * 179.97438 * 9 8 6 12 12 O 1.21349 * 120.00060 * 0.02562 * 11 9 8 13 13 N 1.34779 * 120.00159 * 179.97438 * 11 9 8 14 14 C 1.47424 * 125.64451 * 0.02599 * 13 11 9 15 15 C 1.54907 * 104.83231 * 204.08939 * 14 13 11 16 16 C 1.55164 * 101.58422 * 322.99701 * 15 14 13 17 17 O 1.42900 * 110.71503 * 277.13573 * 16 15 14 18 18 C 1.50694 * 110.72069 * 153.86336 * 16 15 14 19 19 H 1.08004 * 120.00165 * 359.97438 * 18 16 15 20 20 C 1.37874 * 119.99923 * 180.02562 * 18 16 15 21 21 N 1.31519 * 120.00046 * 359.97438 * 20 18 16 22 22 Si 1.86804 * 120.00361 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46737 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.47050 * 119.99493 * 22 20 18 25 25 H 1.48497 * 109.47115 * 240.00169 * 22 20 18 26 26 C 1.47022 * 125.64978 * 179.72415 * 13 11 9 27 27 C 1.33182 * 117.99269 * 180.02562 * 2 1 3 28 28 O 1.21283 * 118.12083 * 357.79175 * 27 2 1 29 29 H 1.08997 * 109.47208 * 89.99944 * 1 2 3 30 30 H 1.08993 * 109.47099 * 210.00474 * 1 2 3 31 31 H 1.09005 * 109.46708 * 329.99676 * 1 2 3 32 32 H 1.09000 * 109.30135 * 78.76855 * 3 2 1 33 33 H 1.08995 * 109.13794 * 319.27803 * 3 2 1 34 34 H 1.09000 * 109.60631 * 189.48998 * 4 3 2 35 35 H 1.08996 * 109.73818 * 69.08722 * 4 3 2 36 36 H 1.08999 * 109.67677 * 307.79803 * 5 4 3 37 37 H 1.08998 * 109.70056 * 187.27943 * 5 4 3 38 38 H 0.97002 * 120.00220 * 25.17028 * 8 6 5 39 39 H 1.08996 * 110.37428 * 322.93252 * 14 13 11 40 40 H 1.09004 * 110.36533 * 85.14747 * 14 13 11 41 41 H 1.09002 * 111.00134 * 81.06643 * 15 14 13 42 42 H 1.09000 * 111.00524 * 204.88251 * 15 14 13 43 43 H 0.96708 * 113.99455 * 179.97438 * 17 16 15 44 44 H 0.97000 * 119.99937 * 180.02562 * 21 20 18 45 45 H 1.09000 * 109.87584 * 298.39349 * 26 13 11 46 46 H 1.08994 * 109.88303 * 59.55520 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1481 1.2876 0.0000 4 6 3.5949 1.1259 -0.4681 5 6 4.2493 -0.0014 0.3397 6 6 3.5838 -1.3240 -0.0486 7 1 3.8881 -1.5997 -1.0583 8 7 3.9994 -2.3712 0.8878 9 6 3.9843 -3.6631 0.5041 10 8 3.6268 -3.9589 -0.6172 11 6 4.4088 -4.7313 1.4592 12 8 4.7667 -4.4355 2.5804 13 7 4.3932 -6.0233 1.0757 14 6 3.9828 -6.5211 -0.2499 15 6 3.5498 -7.9883 -0.0059 16 6 4.5787 -8.4432 1.0627 17 8 5.8044 -8.8428 0.4463 18 6 4.0151 -9.5586 1.9048 19 1 3.0175 -9.9268 1.7158 20 6 4.7726 -10.1085 2.9171 21 7 5.9872 -9.6598 3.1476 22 14 4.0738 -11.4907 3.9614 23 1 2.6982 -11.8108 3.5026 24 1 4.9324 -12.6949 3.8276 25 1 4.0354 -11.0656 5.3837 26 6 4.7885 -7.1690 1.9079 27 6 2.0901 -1.1760 -0.0005 28 8 1.4146 -2.1825 0.0402 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 2.1399 1.6997 1.0090 33 1 1.6262 1.9689 -0.6718 34 1 4.1385 2.0563 -0.3042 35 1 3.6128 0.8739 -1.5284 36 1 4.1087 0.1812 1.4050 37 1 5.3143 -0.0458 0.1124 38 1 4.2855 -2.1348 1.7841 39 1 3.1456 -5.9370 -0.6320 40 1 4.8207 -6.4819 -0.9459 41 1 2.5335 -8.0357 0.3853 42 1 3.6438 -8.5800 -0.9164 43 1 6.4817 -9.1359 1.0714 44 1 6.5203 -10.0469 3.8596 45 1 5.8374 -7.0776 2.1902 46 1 4.1646 -7.2116 2.8006 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332475546.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:30 Heat of formation + Delta-G solvation = -135.771518 kcal Electronic energy + Delta-G solvation = -30554.051229 eV Core-core repulsion = 26251.253949 eV Total energy + Delta-G solvation = -4302.797280 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.14242 -39.98993 -38.32003 -37.15572 -36.81153 -35.59143 -34.24664 -32.78711 -32.15534 -30.10193 -29.36134 -27.89548 -27.45551 -25.98342 -24.69015 -23.27711 -22.77345 -21.70127 -19.93504 -19.51101 -18.93526 -17.47864 -17.19436 -17.04384 -16.83151 -16.66403 -16.03435 -15.55880 -15.29100 -15.02942 -14.63735 -14.51899 -14.16248 -14.10056 -13.93379 -13.61571 -12.96921 -12.95231 -12.94303 -12.80280 -12.56725 -12.37505 -12.27960 -11.94320 -11.73103 -11.70507 -11.50512 -11.41690 -11.07276 -10.98875 -10.73187 -10.52271 -10.45567 -10.31193 -10.11505 -9.31848 -9.16836 -9.06723 -9.02256 -8.64562 -8.30973 -7.96914 -6.28981 -4.37020 1.81824 2.22245 2.64047 2.84571 3.21416 3.30041 3.34359 3.65483 3.85835 4.14669 4.19591 4.20843 4.27965 4.38125 4.71078 4.81280 4.88302 4.98051 4.99385 5.05312 5.21152 5.27692 5.29823 5.44067 5.57215 5.59416 5.62736 5.89242 5.94075 6.04595 6.09191 6.14225 6.40238 6.56428 6.81231 6.84875 6.88944 7.10631 7.17854 7.24894 7.36653 7.74373 7.88258 7.96534 8.04579 8.07947 8.47710 8.67173 9.32036 9.45351 10.78905 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023795 B = 0.002533 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.441247 B =11051.162287 C =11211.832298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.610 5.610 3 C 0.111 3.889 4 C -0.132 4.132 5 C -0.131 4.131 6 C 0.139 3.861 7 H 0.122 0.878 8 N -0.697 5.697 9 C 0.520 3.480 10 O -0.499 6.499 11 C 0.510 3.490 12 O -0.540 6.540 13 N -0.573 5.573 14 C 0.098 3.902 15 C -0.121 4.121 16 C 0.248 3.752 17 O -0.584 6.584 18 C -0.534 4.534 19 H 0.069 0.931 20 C 0.069 3.931 21 N -0.897 5.897 22 Si 0.905 3.095 23 H -0.271 1.271 24 H -0.281 1.281 25 H -0.282 1.282 26 C 0.098 3.902 27 C 0.497 3.503 28 O -0.522 6.522 29 H 0.055 0.945 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.414 0.586 39 H 0.088 0.912 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.385 0.615 44 H 0.270 0.730 45 H 0.070 0.930 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.529 24.307 -6.332 25.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.345 5.345 3 C -0.011 4.011 4 C -0.171 4.171 5 C -0.170 4.170 6 C 0.031 3.969 7 H 0.140 0.860 8 N -0.352 5.352 9 C 0.301 3.699 10 O -0.372 6.372 11 C 0.292 3.708 12 O -0.420 6.420 13 N -0.305 5.305 14 C -0.024 4.024 15 C -0.159 4.159 16 C 0.207 3.793 17 O -0.394 6.394 18 C -0.572 4.572 19 H 0.087 0.913 20 C -0.134 4.134 21 N -0.537 5.537 22 Si 0.733 3.267 23 H -0.195 1.195 24 H -0.207 1.207 25 H -0.208 1.208 26 C -0.023 4.023 27 C 0.282 3.718 28 O -0.396 6.396 29 H 0.074 0.926 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.111 0.889 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.107 0.893 38 H 0.251 0.749 39 H 0.106 0.894 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.237 0.763 44 H 0.080 0.920 45 H 0.088 0.912 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.104 23.844 -6.945 25.354 hybrid contribution 0.106 -0.541 1.625 1.716 sum -4.998 23.302 -5.320 24.419 Atomic orbital electron populations 1.21693 0.79414 1.03374 1.02052 1.47259 1.07496 1.05861 1.73912 1.21460 0.93171 0.84717 1.01800 1.21848 0.94632 0.99649 1.00920 1.21978 1.01274 0.92115 1.01599 1.20802 0.90367 0.88612 0.97164 0.86035 1.45446 1.67342 1.04924 1.17511 1.20372 0.77942 0.83594 0.87955 1.90703 1.44290 1.81547 1.20676 1.19476 0.81067 0.82948 0.87335 1.90711 1.48893 1.81764 1.20596 1.48659 1.60412 1.04975 1.16438 1.22654 1.00350 0.95687 0.83711 1.22825 0.99277 0.93379 1.00379 1.19508 0.82594 0.89278 0.87874 1.86097 1.26345 1.87237 1.39759 1.21582 1.01872 1.18242 1.15549 0.91292 1.25093 0.94835 0.96838 0.96612 1.69586 1.09396 1.42283 1.32403 0.86317 0.79303 0.81347 0.79773 1.19540 1.20720 1.20768 1.23275 1.00394 0.83972 0.94641 1.20597 0.91204 0.83086 0.76884 1.90783 1.65519 1.35654 1.47637 0.92617 0.90062 0.91300 0.91435 0.90405 0.88853 0.90368 0.90128 0.89255 0.74888 0.89381 0.91363 0.90508 0.90292 0.76260 0.91958 0.91178 0.91015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.63 10.24 59.85 0.61 1.24 16 2 N -0.61 -5.52 3.20 -182.91 -0.59 -6.10 16 3 C 0.11 0.54 6.32 -4.49 -0.03 0.51 16 4 C -0.13 -0.53 6.02 -26.59 -0.16 -0.69 16 5 C -0.13 -0.80 5.51 -26.52 -0.15 -0.95 16 6 C 0.14 1.52 2.70 -69.30 -0.19 1.33 16 7 H 0.12 1.39 7.57 -51.93 -0.39 1.00 16 8 N -0.70 -9.62 4.96 -55.58 -0.28 -9.90 16 9 C 0.52 9.41 7.29 -11.59 -0.08 9.32 16 10 O -0.50 -9.77 13.00 4.22 0.05 -9.71 16 11 C 0.51 10.73 7.91 -11.59 -0.09 10.64 16 12 O -0.54 -12.13 16.80 5.50 0.09 -12.04 16 13 N -0.57 -12.75 3.33 -171.03 -0.57 -13.32 16 14 C 0.10 2.02 6.05 -2.53 -0.02 2.01 16 15 C -0.12 -2.61 6.23 -24.58 -0.15 -2.76 16 16 C 0.25 6.19 0.86 -89.93 -0.08 6.12 16 17 O -0.58 -15.09 13.08 -35.23 -0.46 -15.55 16 18 C -0.53 -14.19 8.11 -34.44 -0.28 -14.47 16 19 H 0.07 1.81 7.76 -52.48 -0.41 1.40 16 20 C 0.07 1.81 5.28 -17.82 -0.09 1.72 16 21 N -0.90 -23.92 10.97 55.43 0.61 -23.31 16 22 Si 0.91 20.64 29.54 -169.99 -5.02 15.62 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 C 0.10 2.43 5.53 -3.06 -0.02 2.42 16 27 C 0.50 6.38 7.19 -11.95 -0.09 6.29 16 28 O -0.52 -9.31 14.94 4.28 0.06 -9.25 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.87 7.13 -51.93 -0.37 0.50 16 31 H 0.07 0.36 8.01 -51.93 -0.42 -0.05 16 32 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.08 0.24 8.10 -51.93 -0.42 -0.18 16 34 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 35 H 0.08 0.33 8.12 -51.93 -0.42 -0.09 16 36 H 0.08 0.45 8.10 -51.93 -0.42 0.03 16 37 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.41 5.13 8.05 -40.82 -0.33 4.80 16 39 H 0.09 1.77 6.16 -51.93 -0.32 1.45 16 40 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 41 H 0.08 1.61 8.02 -51.93 -0.42 1.19 16 42 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 43 H 0.39 10.15 6.99 45.56 0.32 10.47 16 44 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 45 H 0.07 1.84 8.07 -51.93 -0.42 1.43 16 46 H 0.07 1.89 7.81 -51.93 -0.41 1.49 16 LS Contribution 373.46 15.07 5.63 5.63 Total: -1.00 -33.84 373.46 -7.37 -41.20 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: -6.09 Total: 14.00 kcal Atomic # 6 Polarization: 23.54 SS G_CDS: -0.81 Total: 22.73 kcal Atomic # 7 Polarization: -51.81 SS G_CDS: -0.82 Total: -52.63 kcal Atomic # 8 Polarization: -46.30 SS G_CDS: -0.25 Total: -46.55 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.84 -7.37 -41.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332475546.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.568 kcal (2) G-P(sol) polarization free energy of solvation -33.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds