Wall clock time and date at job start Sat Apr 11 2020 05:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31262 * 1 3 3 Si 1.86794 * 119.99867 * 2 1 4 4 H 1.48496 * 109.47535 * 275.08401 * 3 2 1 5 5 H 1.48504 * 109.47173 * 35.08887 * 3 2 1 6 6 H 1.48506 * 109.46851 * 155.08517 * 3 2 1 7 7 C 1.39074 * 119.99733 * 179.72093 * 2 1 3 8 8 H 1.08004 * 120.00479 * 27.59573 * 7 2 1 9 9 N 1.37105 * 120.00044 * 207.58689 * 7 2 1 10 10 C 1.35346 * 119.71135 * 41.07548 * 9 7 2 11 11 O 1.21725 * 121.28522 * 359.95550 * 10 9 7 12 12 C 1.46961 * 117.42522 * 179.97438 * 10 9 7 13 13 C 1.39366 * 121.91381 * 180.02562 * 12 10 9 14 14 C 1.37790 * 119.52277 * 179.97438 * 13 12 10 15 15 C 1.38881 * 120.57237 * 0.02562 * 14 13 12 16 16 C 1.37715 * 120.82070 * 359.94898 * 15 14 13 17 17 C 1.39634 * 119.69508 * 0.04933 * 16 15 14 18 18 N 1.35630 * 121.61585 * 180.02562 * 17 16 15 19 19 C 1.29834 * 121.62194 * 179.70943 * 18 17 16 20 20 C 1.50701 * 118.35051 * 180.26017 * 19 18 17 21 21 N 1.46904 * 109.46857 * 0.27761 * 20 19 18 22 22 C 1.47442 * 111.00067 * 69.87522 * 21 20 19 23 23 C 1.54319 * 107.23361 * 123.25677 * 22 21 20 24 24 C 1.55145 * 103.01723 * 22.28254 * 23 22 21 25 25 H 1.08998 * 110.98898 * 82.47876 * 24 23 22 26 26 C 1.53006 * 110.98768 * 206.25519 * 24 23 22 27 27 C 1.53001 * 117.49939 * 247.29376 * 26 24 23 28 28 C 1.53005 * 117.49373 * 178.63315 * 26 24 23 29 29 C 1.47846 * 110.99825 * 190.72120 * 21 20 19 30 30 H 0.97002 * 119.99931 * 0.02562 * 1 2 3 31 31 H 1.08008 * 120.24096 * 0.02562 * 13 12 10 32 32 H 1.07999 * 119.71936 * 180.02562 * 14 13 12 33 33 H 1.07996 * 119.59291 * 179.97438 * 15 14 13 34 34 H 1.08001 * 120.15347 * 180.02562 * 16 15 14 35 35 H 1.08998 * 109.47272 * 120.27467 * 20 19 18 36 36 H 1.09002 * 109.47156 * 240.28260 * 20 19 18 37 37 H 1.09000 * 109.88652 * 242.66134 * 22 21 20 38 38 H 1.09001 * 109.88756 * 3.85125 * 22 21 20 39 39 H 1.08995 * 110.70882 * 140.66230 * 23 22 21 40 40 H 1.09003 * 110.70710 * 263.90353 * 23 22 21 41 41 H 1.09001 * 115.55172 * 32.96787 * 26 24 23 42 42 H 1.09001 * 117.49567 * 359.97438 * 27 26 24 43 43 H 1.08990 * 117.49918 * 145.02311 * 27 26 24 44 44 H 1.09001 * 117.49237 * 214.97789 * 28 26 24 45 45 H 1.08995 * 117.50086 * 0.02562 * 28 26 24 46 46 H 1.09007 * 110.37164 * 332.46296 * 29 21 20 47 47 H 1.08997 * 110.37636 * 94.80293 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3126 0.0000 0.0000 3 14 2.2465 1.6177 0.0000 4 1 2.3866 2.1085 -1.3945 5 1 1.5019 2.6192 0.8048 6 1 3.5937 1.4115 0.5898 7 6 2.0079 -1.2044 0.0059 8 1 1.5601 -2.0887 -0.4231 9 7 3.2621 -1.2693 0.5560 10 6 3.5223 -0.6146 1.7117 11 8 2.6627 0.0357 2.2772 12 6 4.8830 -0.7188 2.2570 13 6 5.2529 -0.0832 3.4409 14 6 6.5426 -0.2147 3.9078 15 6 7.4730 -0.9729 3.2090 16 6 7.1277 -1.6094 2.0376 17 6 5.8270 -1.4916 1.5438 18 7 5.4447 -2.1021 0.3945 19 6 4.2338 -1.9971 -0.0619 20 6 3.8875 -2.7113 -1.3429 21 7 5.0692 -3.4301 -1.8377 22 6 5.3930 -4.5761 -0.9683 23 6 5.3953 -5.8378 -1.8568 24 6 5.6327 -5.2636 -3.2785 25 1 6.6934 -5.0858 -3.4556 26 6 5.0490 -6.1892 -4.3478 27 6 6.0322 -6.8995 -5.2805 28 6 5.1723 -5.7480 -5.8077 29 6 4.8490 -3.9291 -3.2119 30 1 -0.4850 0.8401 -0.0004 31 1 4.5337 0.5075 3.9888 32 1 6.8326 0.2762 4.8250 33 1 8.4796 -1.0650 3.5892 34 1 7.8598 -2.1967 1.5032 35 1 3.0819 -3.4215 -1.1567 36 1 3.5659 -1.9843 -2.0887 37 1 6.3771 -4.4358 -0.5210 38 1 4.6388 -4.6738 -0.1874 39 1 6.2058 -6.5085 -1.5718 40 1 4.4339 -6.3487 -1.8032 41 1 4.1477 -6.7305 -4.0601 42 1 7.0948 -6.7070 -5.1324 43 1 5.7776 -7.9079 -5.6065 44 1 4.3523 -5.9995 -6.4803 45 1 5.6695 -4.7986 -6.0062 46 1 3.7872 -4.1034 -3.3867 47 1 5.2431 -3.2207 -3.9405 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764486443.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:35 Heat of formation + Delta-G solvation = 45.095517 kcal Electronic energy + Delta-G solvation = -29751.659710 eV Core-core repulsion = 25899.847427 eV Total energy + Delta-G solvation = -3851.812283 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.55183 -40.30951 -39.40087 -38.52223 -37.32884 -35.66891 -34.13515 -33.19148 -32.09213 -30.55430 -29.59702 -27.80608 -27.63654 -24.78880 -23.84967 -23.23613 -23.06555 -22.62325 -21.43920 -20.78477 -20.65846 -19.62213 -18.75051 -17.95422 -17.15021 -16.90432 -16.72404 -16.39533 -16.14253 -15.75361 -15.54370 -15.26565 -15.02060 -14.90557 -14.83688 -14.68246 -14.42750 -14.17172 -13.97366 -13.43372 -13.26960 -12.99146 -12.82976 -12.79227 -12.64612 -12.52790 -12.43568 -12.30445 -12.25967 -12.06865 -11.85186 -11.48583 -11.34008 -11.00822 -10.95418 -10.71649 -10.63375 -10.56906 -10.01011 -9.16740 -8.92690 -8.80205 -6.58729 -0.24733 -0.08219 1.03803 1.15585 1.20091 1.39652 1.89936 1.97559 2.20619 2.64165 2.94074 3.06674 3.14446 3.23990 3.61085 3.75090 3.83277 3.85612 3.91958 4.06877 4.15516 4.21428 4.25010 4.39161 4.40471 4.42428 4.50446 4.51872 4.61426 4.66448 4.78889 4.82998 4.89260 4.90676 5.05594 5.07102 5.13928 5.17361 5.19344 5.23055 5.30863 5.36471 5.39932 5.48965 5.50308 5.54059 5.58266 5.90617 6.06930 6.09911 6.20614 6.36259 6.68765 7.21057 7.29997 8.19966 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010943 B = 0.004066 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2558.041908 B = 6883.967196 C = 8899.518313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.085 3.915 3 Si 0.945 3.055 4 H -0.264 1.264 5 H -0.282 1.282 6 H -0.292 1.292 7 C -0.397 4.397 8 H 0.110 0.890 9 N -0.383 5.383 10 C 0.489 3.511 11 O -0.571 6.571 12 C -0.240 4.240 13 C -0.069 4.069 14 C -0.143 4.143 15 C -0.067 4.067 16 C -0.119 4.119 17 C 0.137 3.863 18 N -0.514 5.514 19 C 0.356 3.644 20 C 0.127 3.873 21 N -0.515 5.515 22 C 0.061 3.939 23 C -0.129 4.129 24 C -0.052 4.052 25 H 0.087 0.913 26 C -0.150 4.150 27 C -0.171 4.171 28 C -0.181 4.181 29 C 0.048 3.952 30 H 0.289 0.711 31 H 0.115 0.885 32 H 0.161 0.839 33 H 0.176 0.824 34 H 0.155 0.845 35 H 0.060 0.940 36 H 0.103 0.897 37 H 0.078 0.922 38 H 0.027 0.973 39 H 0.088 0.912 40 H 0.065 0.935 41 H 0.101 0.899 42 H 0.098 0.902 43 H 0.100 0.900 44 H 0.097 0.903 45 H 0.095 0.905 46 H 0.047 0.953 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.829 -10.820 -5.962 20.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.129 4.129 3 Si 0.772 3.228 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.219 1.219 7 C -0.523 4.523 8 H 0.128 0.872 9 N -0.089 5.089 10 C 0.287 3.713 11 O -0.454 6.454 12 C -0.247 4.247 13 C -0.089 4.089 14 C -0.161 4.161 15 C -0.086 4.086 16 C -0.138 4.138 17 C 0.023 3.977 18 N -0.238 5.238 19 C 0.093 3.907 20 C -0.003 4.003 21 N -0.239 5.239 22 C -0.066 4.066 23 C -0.167 4.167 24 C -0.071 4.071 25 H 0.105 0.895 26 C -0.168 4.168 27 C -0.208 4.208 28 C -0.218 4.218 29 C -0.079 4.079 30 H 0.099 0.901 31 H 0.133 0.867 32 H 0.179 0.821 33 H 0.193 0.807 34 H 0.173 0.827 35 H 0.078 0.922 36 H 0.121 0.879 37 H 0.097 0.903 38 H 0.046 0.954 39 H 0.106 0.894 40 H 0.084 0.916 41 H 0.120 0.880 42 H 0.116 0.884 43 H 0.119 0.881 44 H 0.116 0.884 45 H 0.113 0.887 46 H 0.065 0.935 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 16.090 -10.375 -5.930 20.043 hybrid contribution -2.090 1.101 0.760 2.481 sum 14.001 -9.274 -5.170 17.572 Atomic orbital electron populations 1.69769 1.07699 1.30299 1.39654 1.25639 0.95148 1.01300 0.90791 0.85721 0.79358 0.80441 0.77231 1.19050 1.20770 1.21858 1.19093 0.90543 0.98596 1.44080 0.87238 1.42530 1.11289 1.37643 1.17479 1.19058 0.89322 0.82456 0.80430 1.90531 1.49869 1.43819 1.61162 1.20930 0.93348 1.08358 1.02028 1.21083 0.97968 0.96520 0.93323 1.21426 0.91537 1.01257 1.01927 1.21660 1.00881 0.93256 0.92827 1.21071 0.93001 1.02203 0.97554 1.19381 0.95030 0.92622 0.90706 1.68615 1.13016 1.28101 1.14085 1.23449 0.83274 0.90462 0.93549 1.20892 0.91860 0.97107 0.90416 1.63319 1.33391 1.24699 1.02530 1.22656 1.01249 0.88236 0.94503 1.22840 1.02531 0.97001 0.94347 1.21749 0.99549 0.92526 0.93320 0.89488 1.22176 1.01287 1.02318 0.91035 1.23061 0.97276 0.97343 1.03144 1.23000 1.03243 0.99555 0.96021 1.23119 0.99224 0.96175 0.89386 0.90105 0.86696 0.82104 0.80706 0.82704 0.92191 0.87890 0.90329 0.95422 0.89362 0.91600 0.88038 0.88355 0.88136 0.88440 0.88680 0.93454 0.89903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -48.65 13.95 21.68 0.30 -48.34 16 2 C 0.09 4.85 4.62 84.98 0.39 5.24 16 3 Si 0.95 49.25 25.84 68.60 1.77 51.03 16 4 H -0.26 -12.52 7.11 99.48 0.71 -11.82 16 5 H -0.28 -14.78 7.11 99.48 0.71 -14.07 16 6 H -0.29 -16.23 5.64 99.48 0.56 -15.67 16 7 C -0.40 -21.80 8.63 84.07 0.73 -21.07 16 8 H 0.11 5.97 7.21 -2.91 -0.02 5.95 16 9 N -0.38 -19.81 2.31 -460.23 -1.06 -20.87 16 10 C 0.49 26.49 5.27 86.44 0.46 26.95 16 11 O -0.57 -34.28 13.11 -4.43 -0.06 -34.34 16 12 C -0.24 -10.99 5.89 -19.96 -0.12 -11.11 16 13 C -0.07 -2.67 9.68 22.44 0.22 -2.45 16 14 C -0.14 -3.92 10.02 22.32 0.22 -3.70 16 15 C -0.07 -1.59 10.00 22.30 0.22 -1.37 16 16 C -0.12 -3.55 10.03 22.48 0.23 -3.32 16 17 C 0.14 5.51 6.63 39.65 0.26 5.77 16 18 N -0.51 -21.00 8.34 -179.53 -1.50 -22.50 16 19 C 0.36 15.63 7.13 137.94 0.98 16.61 16 20 C 0.13 4.62 3.66 85.56 0.31 4.93 16 21 N -0.52 -15.46 4.76 -890.08 -4.24 -19.70 16 22 C 0.06 1.68 5.47 86.65 0.47 2.16 16 23 C -0.13 -2.63 6.41 31.78 0.20 -2.42 16 24 C -0.05 -1.00 3.17 -9.41 -0.03 -1.03 16 25 H 0.09 1.62 8.00 -2.39 -0.02 1.61 16 26 C -0.15 -2.44 5.17 -10.79 -0.06 -2.49 16 27 C -0.17 -2.31 10.20 30.62 0.31 -2.00 16 28 C -0.18 -2.68 10.11 30.62 0.31 -2.38 16 29 C 0.05 1.14 6.02 86.77 0.52 1.66 16 30 H 0.29 15.47 8.31 -92.71 -0.77 14.70 16 31 H 0.11 4.57 7.83 -2.91 -0.02 4.55 16 32 H 0.16 3.10 8.06 -2.91 -0.02 3.08 16 33 H 0.18 2.42 8.06 -2.91 -0.02 2.40 16 34 H 0.16 3.81 8.06 -2.91 -0.02 3.78 16 35 H 0.06 2.19 7.40 -2.39 -0.02 2.17 16 36 H 0.10 3.77 7.97 -2.39 -0.02 3.75 16 37 H 0.08 2.22 8.10 -2.39 -0.02 2.20 16 38 H 0.03 0.87 7.31 -2.39 -0.02 0.85 16 39 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.07 1.34 7.93 -2.39 -0.02 1.32 16 41 H 0.10 1.69 7.99 -2.39 -0.02 1.68 16 42 H 0.10 1.25 8.10 -2.39 -0.02 1.23 16 43 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.05 1.14 7.71 -2.38 -0.02 1.12 16 47 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -70.36 375.01 1.68 -68.68 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: 0.82 Total: 16.07 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: 5.64 Total: 9.98 kcal Atomic # 7 Polarization: -104.91 SS G_CDS: -6.50 Total: -111.41 kcal Atomic # 8 Polarization: -34.28 SS G_CDS: -0.06 Total: -34.34 kcal Atomic # 14 Polarization: 49.25 SS G_CDS: 1.77 Total: 51.03 kcal Total: -70.36 1.68 -68.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764486443.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.771 kcal (2) G-P(sol) polarization free energy of solvation -70.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds