Wall clock time and date at job start Sat Apr 11 2020 05:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86799 * 119.99831 * 2 1 4 4 H 1.48493 * 109.46882 * 269.99777 * 3 2 1 5 5 H 1.48499 * 109.46877 * 29.99534 * 3 2 1 6 6 H 1.48492 * 109.47172 * 149.99610 * 3 2 1 7 7 C 1.38811 * 120.00236 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00212 * 163.07313 * 7 2 1 9 9 N 1.36940 * 119.99753 * 343.08516 * 7 2 1 10 10 C 1.46921 * 120.63223 * 331.83629 * 9 7 2 11 11 C 1.53195 * 108.77835 * 233.59284 * 10 9 7 12 12 C 1.53033 * 109.31324 * 305.36567 * 11 10 9 13 13 N 1.46500 * 109.46223 * 181.38288 * 12 11 10 14 14 C 1.34779 * 120.00253 * 154.99886 * 13 12 11 15 15 O 1.21721 * 119.99346 * 359.97438 * 14 13 12 16 16 C 1.46277 * 120.00367 * 180.02562 * 14 13 12 17 17 C 1.34935 * 120.00513 * 180.02562 * 16 14 13 18 18 C 1.47056 * 120.00168 * 180.02562 * 17 16 14 19 19 C 1.40419 * 120.00311 * 359.97438 * 18 17 16 20 20 C 1.36274 * 120.64432 * 180.02562 * 19 18 17 21 21 C 1.39402 * 120.27548 * 359.97438 * 20 19 18 22 22 N 1.37461 * 133.21401 * 179.97438 * 21 20 19 23 23 H 0.96995 * 125.01335 * 0.02562 * 22 21 20 24 24 C 1.36858 * 109.97364 * 180.02562 * 22 21 20 25 25 C 1.34198 * 109.96567 * 0.26792 * 24 22 21 26 26 C 1.40887 * 119.68369 * 0.02562 * 21 20 19 27 27 C 1.39247 * 120.02793 * 359.97438 * 26 21 20 28 28 C 1.53039 * 109.53662 * 61.36300 * 12 11 10 29 29 C 1.46925 * 120.62924 * 151.82269 * 9 7 2 30 30 H 0.96996 * 119.99780 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.58922 * 113.80642 * 10 9 7 32 32 H 1.09001 * 109.70755 * 353.45068 * 10 9 7 33 33 H 1.09004 * 109.49618 * 185.41389 * 11 10 9 34 34 H 1.08998 * 109.52258 * 65.33575 * 11 10 9 35 35 H 1.09008 * 109.46180 * 301.35796 * 12 11 10 36 36 H 0.96996 * 120.00041 * 335.00720 * 13 12 11 37 37 H 1.08007 * 119.99711 * 0.02562 * 16 14 13 38 38 H 1.08004 * 119.99259 * 0.02562 * 17 16 14 39 39 H 1.07998 * 119.67781 * 0.02562 * 19 18 17 40 40 H 1.08000 * 119.85988 * 180.02562 * 20 19 18 41 41 H 1.07993 * 125.01857 * 179.97438 * 24 22 21 42 42 H 1.07995 * 126.53620 * 179.69993 * 25 24 22 43 43 H 1.08001 * 120.31710 * 179.97438 * 27 26 21 44 44 H 1.08999 * 109.49910 * 58.58942 * 28 12 11 45 45 H 1.09002 * 109.49686 * 178.68360 * 28 12 11 46 46 H 1.08995 * 109.58622 * 246.19429 * 29 9 7 47 47 H 1.08997 * 109.58811 * 6.47775 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0463 -1.4000 5 1 1.4475 2.6526 0.6999 6 1 3.5477 1.4403 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 3.0552 -1.2225 -0.2718 9 7 1.3701 -2.3622 0.3461 10 6 0.2261 -2.3400 1.2677 11 6 0.4974 -3.3191 2.4143 12 6 0.8120 -4.7007 1.8362 13 7 1.0396 -5.6475 2.9308 14 6 0.8362 -6.9654 2.7351 15 8 0.4630 -7.3689 1.6491 16 6 1.0629 -7.9107 3.8282 17 6 0.8598 -9.2302 3.6322 18 6 1.0872 -10.1804 4.7312 19 6 1.5162 -9.7147 5.9846 20 6 1.7314 -10.5837 7.0120 21 6 1.5271 -11.9507 6.8307 22 7 1.6584 -13.0400 7.6589 23 1 1.9424 -13.0035 8.5856 24 6 1.3294 -14.1836 6.9828 25 6 0.9864 -13.8867 5.7199 26 6 1.0967 -12.4318 5.5784 27 6 0.8769 -11.5436 4.5288 28 6 2.0674 -4.6172 0.9650 29 6 1.8139 -3.6528 -0.1980 30 1 -0.4849 0.8400 -0.0004 31 1 -0.6770 -2.6406 0.7365 32 1 0.0966 -1.3347 1.6687 33 1 -0.3833 -3.3840 3.0533 34 1 1.3468 -2.9678 3.0000 35 1 -0.0281 -5.0409 1.2306 36 1 1.3365 -5.3259 3.7964 37 1 1.3929 -7.5525 4.7922 38 1 0.5303 -9.5884 2.6680 39 1 1.6772 -8.6576 6.1358 40 1 2.0609 -10.2117 7.9708 41 1 1.3480 -15.1785 7.4023 42 1 0.6850 -14.5861 4.9542 43 1 0.5474 -11.9074 3.5668 44 1 2.9024 -4.2534 1.5639 45 1 2.3043 -5.6062 0.5726 46 1 1.0404 -4.0605 -0.8487 47 1 2.7333 -3.5130 -0.7665 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000765789092.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:42 Heat of formation + Delta-G solvation = 35.135375 kcal Electronic energy + Delta-G solvation = -27303.654783 eV Core-core repulsion = 23451.410596 eV Total energy + Delta-G solvation = -3852.244187 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.09884 -40.92293 -39.04385 -38.27916 -35.98110 -34.23040 -33.82475 -32.94166 -31.82040 -31.24521 -29.90105 -29.40320 -27.04054 -25.09406 -23.92167 -23.61726 -23.38945 -21.98007 -21.47146 -21.09773 -20.09557 -19.01895 -18.78672 -18.19910 -17.30073 -16.85900 -16.60629 -16.13043 -15.88553 -15.56392 -15.39703 -15.35939 -15.24848 -14.88126 -14.74240 -14.62282 -14.26373 -14.09829 -14.03243 -13.55429 -13.22130 -13.04344 -13.02048 -12.96861 -12.77873 -12.60484 -12.51008 -12.22537 -12.01752 -11.87085 -11.72615 -11.55156 -11.35335 -10.93822 -10.89537 -10.61960 -10.55088 -9.97170 -8.94168 -8.70194 -8.54351 -7.87229 -5.33084 -0.34157 0.29130 1.13012 1.49110 1.50019 1.60416 1.84508 2.26998 2.30172 2.38437 2.52784 3.02550 3.28804 3.63100 3.68391 3.76196 3.90282 3.98463 4.05743 4.15894 4.23169 4.33386 4.34843 4.40010 4.46941 4.49364 4.65335 4.69532 4.82505 4.85048 4.86470 5.02329 5.03102 5.06121 5.10344 5.16026 5.20729 5.28760 5.31356 5.47147 5.51612 5.60371 5.65160 5.71307 5.71739 5.76510 5.79921 6.17070 6.39370 6.69221 6.71910 7.14892 7.34677 7.84229 8.37703 9.19993 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.037998 B = 0.001603 C = 0.001576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.704461 B =17465.526161 C =17766.673396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.049 4.049 3 Si 0.970 3.030 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.269 1.269 7 C -0.265 4.265 8 H 0.067 0.933 9 N -0.608 5.608 10 C 0.178 3.822 11 C -0.128 4.128 12 C 0.161 3.839 13 N -0.706 5.706 14 C 0.539 3.461 15 O -0.597 6.597 16 C -0.219 4.219 17 C -0.008 4.008 18 C -0.116 4.116 19 C -0.086 4.086 20 C -0.131 4.131 21 C 0.089 3.911 22 N -0.586 5.586 23 H 0.431 0.569 24 C 0.063 3.937 25 C -0.230 4.230 26 C -0.143 4.143 27 C -0.055 4.055 28 C -0.123 4.123 29 C 0.144 3.856 30 H 0.251 0.749 31 H -0.007 1.007 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.055 0.945 36 H 0.415 0.585 37 H 0.161 0.839 38 H 0.118 0.882 39 H 0.150 0.850 40 H 0.148 0.852 41 H 0.210 0.790 42 H 0.158 0.842 43 H 0.131 0.869 44 H 0.067 0.933 45 H 0.057 0.943 46 H 0.006 0.994 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.289 -28.256 21.869 35.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.245 4.245 3 Si 0.798 3.202 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.193 1.193 7 C -0.395 4.395 8 H 0.085 0.915 9 N -0.332 5.332 10 C 0.052 3.948 11 C -0.167 4.167 12 C 0.056 3.944 13 N -0.356 5.356 14 C 0.331 3.669 15 O -0.480 6.480 16 C -0.239 4.239 17 C -0.028 4.028 18 C -0.117 4.117 19 C -0.105 4.105 20 C -0.152 4.152 21 C -0.020 4.020 22 N -0.190 5.190 23 H 0.271 0.729 24 C -0.063 4.063 25 C -0.254 4.254 26 C -0.148 4.148 27 C -0.074 4.074 28 C -0.163 4.163 29 C 0.018 3.982 30 H 0.060 0.940 31 H 0.011 0.989 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.252 0.748 37 H 0.179 0.821 38 H 0.136 0.864 39 H 0.168 0.832 40 H 0.166 0.834 41 H 0.227 0.773 42 H 0.175 0.825 43 H 0.149 0.851 44 H 0.086 0.914 45 H 0.076 0.924 46 H 0.024 0.976 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.976 -28.419 21.255 35.710 hybrid contribution 0.202 1.214 -0.009 1.231 sum 4.177 -27.205 21.246 34.770 Atomic orbital electron populations 1.70192 1.06730 1.25968 1.55278 1.25831 0.96044 1.01565 1.01039 0.85244 0.78116 0.79352 0.77509 1.21356 1.21717 1.19346 1.19525 0.92898 0.85862 1.41242 0.91484 1.44335 1.35945 1.02145 1.50754 1.20566 0.87677 0.97782 0.88775 1.22251 1.02010 0.93584 0.98895 1.20636 0.97080 0.88517 0.88153 1.45931 1.68153 1.05902 1.15622 1.18888 0.76519 0.83120 0.88420 1.90791 1.49319 1.79247 1.28687 1.22857 1.08553 0.93138 0.99355 1.22292 0.90707 0.92633 0.97138 1.18753 1.06136 0.92605 0.94249 1.21029 0.97609 1.00739 0.91169 1.19983 1.05172 0.88991 1.01020 1.18686 1.02240 0.89959 0.91145 1.41893 1.58793 1.04441 1.13829 0.72923 1.22458 0.99761 0.91842 0.92266 1.22059 1.12261 0.92628 0.98490 1.19520 1.06356 0.94989 0.93892 1.20970 0.96728 0.91468 0.98237 1.22164 0.97835 0.98539 0.97791 1.20966 0.97333 0.86032 0.93879 0.94007 0.98890 0.91760 0.90498 0.90958 0.92720 0.74811 0.82146 0.86369 0.83205 0.83431 0.77322 0.82484 0.85097 0.91391 0.92407 0.97647 0.92354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.72 11.19 21.65 0.24 -55.48 16 2 C -0.05 -2.77 4.92 84.86 0.42 -2.36 16 3 Si 0.97 44.82 29.59 68.60 2.03 46.85 16 4 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 5 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.27 -14.77 9.58 84.03 0.81 -13.97 16 8 H 0.07 3.63 7.88 -2.91 -0.02 3.61 16 9 N -0.61 -31.37 2.99 -699.10 -2.09 -33.46 16 10 C 0.18 8.69 5.30 86.36 0.46 9.15 16 11 C -0.13 -4.66 5.55 30.67 0.17 -4.49 16 12 C 0.16 5.72 2.42 45.02 0.11 5.83 16 13 N -0.71 -19.49 5.07 -446.76 -2.27 -21.76 16 14 C 0.54 16.16 7.70 86.33 0.66 16.82 16 15 O -0.60 -23.49 15.89 -4.42 -0.07 -23.56 16 16 C -0.22 -4.69 9.40 23.60 0.22 -4.47 16 17 C -0.01 -0.17 9.45 23.82 0.23 0.06 16 18 C -0.12 -2.23 5.87 -20.15 -0.12 -2.34 16 19 C -0.09 -1.31 9.33 22.34 0.21 -1.10 16 20 C -0.13 -1.74 10.00 22.09 0.22 -1.51 16 21 C 0.09 1.32 7.27 39.19 0.28 1.60 16 22 N -0.59 -4.95 6.05 -187.40 -1.13 -6.08 16 23 H 0.43 0.81 8.96 -92.71 -0.83 -0.02 16 24 C 0.06 0.48 11.81 82.99 0.98 1.46 16 25 C -0.23 -3.01 11.09 23.53 0.26 -2.75 16 26 C -0.14 -2.56 6.36 -20.21 -0.13 -2.69 16 27 C -0.06 -1.07 9.85 22.80 0.22 -0.84 16 28 C -0.12 -4.60 5.65 30.67 0.17 -4.42 16 29 C 0.14 6.46 6.52 86.36 0.56 7.02 16 30 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 31 H -0.01 -0.37 8.14 -2.38 -0.02 -0.39 16 32 H 0.06 3.48 6.07 -2.39 -0.01 3.46 16 33 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 35 H 0.05 2.27 7.58 -2.38 -0.02 2.25 16 36 H 0.41 8.38 8.58 -92.71 -0.80 7.59 16 37 H 0.16 2.22 6.05 -2.91 -0.02 2.20 16 38 H 0.12 2.93 7.52 -2.91 -0.02 2.90 16 39 H 0.15 1.58 6.13 -2.91 -0.02 1.56 16 40 H 0.15 1.09 8.06 -2.91 -0.02 1.07 16 41 H 0.21 -0.19 8.06 -2.91 -0.02 -0.22 16 42 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16 43 H 0.13 2.26 8.06 -2.91 -0.02 2.23 16 44 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 45 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 46 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 47 H 0.06 2.53 7.93 -2.39 -0.02 2.51 16 Total: -1.00 -76.94 386.26 1.83 -75.11 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -0.62 Total: 17.38 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: 5.74 Total: 1.00 kcal Atomic # 7 Polarization: -111.52 SS G_CDS: -5.25 Total: -116.77 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: -0.07 Total: -23.56 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -76.94 1.83 -75.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765789092.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.243 kcal (2) G-P(sol) polarization free energy of solvation -76.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds