Wall clock time and date at job start Sat Apr 11 2020 05:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34755 * 116.99871 * 2 1 4 4 O 1.21467 * 120.00006 * 0.02562 * 3 2 1 5 5 C 1.47474 * 119.99805 * 179.97438 * 3 2 1 6 6 N 1.29140 * 125.86618 * 359.70096 * 5 3 2 7 7 O 1.41583 * 112.87927 * 180.10131 * 6 5 3 8 8 C 1.43422 * 107.49862 * 343.66455 * 7 6 5 9 9 C 1.51848 * 125.86471 * 179.97438 * 5 3 2 10 10 C 1.52269 * 110.96870 * 142.40305 * 8 7 6 11 11 C 1.53186 * 109.36741 * 68.11111 * 10 8 7 12 12 N 1.46855 * 109.42601 * 57.89292 * 11 10 8 13 13 C 1.46906 * 110.99931 * 173.48803 * 12 11 10 14 14 C 1.50699 * 109.47232 * 294.38908 * 13 12 11 15 15 O 1.21285 * 119.99776 * 359.97438 * 14 13 12 16 16 N 1.34770 * 120.00039 * 179.97438 * 14 13 12 17 17 C 1.46498 * 120.00021 * 180.02562 * 16 14 13 18 18 C 1.50702 * 109.47214 * 180.02562 * 17 16 14 19 19 H 1.08000 * 119.99680 * 359.97438 * 18 17 16 20 20 C 1.37873 * 120.00108 * 179.97438 * 18 17 16 21 21 N 1.31522 * 119.99924 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00164 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47146 * 60.00121 * 22 20 18 24 24 H 1.48500 * 109.47255 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.46994 * 300.00037 * 22 20 18 26 26 C 1.46856 * 111.33766 * 297.68608 * 12 11 10 27 27 C 1.52281 * 110.94789 * 266.28626 * 8 7 6 28 28 H 1.09001 * 109.47157 * 59.99750 * 1 2 3 29 29 H 1.09004 * 109.47122 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47070 * 299.99909 * 1 2 3 31 31 H 1.08998 * 110.82580 * 313.01807 * 9 5 3 32 32 H 1.09000 * 110.81874 * 76.37359 * 9 5 3 33 33 H 1.08999 * 109.48889 * 188.07795 * 10 8 7 34 34 H 1.09006 * 109.48826 * 308.14275 * 10 8 7 35 35 H 1.09002 * 109.47522 * 297.91265 * 11 10 8 36 36 H 1.08997 * 109.48854 * 177.88829 * 11 10 8 37 37 H 1.09003 * 109.46831 * 54.38930 * 13 12 11 38 38 H 1.08994 * 109.47131 * 174.38955 * 13 12 11 39 39 H 0.96994 * 119.99970 * 359.97438 * 16 14 13 40 40 H 1.09003 * 109.46904 * 299.99485 * 17 16 14 41 41 H 1.08998 * 109.47708 * 59.99363 * 17 16 14 42 42 H 0.96999 * 119.99682 * 179.97438 * 21 20 18 43 43 H 1.09001 * 109.48541 * 302.35066 * 26 12 11 44 44 H 1.09002 * 109.49402 * 182.31943 * 26 12 11 45 45 H 1.08992 * 109.48863 * 51.86222 * 27 8 7 46 46 H 1.09002 * 109.48492 * 171.90949 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4022 2.2194 0.0005 5 6 3.5365 1.2779 0.0006 6 7 4.3469 0.2724 0.0066 7 8 5.7079 0.6623 0.0077 8 6 5.7618 2.0413 -0.3829 9 6 4.3606 2.5533 0.0001 10 6 6.8356 2.7871 0.3977 11 6 8.2171 2.2790 -0.0262 12 7 8.3836 2.4664 -1.4732 13 6 9.7517 2.1343 -1.8931 14 6 10.7173 3.1165 -1.2815 15 8 10.3062 4.0059 -0.5667 16 7 12.0375 3.0066 -1.5289 17 6 12.9762 3.9611 -0.9339 18 6 14.3796 3.6205 -1.3647 19 1 14.5547 2.7771 -2.0162 20 6 15.4399 4.3855 -0.9272 21 7 15.2265 5.4129 -0.1343 22 14 17.1795 3.9629 -1.4606 23 1 17.2739 4.0322 -2.9409 24 1 18.1310 4.9305 -0.8576 25 1 17.5166 2.5897 -1.0068 26 6 7.3967 1.6858 -2.2303 27 6 5.9867 2.1738 -1.8832 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.9874 3.2555 -0.7454 32 1 4.3688 3.0096 0.9900 33 1 6.7611 3.8545 0.1895 34 1 6.6960 2.6138 1.4648 35 1 8.3046 1.2197 0.2154 36 1 8.9884 2.8376 0.5039 37 1 9.9992 1.1263 -1.5603 38 1 9.8208 2.1855 -2.9796 39 1 12.3662 2.2951 -2.1003 40 1 12.7290 4.9692 -1.2667 41 1 12.9067 3.9099 0.1526 42 1 15.9725 5.9509 0.1738 43 1 7.4905 0.6313 -1.9706 44 1 7.5731 1.8142 -3.2982 45 1 5.2516 1.5706 -2.4157 46 1 5.8808 3.2185 -2.1758 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771779220.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:56 Heat of formation + Delta-G solvation = -85.251049 kcal Electronic energy + Delta-G solvation = -29173.223661 eV Core-core repulsion = 24872.617113 eV Total energy + Delta-G solvation = -4300.606549 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.60254 -40.68570 -39.18069 -37.46523 -37.12424 -34.21064 -33.82030 -33.27062 -32.31581 -31.14066 -29.39167 -28.55059 -27.48874 -25.72226 -24.83331 -23.61025 -22.75871 -21.95947 -21.11568 -19.92090 -19.64555 -17.96998 -17.32828 -17.14796 -17.07678 -16.44316 -16.17055 -15.73304 -15.66641 -15.30957 -15.00135 -14.68482 -14.54050 -14.32763 -14.07297 -14.02369 -13.74864 -13.40897 -13.10063 -12.93597 -12.73544 -12.67671 -12.42834 -12.07976 -11.98133 -11.87074 -11.56182 -11.44102 -11.41501 -11.38192 -11.26183 -11.05492 -10.96832 -10.87499 -10.67566 -10.30734 -9.94399 -9.40962 -9.00275 -8.72490 -8.22955 -7.85040 -6.16536 -4.23542 0.22164 1.62113 2.13028 2.57560 3.25265 3.30151 3.31463 3.38570 3.58898 3.75285 3.85433 3.92662 4.20499 4.25864 4.43164 4.50369 4.53007 4.63491 4.74651 4.90736 4.97451 5.02848 5.08941 5.19452 5.20671 5.24552 5.35809 5.39391 5.46614 5.52005 5.55973 5.60217 5.64184 5.71070 5.79903 6.06189 6.15814 6.53093 6.95203 6.99359 7.09873 7.32567 7.45458 7.52447 7.67624 7.97484 8.64046 8.79053 9.12673 9.43280 10.93534 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.045677 B = 0.001732 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.847692 B =16161.948278 C =16356.219664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.340 6.340 3 C 0.545 3.455 4 O -0.479 6.479 5 C 0.048 3.952 6 N -0.208 5.208 7 O -0.160 6.160 8 C 0.070 3.930 9 C -0.120 4.120 10 C -0.099 4.099 11 C 0.051 3.949 12 N -0.520 5.520 13 C 0.036 3.964 14 C 0.499 3.501 15 O -0.540 6.540 16 N -0.715 5.715 17 C 0.252 3.748 18 C -0.545 4.545 19 H 0.062 0.938 20 C 0.064 3.936 21 N -0.885 5.885 22 Si 0.904 3.096 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.275 1.275 26 C 0.058 3.942 27 C -0.121 4.121 28 H 0.069 0.931 29 H 0.109 0.891 30 H 0.069 0.931 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.034 0.966 36 H 0.107 0.893 37 H 0.059 0.941 38 H 0.099 0.901 39 H 0.390 0.610 40 H 0.027 0.973 41 H 0.026 0.974 42 H 0.266 0.734 43 H 0.041 0.959 44 H 0.080 0.920 45 H 0.070 0.930 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.654 -10.933 -2.206 29.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.255 6.255 3 C 0.385 3.615 4 O -0.362 6.362 5 C -0.144 4.144 6 N 0.049 4.951 7 O -0.186 6.186 8 C 0.030 3.970 9 C -0.159 4.159 10 C -0.138 4.138 11 C -0.077 4.077 12 N -0.245 5.245 13 C -0.095 4.095 14 C 0.283 3.717 15 O -0.418 6.418 16 N -0.364 5.364 17 C 0.131 3.869 18 C -0.583 4.583 19 H 0.080 0.920 20 C -0.140 4.140 21 N -0.523 5.523 22 Si 0.731 3.269 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.201 1.201 26 C -0.070 4.070 27 C -0.159 4.159 28 H 0.087 0.913 29 H 0.127 0.873 30 H 0.087 0.913 31 H 0.133 0.867 32 H 0.132 0.868 33 H 0.116 0.884 34 H 0.098 0.902 35 H 0.052 0.948 36 H 0.125 0.875 37 H 0.077 0.923 38 H 0.117 0.883 39 H 0.222 0.778 40 H 0.045 0.955 41 H 0.044 0.956 42 H 0.076 0.924 43 H 0.059 0.941 44 H 0.099 0.901 45 H 0.089 0.911 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -27.956 -10.511 -1.619 29.911 hybrid contribution 1.076 -0.481 -0.450 1.262 sum -26.880 -10.991 -2.069 29.114 Atomic orbital electron populations 1.23455 0.74730 1.04552 1.03101 1.86665 1.24350 1.31167 1.83343 1.19584 0.85988 0.82298 0.73605 1.90924 1.65277 1.35921 1.44090 1.24812 0.92082 0.95602 1.01913 1.78594 0.90635 1.22553 1.03300 1.91269 1.14039 1.26961 1.86319 1.22747 0.95159 0.82156 0.96899 1.22912 0.90735 0.95872 1.06416 1.21581 0.92517 1.00635 0.99031 1.22270 0.97747 0.99396 0.88246 1.61536 1.01853 1.56047 1.05025 1.21985 0.88684 0.97330 1.01488 1.20283 0.83309 0.85977 0.82131 1.90617 1.77837 1.35013 1.38316 1.46455 1.06210 1.33331 1.50371 1.19075 0.85985 0.87914 0.93929 1.21200 0.91062 1.14569 1.31460 0.91974 1.24947 0.99555 0.94711 0.94758 1.69967 1.32165 1.17212 1.32922 0.86477 0.83314 0.78242 0.78877 1.20074 1.21074 1.20096 1.22041 0.90874 0.95475 0.98597 1.21864 0.97488 1.03699 0.92850 0.91268 0.87299 0.91259 0.86656 0.86759 0.88424 0.90231 0.94755 0.87528 0.92321 0.88278 0.77819 0.95528 0.95624 0.92406 0.94102 0.90142 0.91098 0.88807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.57 101.05 1.07 1.23 16 2 O -0.34 -2.83 10.56 -40.64 -0.43 -3.26 16 3 C 0.54 5.06 7.96 34.49 0.27 5.34 16 4 O -0.48 -5.05 16.75 -19.24 -0.32 -5.37 16 5 C 0.05 0.46 7.31 -79.40 -0.58 -0.12 16 6 N -0.21 -2.35 12.53 35.31 0.44 -1.91 16 7 O -0.16 -1.91 11.46 -11.46 -0.13 -2.04 16 8 C 0.07 0.69 0.77 -90.83 -0.07 0.63 16 9 C -0.12 -0.98 5.97 -26.78 -0.16 -1.14 16 10 C -0.10 -1.08 5.06 -27.01 -0.14 -1.22 16 11 C 0.05 0.69 5.04 -3.75 -0.02 0.67 16 12 N -0.52 -6.99 4.38 -235.90 -1.03 -8.02 16 13 C 0.04 0.50 5.45 -4.97 -0.03 0.48 16 14 C 0.50 9.58 7.50 -10.99 -0.08 9.49 16 15 O -0.54 -12.37 14.32 5.55 0.08 -12.29 16 16 N -0.71 -14.64 5.55 -61.47 -0.34 -14.99 16 17 C 0.25 6.58 5.43 -5.19 -0.03 6.55 16 18 C -0.54 -14.65 9.28 -34.44 -0.32 -14.97 16 19 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 20 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 21 N -0.89 -25.93 13.29 55.43 0.74 -25.19 16 22 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 23 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 26 C 0.06 0.62 5.40 -3.75 -0.02 0.60 16 27 C -0.12 -1.13 5.05 -27.00 -0.14 -1.26 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.11 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.12 0.78 7.87 -51.93 -0.41 0.37 16 32 H 0.11 0.80 7.89 -51.93 -0.41 0.39 16 33 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.03 0.46 8.02 -51.93 -0.42 0.05 16 36 H 0.11 1.77 5.76 -51.93 -0.30 1.48 16 37 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 38 H 0.10 1.17 7.98 -51.93 -0.41 0.75 16 39 H 0.39 6.81 8.32 -40.82 -0.34 6.47 16 40 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.04 0.45 8.02 -51.93 -0.42 0.04 16 44 H 0.08 0.75 8.00 -51.93 -0.42 0.34 16 45 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 385.08 15.07 5.80 5.80 Total: -1.00 -33.76 385.08 -7.43 -41.19 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -6.88 Total: 2.44 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: -0.33 Total: 7.94 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: -0.20 Total: -50.11 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.80 Total: -22.97 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.76 -7.43 -41.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771779220.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.060 kcal (2) G-P(sol) polarization free energy of solvation -33.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds