Wall clock time and date at job start Sat Apr 11 2020 05:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34755 * 116.99871 * 2 1 4 4 O 1.21467 * 120.00006 * 0.02562 * 3 2 1 5 5 C 1.47474 * 119.99805 * 179.97438 * 3 2 1 6 6 N 1.29140 * 125.86618 * 359.70096 * 5 3 2 7 7 O 1.41583 * 112.87927 * 180.10131 * 6 5 3 8 8 C 1.43422 * 107.49862 * 343.66455 * 7 6 5 9 9 C 1.51848 * 125.86471 * 179.97438 * 5 3 2 10 10 C 1.52269 * 110.96870 * 142.40305 * 8 7 6 11 11 C 1.53186 * 109.36741 * 68.11111 * 10 8 7 12 12 N 1.46855 * 109.42601 * 57.89292 * 11 10 8 13 13 C 1.46906 * 110.99931 * 173.48803 * 12 11 10 14 14 C 1.50699 * 109.47232 * 294.38908 * 13 12 11 15 15 O 1.21285 * 119.99776 * 359.97438 * 14 13 12 16 16 N 1.34770 * 120.00039 * 179.97438 * 14 13 12 17 17 C 1.46498 * 120.00021 * 180.02562 * 16 14 13 18 18 C 1.50702 * 109.47214 * 180.02562 * 17 16 14 19 19 H 1.08000 * 119.99680 * 359.97438 * 18 17 16 20 20 C 1.37873 * 120.00108 * 179.97438 * 18 17 16 21 21 N 1.31522 * 119.99924 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00164 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47146 * 60.00121 * 22 20 18 24 24 H 1.48500 * 109.47255 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.46994 * 300.00037 * 22 20 18 26 26 C 1.46856 * 111.33766 * 297.68608 * 12 11 10 27 27 C 1.52281 * 110.94789 * 266.28626 * 8 7 6 28 28 H 1.09001 * 109.47157 * 59.99750 * 1 2 3 29 29 H 1.09004 * 109.47122 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47070 * 299.99909 * 1 2 3 31 31 H 1.08998 * 110.82580 * 313.01807 * 9 5 3 32 32 H 1.09000 * 110.81874 * 76.37359 * 9 5 3 33 33 H 1.08999 * 109.48889 * 188.07795 * 10 8 7 34 34 H 1.09006 * 109.48826 * 308.14275 * 10 8 7 35 35 H 1.09002 * 109.47522 * 297.91265 * 11 10 8 36 36 H 1.08997 * 109.48854 * 177.88829 * 11 10 8 37 37 H 1.09003 * 109.46831 * 54.38930 * 13 12 11 38 38 H 1.08994 * 109.47131 * 174.38955 * 13 12 11 39 39 H 0.96994 * 119.99970 * 359.97438 * 16 14 13 40 40 H 1.09003 * 109.46904 * 299.99485 * 17 16 14 41 41 H 1.08998 * 109.47708 * 59.99363 * 17 16 14 42 42 H 0.96999 * 119.99682 * 179.97438 * 21 20 18 43 43 H 1.09001 * 109.48541 * 302.35066 * 26 12 11 44 44 H 1.09002 * 109.49402 * 182.31943 * 26 12 11 45 45 H 1.08992 * 109.48863 * 51.86222 * 27 8 7 46 46 H 1.09002 * 109.48492 * 171.90949 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4022 2.2194 0.0005 5 6 3.5365 1.2779 0.0006 6 7 4.3469 0.2724 0.0066 7 8 5.7079 0.6623 0.0077 8 6 5.7618 2.0413 -0.3829 9 6 4.3606 2.5533 0.0001 10 6 6.8356 2.7871 0.3977 11 6 8.2171 2.2790 -0.0262 12 7 8.3836 2.4664 -1.4732 13 6 9.7517 2.1343 -1.8931 14 6 10.7173 3.1165 -1.2815 15 8 10.3062 4.0059 -0.5667 16 7 12.0375 3.0066 -1.5289 17 6 12.9762 3.9611 -0.9339 18 6 14.3796 3.6205 -1.3647 19 1 14.5547 2.7771 -2.0162 20 6 15.4399 4.3855 -0.9272 21 7 15.2265 5.4129 -0.1343 22 14 17.1795 3.9629 -1.4606 23 1 17.2739 4.0322 -2.9409 24 1 18.1310 4.9305 -0.8576 25 1 17.5166 2.5897 -1.0068 26 6 7.3967 1.6858 -2.2303 27 6 5.9867 2.1738 -1.8832 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.9874 3.2555 -0.7454 32 1 4.3688 3.0096 0.9900 33 1 6.7611 3.8545 0.1895 34 1 6.6960 2.6138 1.4648 35 1 8.3046 1.2197 0.2154 36 1 8.9884 2.8376 0.5039 37 1 9.9992 1.1263 -1.5603 38 1 9.8208 2.1855 -2.9796 39 1 12.3662 2.2951 -2.1003 40 1 12.7290 4.9692 -1.2667 41 1 12.9067 3.9099 0.1526 42 1 15.9725 5.9509 0.1738 43 1 7.4905 0.6313 -1.9706 44 1 7.5731 1.8142 -3.2982 45 1 5.2516 1.5706 -2.4157 46 1 5.8808 3.2185 -2.1758 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771779220.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:55 Heat of formation + Delta-G solvation = -110.749347 kcal Electronic energy + Delta-G solvation = -29174.329351 eV Core-core repulsion = 24872.617113 eV Total energy + Delta-G solvation = -4301.712238 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.36148 -41.41060 -40.60435 -38.60361 -37.79159 -36.07316 -34.73462 -34.32269 -34.09080 -32.01619 -30.55956 -29.19679 -28.93935 -26.98002 -25.55943 -24.54850 -24.41170 -23.09282 -21.86654 -21.31242 -20.68897 -18.91484 -18.64893 -18.07138 -17.79353 -17.46029 -17.31094 -17.12076 -16.68556 -16.51861 -16.43837 -15.95379 -15.69759 -15.30187 -15.21520 -14.83482 -14.61401 -14.41631 -14.23429 -14.08347 -13.90585 -13.79092 -13.65352 -13.17220 -13.09355 -12.93389 -12.88269 -12.70333 -12.55530 -12.27048 -12.23127 -12.21068 -12.03770 -11.96704 -11.91887 -11.65827 -11.48970 -10.77243 -10.73919 -10.56330 -9.76668 -9.27692 -8.27488 -6.43985 -0.51362 0.97540 1.42412 1.44050 1.47900 1.56040 1.83699 1.85561 2.28461 2.47223 2.94579 3.07270 3.09776 3.18036 3.24012 3.48663 3.68986 3.96138 4.07004 4.13412 4.20869 4.22434 4.31300 4.32963 4.35124 4.41527 4.46376 4.50275 4.63007 4.67640 4.69960 4.80181 4.88744 4.96955 5.01584 5.02696 5.13987 5.17098 5.27791 5.51538 5.72987 5.78677 5.87128 5.94164 6.12368 6.32393 6.67275 6.98758 7.25699 7.56813 8.84263 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.045677 B = 0.001732 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.847692 B =16161.948278 C =16356.219664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.350 6.350 3 C 0.549 3.451 4 O -0.493 6.493 5 C 0.060 3.940 6 N -0.230 5.230 7 O -0.181 6.181 8 C 0.071 3.929 9 C -0.118 4.118 10 C -0.095 4.095 11 C 0.054 3.946 12 N -0.533 5.533 13 C 0.049 3.951 14 C 0.495 3.505 15 O -0.581 6.581 16 N -0.711 5.711 17 C 0.269 3.731 18 C -0.558 4.558 19 H 0.083 0.917 20 C 0.004 3.996 21 N -0.930 5.930 22 Si 0.984 3.016 23 H -0.262 1.262 24 H -0.286 1.286 25 H -0.263 1.263 26 C 0.059 3.941 27 C -0.119 4.119 28 H 0.074 0.926 29 H 0.135 0.865 30 H 0.073 0.927 31 H 0.134 0.866 32 H 0.126 0.874 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.032 0.968 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.130 0.870 39 H 0.407 0.593 40 H -0.013 1.013 41 H -0.014 1.014 42 H 0.268 0.732 43 H 0.038 0.962 44 H 0.099 0.901 45 H 0.082 0.918 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.559 -12.603 -4.004 31.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.265 6.265 3 C 0.390 3.610 4 O -0.378 6.378 5 C -0.133 4.133 6 N 0.026 4.974 7 O -0.205 6.205 8 C 0.032 3.968 9 C -0.156 4.156 10 C -0.133 4.133 11 C -0.074 4.074 12 N -0.259 5.259 13 C -0.082 4.082 14 C 0.282 3.718 15 O -0.462 6.462 16 N -0.362 5.362 17 C 0.146 3.854 18 C -0.596 4.596 19 H 0.101 0.899 20 C -0.195 4.195 21 N -0.569 5.569 22 Si 0.807 3.193 23 H -0.186 1.186 24 H -0.212 1.212 25 H -0.188 1.188 26 C -0.068 4.068 27 C -0.157 4.157 28 H 0.093 0.907 29 H 0.153 0.847 30 H 0.091 0.909 31 H 0.152 0.848 32 H 0.144 0.856 33 H 0.116 0.884 34 H 0.103 0.897 35 H 0.050 0.950 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.148 0.852 39 H 0.243 0.757 40 H 0.005 0.995 41 H 0.004 0.996 42 H 0.077 0.923 43 H 0.057 0.943 44 H 0.117 0.883 45 H 0.101 0.899 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -28.885 -12.237 -3.448 31.559 hybrid contribution 1.212 0.037 0.158 1.223 sum -27.673 -12.200 -3.291 30.422 Atomic orbital electron populations 1.23794 0.72706 1.06513 1.03578 1.86661 1.26385 1.30596 1.82843 1.19533 0.85808 0.82429 0.73248 1.90919 1.65509 1.36411 1.44932 1.25010 0.92254 0.95859 1.00138 1.78605 0.90497 1.23206 1.05082 1.91251 1.14652 1.27823 1.86775 1.22725 0.95550 0.81493 0.97077 1.22960 0.89352 0.95614 1.07717 1.21514 0.91485 1.00673 0.99651 1.22120 0.98194 0.98603 0.88468 1.61527 1.02103 1.57218 1.05007 1.21923 0.87573 0.96019 1.02651 1.21304 0.83274 0.86174 0.81067 1.90604 1.78452 1.37112 1.40008 1.46191 1.06297 1.32969 1.50708 1.18484 0.87661 0.87471 0.91761 1.21614 0.91195 1.15150 1.31591 0.89859 1.26050 1.04678 0.94312 0.94495 1.70135 1.33719 1.18622 1.34407 0.85224 0.76905 0.78262 0.78919 1.18650 1.21152 1.18766 1.22125 0.90632 0.94880 0.99130 1.21883 0.96914 1.04395 0.92466 0.90730 0.84690 0.90869 0.84825 0.85556 0.88442 0.89683 0.94995 0.91276 0.90212 0.85170 0.75733 0.99513 0.99613 0.92311 0.94337 0.88252 0.89904 0.87979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.57 113.37 1.20 1.39 16 2 O -0.35 -5.31 10.56 -56.65 -0.60 -5.91 16 3 C 0.55 9.40 7.96 70.26 0.56 9.96 16 4 O -0.49 -9.65 16.75 19.94 0.33 -9.31 16 5 C 0.06 1.05 7.31 45.76 0.33 1.39 16 6 N -0.23 -4.94 12.53 -42.20 -0.53 -5.47 16 7 O -0.18 -4.14 11.46 -38.75 -0.44 -4.58 16 8 C 0.07 1.31 0.77 -10.93 -0.01 1.30 16 9 C -0.12 -1.70 5.97 30.56 0.18 -1.52 16 10 C -0.09 -2.03 5.06 30.41 0.15 -1.88 16 11 C 0.05 1.49 5.04 86.37 0.44 1.92 16 12 N -0.53 -13.75 4.38 -900.26 -3.94 -17.69 16 13 C 0.05 1.28 5.45 85.56 0.47 1.75 16 14 C 0.49 19.26 7.50 87.66 0.66 19.92 16 15 O -0.58 -27.89 14.32 -3.04 -0.04 -27.93 16 16 N -0.71 -29.51 5.55 -466.79 -2.59 -32.10 16 17 C 0.27 14.71 5.43 85.63 0.46 15.18 16 18 C -0.56 -30.24 9.28 25.60 0.24 -30.00 16 19 H 0.08 4.06 7.60 -2.91 -0.02 4.04 16 20 C 0.00 0.24 5.46 84.65 0.46 0.70 16 21 N -0.93 -56.09 13.29 21.45 0.28 -55.80 16 22 Si 0.98 42.19 29.54 68.60 2.03 44.21 16 23 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 24 H -0.29 -12.20 7.11 99.48 0.71 -11.49 16 25 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 26 C 0.06 1.13 5.40 86.37 0.47 1.59 16 27 C -0.12 -1.95 5.05 30.42 0.15 -1.80 16 28 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.14 0.24 8.14 -2.38 -0.02 0.23 16 30 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.13 1.47 7.87 -2.39 -0.02 1.45 16 32 H 0.13 1.55 7.89 -2.39 -0.02 1.53 16 33 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 35 H 0.03 0.87 8.02 -2.39 -0.02 0.85 16 36 H 0.07 2.43 5.76 -2.39 -0.01 2.42 16 37 H 0.08 1.81 8.13 -2.39 -0.02 1.79 16 38 H 0.13 2.65 7.98 -2.39 -0.02 2.63 16 39 H 0.41 13.83 8.32 -92.71 -0.77 13.06 16 40 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 41 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 42 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 43 H 0.04 0.77 8.02 -2.39 -0.02 0.75 16 44 H 0.10 1.52 8.00 -2.39 -0.02 1.50 16 45 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -76.33 385.08 0.50 -75.84 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: 0.23 Total: 18.85 kcal Atomic # 6 Polarization: 14.14 SS G_CDS: 5.76 Total: 19.91 kcal Atomic # 7 Polarization: -104.29 SS G_CDS: -6.78 Total: -111.07 kcal Atomic # 8 Polarization: -46.99 SS G_CDS: -0.75 Total: -47.74 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.21 kcal Total: -76.33 0.50 -75.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771779220.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.911 kcal (2) G-P(sol) polarization free energy of solvation -76.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds